| Literature DB >> 22065693 |
Hui Li1, Hongshi Jiang, Hong Sun.
Abstract
The title tetra-nuclear complex, [Cu(4)Cl(6)O(C(13)H(11)N(3))(4)], features a tetra-hedral arrangement of copper(II) ions bonded to the central O atom (site symmetry [Formula: see text]). Each of the six edges of the Cu(4) tetra-hedron is bridged by a chloride ion (one of which has site symmetry 2), so that each copper ion is linked to the other three metal ions through the central O atom and through three separate chloride-ion bridges. The fifth coord-ination position, located on the central Cu-O axis on the outside of the cluster, is occupied by an N atom of the mono-dentate 1-(pyridin-2-ylmeth-yl)-1H-benzimidazole ligand. The resulting coordination geometry of the metal ion is a distorted trigonal bipyramid with the O and N atoms in the axial positions. The dihedral angle between the benzimidazole ring system and the pendant pyridine ring is 61.0 (2)°.Entities:
Year: 2011 PMID: 22065693 PMCID: PMC3201516 DOI: 10.1107/S1600536811035252
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu4Cl6O(C13H11N3)4] | |
| Mo | |
| Tetragonal, | Cell parameters from 3492 reflections |
| θ = 2.8–25.3° | |
| µ = 1.85 mm−1 | |
| Block, brown | |
| 0.25 × 0.23 × 0.20 mm |
| Rigaku Mercury CCD diffractometer | 2467 independent reflections |
| Radiation source: fine-focus sealed tube | 2178 reflections with |
| graphite | |
| Detector resolution: 9 pixels mm-1 | θmax = 25.0°, θmin = 2.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7149 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2467 reflections | Δρmax = 0.34 e Å−3 |
| 170 parameters | Δρmin = −0.17 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1172 Friedel pairs |
| 0 constraints | Flack parameter: 0.005 (15) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 0.42929 (3) | 0.41004 (3) | 0.07467 (3) | 0.03400 (12) | |
| Cl1 | 0.28847 (6) | 0.47255 (6) | −0.00384 (7) | 0.0473 (2) | |
| Cl2 | 0.5000 | 0.5000 | 0.20129 (8) | 0.0637 (4) | |
| N3 | 0.3550 (2) | 0.3189 (2) | 0.1515 (2) | 0.0412 (7) | |
| C1 | 0.3592 (3) | 0.2243 (3) | 0.1520 (3) | 0.0498 (10) | |
| H1 | 0.3992 | 0.1887 | 0.1133 | 0.060* | |
| C2 | 0.2867 (3) | 0.3436 (3) | 0.2180 (2) | 0.0485 (10) | |
| C7 | 0.2518 (3) | 0.2588 (3) | 0.2595 (3) | 0.0533 (10) | |
| N2 | 0.2998 (3) | 0.1839 (2) | 0.2144 (2) | 0.0548 (9) | |
| C6 | 0.1844 (3) | 0.2627 (4) | 0.3322 (3) | 0.0736 (15) | |
