Literature DB >> 22065629

Methyl rac-(2R,11S,12R)-12-(2-chloro-phen-yl)-22-oxo-9,13,21-trioxapenta-cyclo-[12.8.0.0.0.0]docosa-1(14),3,5,7,15(20),16,18-hepta-ene-11-carboxyl-ate.

K Swaminathan, K Sethusankar, G Sivakumar, M Bakthadoss.   

Abstract

In the title compound C(27)H(19)ClO(6), the coumarin ring system is not exactly planar, with a dihedral angle of 4.12 (7)° between its benzene and lactone rings. The cis-fused pyran rings adopt half-chair conformations. The carbometh-oxy and chloro-phenyl groups are in a trans configuration. The crystal packing is stabilized by inter-molecular C-H⋯O interactions, which produce a centrosymmetric R(2) (2)(14) dimer and two centrosymmetric R(2) (2)(18) dimers connecting the mol-ecules in a two-dimensional fashion.

Entities:  

Year:  2011        PMID: 22065629      PMCID: PMC3201225          DOI: 10.1107/S1600536811037196

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For uses of coumarins, see: Kayser & Kolodziej (1997 ▶); Fan et al. (2001 ▶); Wang et al. (2002 ▶). For related structures, see: Kanchanadevi et al. (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C27H19ClO6 M = 474.87 Triclinic, a = 8.4441 (3) Å b = 9.7556 (3) Å c = 13.8546 (5) Å α = 73.831 (2)° β = 82.858 (2)° γ = 87.962 (2)° V = 1087.65 (6) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 293 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 26685 measured reflections 6336 independent reflections 4968 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.143 S = 1.01 6336 reflections 308 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.52 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037196/ld2025sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037196/ld2025Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037196/ld2025Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H19ClO6Z = 2
Mr = 474.87F(000) = 492
Triclinic, P1Dx = 1.450 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4441 (3) ÅCell parameters from 6336 reflections
b = 9.7556 (3) Åθ = 2.2–30.0°
c = 13.8546 (5) ŵ = 0.22 mm1
α = 73.831 (2)°T = 293 K
β = 82.858 (2)°Block, colourless
γ = 87.962 (2)°0.30 × 0.25 × 0.25 mm
V = 1087.65 (6) Å3
Bruker Kappa APEXII CCD diffractometer4968 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
graphiteθmax = 30.0°, θmin = 2.2°
ω scansh = −11→11
26685 measured reflectionsk = −12→13
6336 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0742P)2 + 0.3227P] where P = (Fo2 + 2Fc2)/3
6336 reflections(Δ/σ)max < 0.001
308 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.52 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.65779 (17)0.56358 (17)0.40142 (11)0.0427 (3)
H10.67840.51990.46740.051*
C20.6817 (2)0.70748 (18)0.36081 (13)0.0485 (4)
H20.71990.76120.39890.058*
