Literature DB >> 17446536

Viscosity-dependent protein dynamics.

Ilya J Finkelstein1, Aaron M Massari, M D Fayer.   

Abstract

Spectrally resolved stimulated vibrational echo spectroscopy is used to investigate the dependence of fast protein dynamics on bulk solution viscosity at room temperature in four heme proteins: hemoglobin, myoglobin, a myoglobin mutant with the distal histidine replaced by a valine (H64V), and a cytochrome c552 mutant with the distal methionine replaced by an alanine (M61A). Fructose is added to increase the viscosity of the aqueous protein solutions over many orders of magnitude. The fast dynamics of the four globular proteins were found to be sensitive to solution viscosity and asymptotically approached the dynamical behavior that was previously observed in room temperature sugar glasses. The viscosity-dependent protein dynamics are analyzed in the context of a viscoelastic relaxation model that treats the protein as a deformable breathing sphere. The viscoelastic model is in qualitative agreement with the experimental data but does not capture sufficient system detail to offer a quantitative description of the underlying fluctuation amplitudes and relaxation rates. A calibration method based on the near-infrared spectrum of water overtones was constructed to accurately determine the viscosity of small volumes of protein solutions.

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Year:  2007        PMID: 17446536      PMCID: PMC1853152          DOI: 10.1529/biophysj.106.093708

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  41 in total

1.  A reduction of protein specific motions in co-ligated myoglobin embedded in a trehalose glass.

Authors:  L Cordone; P Galajda; E Vitrano; A Gassmann; A Ostermann; F Parak
Journal:  Eur Biophys J       Date:  1998       Impact factor: 1.733

2.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

3.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Fifth-order contributions to ultrafast spectrally resolved vibrational echoes: heme-CO proteins.

Authors:  Ilya J Finkelstein; Brian L McClain; M D Fayer
Journal:  J Chem Phys       Date:  2004-07-08       Impact factor: 3.488

5.  Dynamics of hemoglobin in human erythrocytes and in solution: influence of viscosity studied by ultrafast vibrational echo experiments.

Authors:  Brian L McClain; Ilya J Finkelstein; M D Fayer
Journal:  J Am Chem Soc       Date:  2004-12-08       Impact factor: 15.419

6.  Time scales and optical dephasing measurements: Investigation of dynamics in complex systems.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1989-05-15

7.  Cytochrome c552 mutants: structure and dynamics at the active site probed by multidimensional NMR and vibration echo spectroscopy.

Authors:  Aaron M Massari; Brian L McClain; Ilya J Finkelstein; Andrew P Lee; Heather L Reynolds; Kara L Bren; Michael D Fayer
Journal:  J Phys Chem B       Date:  2006-09-28       Impact factor: 2.991

8.  Evidence for two geminate rebinding states following laser photolysis of R state hemoglobin encapsulated in wet silica gels.

Authors:  Silvia Sottini; Stefania Abbruzzetti; Cristiano Viappiani; Stefano Bettati; Luca Ronda; Andrea Mozzarelli
Journal:  J Phys Chem B       Date:  2005-06-16       Impact factor: 2.991

9.  Folding, conformational changes, and dynamics of cytochromes C probed by NMR spectroscopy.

Authors:  Kara L Bren; Jason A Kellogg; Ravinder Kaur; Xin Wen
Journal:  Inorg Chem       Date:  2004-12-13       Impact factor: 5.165

10.  Orientational distribution of CO before and after photolysis of MbCO and HbCO: a determination using time-resolved polarized Mid-IR spectroscopy.

Authors:  Manho Lim; Timothy A Jackson; Philip A Anfinrud
Journal:  J Am Chem Soc       Date:  2004-06-30       Impact factor: 15.419

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  12 in total

1.  The role of protein-solvent hydrogen bond dynamics in the structural relaxation of a protein in glycerol versus water.

Authors:  Mounir Tarek; Douglas J Tobias
Journal:  Eur Biophys J       Date:  2008-04-22       Impact factor: 1.733

2.  The effect of complex solvents on the structure and dynamics of protein solutions: The case of Lysozyme in trehalose/water mixtures.

Authors:  Pavan K GhattyVenkataKrishna; Gustavo A Carri
Journal:  Eur Phys J E Soft Matter       Date:  2013-02-14       Impact factor: 1.890

3.  Cellular Viscosity in Prokaryotes and Thermal Stability of Low Molecular Weight Biomolecules.

Authors:  Alba Cuecas; Jorge Cruces; Juan F Galisteo-López; Xiaojun Peng; Juan M Gonzalez
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

4.  Temperature dependent equilibrium native to unfolded protein dynamics and properties observed with IR absorption and 2D IR vibrational echo experiments.

Authors:  Jean K Chung; Megan C Thielges; Sarah E J Bowman; Kara L Bren; M D Fayer
Journal:  J Am Chem Soc       Date:  2011-04-06       Impact factor: 15.419

5.  Dynamics of the folded and unfolded villin headpiece (HP35) measured with ultrafast 2D IR vibrational echo spectroscopy.

Authors:  Jean K Chung; Megan C Thielges; Michael D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

6.  Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.

Authors:  C J Jackson; J-L Foo; N Tokuriki; L Afriat; P D Carr; H-K Kim; G Schenk; D S Tawfik; D L Ollis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

Review 7.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013

8.  Neutron spin-echo studies of hemoglobin and myoglobin: multiscale internal dynamics.

Authors:  Jyotsana Lal; Peter Fouquet; Marco Maccarini; Lee Makowski
Journal:  J Mol Biol       Date:  2010-01-22       Impact factor: 5.469

9.  Neuroglobin dynamics observed with ultrafast 2D-IR vibrational echo spectroscopy.

Authors:  Haruto Ishikawa; Ilya J Finkelstein; Seongheun Kim; Kyungwon Kwak; Jean K Chung; Keisuke Wakasugi; Aaron M Massari; Michael D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-04       Impact factor: 11.205

10.  Native and unfolded cytochrome c--comparison of dynamics using 2D-IR vibrational echo spectroscopy.

Authors:  Seongheun Kim; Jean K Chung; Kyungwon Kwak; Sarah E J Bowman; Kara L Bren; Biman Bagchi; M D Fayer
Journal:  J Phys Chem B       Date:  2008-07-23       Impact factor: 2.991

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