| H6 | 0.1636 | 0.2068 | 0.3616 | 0.088* | |
| C3 | 0.2513 (3) | 0.4325 (3) | 0.2461 (3) | 0.0663 (13) | |
| H3 | 0.2726 | 0.4892 | 0.2184 | 0.080* | |
| C4 | 0.1837 (4) | 0.4350 (4) | 0.3161 (4) | 0.0844 (16) | |
| H4 | 0.1593 | 0.4940 | 0.3359 | 0.101* | |
| C5 | 0.1515 (4) | 0.3495 (5) | 0.3574 (4) | 0.0899 (18) | |
| H5 | 0.1056 | 0.3532 | 0.4040 | 0.108* | |
| C8 | 0.2900 (4) | 0.0806 (3) | 0.2368 (3) | 0.0755 (15) | |
| H8A | 0.2343 | 0.0721 | 0.2764 | 0.091* | |
| H8B | 0.3465 | 0.0601 | 0.2711 | 0.091* | |
| O1 | 0.5000 | 0.5000 | 0.0000 | 0.0292 (9) | |
| C9 | 0.2789 (3) | 0.0170 (3) | 0.1543 (3) | 0.0563 (10) | |
| C10 | 0.1944 (4) | −0.0195 (4) | 0.1286 (4) | 0.0846 (16) | |
| H10 | 0.1380 | −0.0038 | 0.1600 | 0.102* | |
| N1 | 0.3632 (4) | −0.0017 (4) | 0.1100 (4) | 0.1075 (18) | |
| C12 | 0.2815 (9) | −0.1018 (5) | 0.0115 (5) | 0.128 (3) | |
| H12 | 0.2863 | −0.1449 | −0.0374 | 0.154* | |
| C11 | 0.1926 (7) | −0.0858 (5) | 0.0487 (5) | 0.116 (2) | |
| H11 | 0.1364 | −0.1138 | 0.0261 | 0.139* | |
| C13 | 0.3600 (8) | −0.0601 (5) | 0.0405 (6) | 0.140 (4) | |
| H13 | 0.4172 | −0.0730 | 0.0093 | 0.168* |
| Cu1 | 0.0374 (2) | 0.0322 (2) | 0.03237 (19) | −0.00702 (17) | 0.0024 (2) | 0.00311 (19) |
| Cl1 | 0.0319 (5) | 0.0549 (5) | 0.0552 (5) | −0.0045 (4) | −0.0026 (4) | 0.0094 (5) |
| Cl2 | 0.0911 (11) | 0.0707 (10) | 0.0294 (6) | −0.0472 (9) | 0.000 | 0.000 |
| N3 | 0.0419 (18) | 0.0393 (18) | 0.0425 (16) | −0.0130 (14) | 0.0009 (14) | 0.0065 (14) |
| C1 | 0.061 (3) | 0.045 (2) | 0.043 (2) | −0.0162 (19) | −0.006 (2) | 0.0044 (19) |
| C2 | 0.045 (2) | 0.058 (3) | 0.042 (2) | −0.0166 (19) | −0.0002 (18) | 0.007 (2) |
| C7 | 0.054 (2) | 0.060 (3) | 0.045 (2) | −0.021 (2) | 0.001 (2) | 0.010 (2) |
| N2 | 0.068 (2) | 0.048 (2) | 0.048 (2) | −0.0231 (17) | −0.0028 (18) | 0.0152 (17) |
| C6 | 0.064 (3) | 0.096 (4) | 0.061 (3) | −0.035 (3) | 0.005 (2) | 0.030 (3) |
| C3 | 0.073 (3) | 0.060 (3) | 0.066 (3) | −0.015 (2) | 0.021 (3) | 0.003 (2) |
| C4 | 0.083 (4) | 0.080 (4) | 0.091 (4) | −0.003 (3) | 0.037 (3) | 0.002 (3) |
| C5 | 0.084 (4) | 0.102 (5) | 0.084 (4) | −0.016 (3) | 0.040 (3) | 0.002 (3) |
| C8 | 0.108 (4) | 0.054 (3) | 0.065 (3) | −0.030 (3) | −0.008 (3) | 0.021 (2) |
| O1 | 0.0293 (14) | 0.0293 (14) | 0.029 (2) | 0.000 | 0.000 | 0.000 |
| C9 | 0.064 (3) | 0.042 (2) | 0.064 (3) | −0.002 (2) | 0.010 (2) | 0.020 (2) |
| C10 | 0.093 (4) | 0.081 (4) | 0.081 (4) | −0.020 (3) | 0.010 (3) | 0.001 (3) |
