Literature DB >> 2207074

Infrared spectra of carbonyl hemoglobins: characterization of dynamic heme pocket conformers.

W T Potter1, J H Hazzard, M G Choc, M P Tucker, W S Caughey.   

Abstract

The infrared spectra for carbon monoxide complexed to hemoglobins were examined in the C-O stretch region. Deconvolution of the spectra requires four bands and supports the presence of four distinct conformers at the ligand binding site. Most typical hemoglobins exhibit only one predominant conformer for each subunit represented by a band at 1951 cm-1 in contrast to myoglobins, which typically exist in two major conformations. Several hemoglobins with an enlarged heme pocket are shown to shift the C-O frequency into the higher frequency conformer regions. Many factors, including pH, temperature, solvents, and divalent metals, are also shown to be capable of expanding the heme pocket. Only very specific structural changes that can reduce the size of the heme pocket will result in the lower frequency conformers. The weighted averages of the multiple CO vibrational frequencies are linearly related to the single 13CO NMR chemical shift values and to the exponential of fast CO on-rates. Conformer interconversion occurs at a rate greater than 10(4) s-1. The infrared C-O stretch spectra provide qualitative and quantitative information on the structural dynamics, stability, and ligand binding properties of hemoglobins.

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Year:  1990        PMID: 2207074     DOI: 10.1021/bi00478a025

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

1.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

2.  Viscosity-dependent protein dynamics.

Authors:  Ilya J Finkelstein; Aaron M Massari; M D Fayer
Journal:  Biophys J       Date:  2007-05-15       Impact factor: 4.033

3.  Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy.

Authors:  Aaron M Massari; Ilya J Finkelstein; Michael D Fayer
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

4.  Temperature dependence of Q-band electron paramagnetic resonance spectra of nitrosyl heme proteins.

Authors:  M Flores; E Wajnberg; G Bemski
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

5.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Theoretical study of the electrostatic and steric effects on the spectroscopic characteristics of the metal-ligand unit of heme proteins. 2. C-O vibrational frequencies, 17O isotropic chemical shifts, and nuclear quadrupole coupling constants.

Authors:  B Kushkuley; S S Stavrov
Journal:  Biophys J       Date:  1997-02       Impact factor: 4.033

7.  Heme carbonyls: environmental effects on nu(C-O) and Fe-C/C-O bond length correlations.

Authors:  Nathan J Silvernail; Arne Roth; Charles E Schulz; Bruce C Noll; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2005-10-19       Impact factor: 15.419

8.  Metastable CO binding sites in the photoproduct of a novel cooperative dimeric hemoglobin.

Authors:  S Song; L Rothberg; D L Rousseau; A Boffi; E Chiancone
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

Review 9.  Probing heart cytochrome c oxidase structure and function by infrared spectroscopy.

Authors:  W S Caughey; A Dong; V Sampath; S Yoshikawa; X J Zhao
Journal:  J Bioenerg Biomembr       Date:  1993-04       Impact factor: 2.945

10.  Effects of crystallization on the heme-carbon monoxide moiety of bovine heart cytochrome c oxidase carbonyl.

Authors:  M Tsubaki; K Shinzawa; S Yoshikawa
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

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