Literature DB >> 22070970

Suppression of sampling artefacts in high-resolution four-dimensional NMR spectra using signal separation algorithm.

Jan Stanek1, Rafal Augustyniak, Wiktor Koźmiński.   

Abstract

The development of non-uniform sampling (NUS) strategies permits to obtain high-dimensional spectra with increased resolution in significantly reduced experimental time. We extended a previously proposed signal separation algorithm (SSA) to process sparse four-dimensional NMR data. It is employed for two experiments carried out for a partially unstructured 114-residue construct of chicken Engrailed 2 protein, namely 4D HCCH-TOCSY and 4D C,N-edited NOESY. The SSA allowed us to obtain high-quality spectra using only as little as 0.16% of the available samples, with low sampling artefacts approaching the thermal noise level in most spectral regions. It is demonstrated that NUS 4D HCCH-TOCSY is dominated by sampling noise and requires efficient artefact suppression. On the other hand, 4D C,N-edited NOESY is a particularly attractive experiment for NUS, as the absence of diagonal peaks renders the problem of artefacts less critical. We also present a transverse-relaxation optimized sequence for HMQC that is especially designed for longer evolution periods in the indirectly detected proton dimension in high-dimensional pulse sequences. In conjunction with novel sampling strategies and efficient processing methods, this improvement enabled us to obtain unique structural information about aliphatic-amide contacts.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22070970     DOI: 10.1016/j.jmr.2011.10.009

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  25 in total

1.  Speeding up sequence specific assignment of IDPs.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal:  J Biomol NMR       Date:  2012-06-10       Impact factor: 2.835

2.  Nuclear overhauser spectroscopy of chiral CHD methylene groups.

Authors:  Rafal Augustyniak; Jan Stanek; Henri Colaux; Geoffrey Bodenhausen; Wiktor Koźmiński; Torsten Herrmann; Fabien Ferrage
Journal:  J Biomol NMR       Date:  2015-11-27       Impact factor: 2.835

3.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

4.  Fast multi-dimensional NMR acquisition and processing using the sparse FFT.

Authors:  Haitham Hassanieh; Maxim Mayzel; Lixin Shi; Dina Katabi; Vladislav Yu Orekhov
Journal:  J Biomol NMR       Date:  2015-06-30       Impact factor: 2.835

5.  Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools.

Authors:  Chris A E M Spronk; Szymon Żerko; Michał Górka; Wiktor Koźmiński; Benjamin Bardiaux; Barbara Zambelli; Francesco Musiani; Mario Piccioli; Priyanka Basak; Faith C Blum; Ryan C Johnson; Heidi Hu; D Scott Merrell; Michael Maroney; Stefano Ciurli
Journal:  J Biol Inorg Chem       Date:  2018-09-27       Impact factor: 3.358

6.  Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

Authors:  Jared Rovny; Robert L Blum; J Patrick Loria; Sean E Barrett
Journal:  J Biomol NMR       Date:  2019-07-06       Impact factor: 2.835

7.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

8.  Efficient acquisition of high-resolution 4-D diagonal-suppressed methyl-methyl NOESY for large proteins.

Authors:  Jie Wen; Pei Zhou; Jihui Wu
Journal:  J Magn Reson       Date:  2012-03-09       Impact factor: 2.229

9.  Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling.

Authors:  Sven G Hyberts; Alexander G Milbradt; Andreas B Wagner; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-02-14       Impact factor: 2.835

10.  4D Non-uniformly sampled C,C-NOESY experiment for sequential assignment of 13C, 15N-labeled RNAs.

Authors:  Jan Stanek; Peter Podbevšek; Wiktor Koźmiński; Janez Plavec; Mirko Cevec
Journal:  J Biomol NMR       Date:  2013-08-21       Impact factor: 2.835

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