| N1 | 0.107 (4) | 0.085 (3) | 0.130 (5) | 0.035 (3) | 0.033 (3) | 0.025 (3) |
| C12 | 0.229 (11) | 0.066 (4) | 0.090 (5) | −0.007 (6) | 0.033 (7) | 0.000 (4) |
| C11 | 0.158 (7) | 0.092 (5) | 0.097 (5) | −0.030 (5) | −0.005 (5) | 0.008 (4) |
| C13 | 0.202 (10) | 0.064 (5) | 0.154 (8) | 0.052 (5) | 0.079 (7) | 0.012 (5) |
| Cu1—O1 | 1.9199 (4) | C4—C5 | 1.400 (7) |
| Cu1—N3 | 1.974 (3) | C4—H4 | 0.9300 |
| Cu1—Cl1i | 2.3961 (10) | C5—H5 | 0.9300 |
| Cu1—Cl1 | 2.4192 (10) | C8—C9 | 1.494 (7) |
| Cu1—Cl2 | 2.4263 (10) | C8—H8A | 0.9700 |
| Cl1—Cu1ii | 2.3961 (9) | C8—H8B | 0.9700 |
| Cl2—Cu1iii | 2.4263 (10) | O1—Cu1iii | 1.9199 (4) |
| N3—C1 | 1.313 (4) | O1—Cu1i | 1.9199 (4) |
| N3—C2 | 1.394 (5) | O1—Cu1ii | 1.9199 (4) |
| C1—N2 | 1.345 (5) | C9—C10 | 1.328 (6) |
| C1—H1 | 0.9300 | C9—N1 | 1.358 (6) |
| C2—C3 | 1.386 (6) | C10—C11 | 1.480 (8) |
| C2—C7 | 1.407 (5) | C10—H10 | 0.9300 |
| C7—N2 | 1.395 (6) | N1—C13 | 1.293 (9) |
| C7—C6 | 1.409 (6) | C12—C13 | 1.301 (12) |
| N2—C8 | 1.474 (5) | C12—C11 | 1.362 (10) |
| C6—C5 | 1.337 (8) | C12—H12 | 0.9300 |
| C6—H6 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.382 (6) | C13—H13 | 0.9300 |
| C3—H3 | 0.9300 | ||
| O1—Cu1—N3 | 179.14 (9) | C3—C4—H4 | 119.7 |
| O1—Cu1—Cl1i | 85.68 (3) | C5—C4—H4 | 119.7 |
| N3—Cu1—Cl1i | 95.10 (9) | C6—C5—C4 | 122.3 (5) |
| O1—Cu1—Cl1 | 85.03 (3) | C6—C5—H5 | 118.8 |
| N3—Cu1—Cl1 | 94.25 (9) | C4—C5—H5 | 118.8 |
| Cl1i—Cu1—Cl1 | 120.483 (17) | N2—C8—C9 | 113.9 (4) |
| O1—Cu1—Cl2 | 83.56 (2) | N2—C8—H8A | 108.8 |
| N3—Cu1—Cl2 | 96.40 (9) | C9—C8—H8A | 108.8 |
| Cl1i—Cu1—Cl2 | 117.17 (3) | N2—C8—H8B | 108.8 |
| Cl1—Cu1—Cl2 | 119.88 (3) | C9—C8—H8B | 108.8 |
| Cu1ii—Cl1—Cu1 | 80.69 (3) | H8A—C8—H8B | 107.7 |
| Cu1—Cl2—Cu1iii | 81.58 (4) | Cu1iii—O1—Cu1i | 108.564 (12) |
| C1—N3—C2 | 105.8 (3) | Cu1iii—O1—Cu1 | 111.30 (2) |
| C1—N3—Cu1 | 128.2 (3) | Cu1i—O1—Cu1 | 108.564 (12) |
| C2—N3—Cu1 | 126.0 (2) | Cu1iii—O1—Cu1ii | 108.564 (12) |
| N3—C1—N2 | 113.1 (4) | Cu1i—O1—Cu1ii | 111.30 (2) |
| N3—C1—H1 | 123.5 | Cu1—O1—Cu1ii | 108.564 (12) |
| N2—C1—H1 | 123.5 | C10—C9—N1 | 123.5 (5) |
| C3—C2—N3 | 131.4 (3) | C10—C9—C8 | 122.7 (5) |
| C3—C2—C7 | 119.6 (4) | N1—C9—C8 | 113.8 (5) |
| N3—C2—C7 | 108.9 (4) | C9—C10—C11 | 118.1 (6) |
| N2—C7—C2 | 104.9 (4) | C9—C10—H10 | 121.0 |
| N2—C7—C6 | 134.1 (4) | C11—C10—H10 | 121.0 |
| C2—C7—C6 | 121.0 (5) | C13—N1—C9 | 117.3 (7) |
| C1—N2—C7 | 107.4 (3) | C13—C12—C11 | 123.7 (8) |
| C1—N2—C8 | 127.5 (4) | C13—C12—H12 | 118.1 |
| C7—N2—C8 | 125.1 (4) | C11—C12—H12 | 118.1 |
| C5—C6—C7 | 117.8 (4) | C12—C11—C10 | 113.3 (7) |
| C5—C6—H6 | 121.1 | C12—C11—H11 | 123.3 |
| C7—C6—H6 | 121.1 | C10—C11—H11 | 123.3 |
| C4—C3—C2 | 118.6 (4) | N1—C13—C12 | 123.9 (8) |
| C4—C3—H3 | 120.7 | N1—C13—H13 | 118.0 |
| C2—C3—H3 | 120.7 | C12—C13—H13 | 118.0 |
| C3—C4—C5 | 120.6 (5) | ||
| O1—Cu1—Cl1—Cu1ii | −1.10 (2) | N2—C7—C6—C5 | −178.9 (5) |
| N3—Cu1—Cl1—Cu1ii | 178.42 (9) | C2—C7—C6—C5 | 3.0 (7) |
| Cl1i—Cu1—Cl1—Cu1ii | −83.12 (4) | N3—C2—C3—C4 | −178.9 (4) |
| Cl2—Cu1—Cl1—Cu1ii | 78.54 (4) | C7—C2—C3—C4 | 1.4 (7) |
| O1—Cu1—Cl2—Cu1iii | 0.0 | C2—C3—C4—C5 | −0.2 (8) |
| N3—Cu1—Cl2—Cu1iii | −179.13 (9) | C7—C6—C5—C4 | −1.8 (9) |
| Cl1i—Cu1—Cl2—Cu1iii | 81.77 (3) | C3—C4—C5—C6 | 0.5 (9) |
| Cl1—Cu1—Cl2—Cu1iii | −80.48 (3) | C1—N2—C8—C9 | −48.8 (6) |
| O1—Cu1—N3—C1 | 150 (6) | C7—N2—C8—C9 | 135.3 (4) |
| Cl1i—Cu1—N3—C1 | −4.5 (3) | N3—Cu1—O1—Cu1iii | 88 (6) |
| Cl1—Cu1—N3—C1 | 116.6 (3) | Cl1i—Cu1—O1—Cu1iii | −117.99 (3) |
| Cl2—Cu1—N3—C1 | −122.7 (3) | Cl1—Cu1—O1—Cu1iii | 120.87 (3) |
| O1—Cu1—N3—C2 | −31 (6) | Cl2—Cu1—O1—Cu1iii | 0.0 |
| Cl1i—Cu1—N3—C2 | 174.8 (3) | N3—Cu1—O1—Cu1i | −153 (6) |
| Cl1—Cu1—N3—C2 | −64.1 (3) | Cl1i—Cu1—O1—Cu1i | 1.44 (3) |
| Cl2—Cu1—N3—C2 | 56.7 (3) | Cl1—Cu1—O1—Cu1i | −119.70 (3) |
| C2—N3—C1—N2 | −0.7 (4) | Cl2—Cu1—O1—Cu1i | 119.434 (8) |
| Cu1—N3—C1—N2 | 178.8 (2) | N3—Cu1—O1—Cu1ii | −32 (6) |
| C1—N3—C2—C3 | −178.6 (4) | Cl1i—Cu1—O1—Cu1ii | 122.58 (3) |
| Cu1—N3—C2—C3 | 2.0 (6) | Cl1—Cu1—O1—Cu1ii | 1.43 (3) |
| C1—N3—C2—C7 | 1.2 (4) | Cl2—Cu1—O1—Cu1ii | −119.434 (8) |
| Cu1—N3—C2—C7 | −178.3 (2) | N2—C8—C9—C10 | −102.8 (6) |
| C3—C2—C7—N2 | 178.6 (4) | N2—C8—C9—N1 | 78.9 (5) |
| N3—C2—C7—N2 | −1.2 (4) | N1—C9—C10—C11 | 1.4 (7) |
| C3—C2—C7—C6 | −2.8 (6) | C8—C9—C10—C11 | −176.8 (4) |
| N3—C2—C7—C6 | 177.4 (4) | C10—C9—N1—C13 | −1.6 (7) |
| N3—C1—N2—C7 | −0.1 (4) | C8—C9—N1—C13 | 176.8 (5) |
| N3—C1—N2—C8 | −176.6 (4) | C13—C12—C11—C10 | −2.7 (10) |
| C2—C7—N2—C1 | 0.8 (4) | C9—C10—C11—C12 | 0.6 (8) |
| C6—C7—N2—C1 | −177.6 (5) | C9—N1—C13—C12 | −0.5 (10) |
| C2—C7—N2—C8 | 177.4 (4) | C11—C12—C13—N1 | 2.8 (13) |
| C6—C7—N2—C8 | −1.0 (8) |
Selected bond lengths (Å)
| Cu1—O1 | 1.9199 (4) |
| Cu1—N3 | 1.974 (3) |
| Cu1—Cl1i | 2.3961 (10) |
| Cu1—Cl1 | 2.4192 (10) |
| Cu1—Cl2 | 2.4263 (10) |
Symmetry code: (i) .