C30.6491 (2)0.77270 (17)0.26310 (13)0.0493 (4)
H30.66740.86990.23490.059*
C40.58945 (19)0.69331 (15)0.20757 (11)0.0424 (3)
H40.56320.73890.14310.051*
C50.56753 (15)0.54613 (14)0.24582 (9)0.0331 (3)
C60.60257 (15)0.48263 (14)0.34399 (10)0.0345 (3)
C70.51941 (16)0.25398 (14)0.33923 (10)0.0355 (3)
H7A0.46680.17160.38740.043*
H7B0.60780.21970.30040.043*
C80.40116 (14)0.33317 (13)0.26765 (9)0.0302 (2)
C90.48878 (14)0.45976 (13)0.18856 (9)0.0301 (2)
H90.40880.52050.15150.036*
C100.59876 (14)0.40135 (13)0.11382 (9)0.0311 (2)
C110.58170 (14)0.26821 (14)0.10487 (9)0.0323 (2)
C120.33567 (14)0.23433 (14)0.21156 (9)0.0322 (2)
H120.26960.29120.16140.039*
C130.71735 (16)0.49406 (15)0.04264 (9)0.0369 (3)
C140.81399 (16)0.29644 (16)−0.01975 (10)0.0391 (3)
C150.68874 (15)0.21021 (15)0.03630 (9)0.0347 (3)
C160.67418 (18)0.07365 (17)0.02455 (11)0.0432 (3)
H160.59070.01460.06150.052*
C170.7832 (2)0.0264 (2)−0.04158 (14)0.0546 (4)
H170.7722−0.0637−0.05050.066*
C180.9098 (2)0.1137 (2)−0.09498 (14)0.0590 (4)
H180.98410.0806−0.13870.071*
C190.92701 (19)0.2478 (2)−0.08424 (12)0.0531 (4)
H191.01280.3051−0.11950.064*
C200.23943 (16)0.10893 (14)0.27860 (10)0.0362 (3)
C210.3141 (2)−0.01302 (16)0.33065 (13)0.0484 (4)
H210.4247−0.01980.32030.058*
C220.2274 (3)−0.12563 (19)0.39802 (15)0.0646 (5)
H220.2798−0.20620.43310.078*
C230.0635 (3)−0.1172 (2)0.41250 (16)0.0699 (6)
H230.0051−0.19160.45840.084*
C24−0.0138 (2)−0.0002 (2)0.35981 (15)0.0619 (5)
H24−0.12460.00450.36900.074*
C250.07359 (17)0.11175 (18)0.29258 (12)0.0454 (3)
C260.26076 (15)0.38165 (15)0.33110 (10)0.0352 (3)
C270.0578 (3)0.5498 (3)0.33678 (18)0.0788 (7)
H27A−0.03350.49410.33630.118*
H27B0.03790.64860.30490.118*
H27C0.07710.53840.40540.118*
O10.57971 (13)0.34145 (11)0.39277 (7)0.0437 (2)
O20.46794 (11)0.17495 (10)0.15960 (7)0.0386 (2)
O30.82713 (12)0.43425 (12)−0.01572 (8)0.0439 (2)
O40.72725 (15)0.62092 (12)0.02839 (8)0.0514 (3)
O50.21355 (14)0.31564 (13)0.41573 (8)0.0511 (3)
O60.19620 (14)0.50185 (13)0.28202 (9)0.0556 (3)
Cl1−0.03104 (5)0.25730 (6)0.22616 (5)0.07724 (18)
U11U22U33U12U13U23
C10.0385 (7)0.0535 (8)0.0382 (7)−0.0064 (6)−0.0058 (5)−0.0149 (6)
C20.0478 (8)0.0524 (9)0.0516 (8)−0.0101 (7)−0.0021 (6)−0.0251 (7)
C30.0576 (9)0.0389 (7)0.0524 (9)−0.0087 (6)0.0015 (7)−0.0165 (6)
C40.0510 (8)0.0350 (7)0.0385 (7)−0.0050 (6)−0.0011 (6)−0.0068 (5)
C50.0313 (6)0.0350 (6)0.0319 (6)−0.0047 (5)−0.0005 (4)−0.0081 (5)
C60.0290 (5)0.0388 (6)0.0342 (6)−0.0039 (5)−0.0029 (4)−0.0076 (5)
C70.0352 (6)0.0341 (6)0.0331 (6)−0.0027 (5)−0.0057 (5)−0.0017 (5)
C80.0277 (5)0.0324 (6)0.0271 (5)−0.0046 (4)−0.0006 (4)−0.0034 (4)
C90.0291 (5)0.0307 (5)0.0274 (5)−0.0034 (4)−0.0031 (4)−0.0028 (4)
C100.0285 (5)0.0365 (6)0.0255 (5)−0.0065 (4)−0.0017 (4)−0.0036 (4)
C110.0286 (5)0.0379 (6)0.0276 (5)−0.0062 (5)−0.0005 (4)−0.0050 (5)
C120.0282 (5)0.0355 (6)0.0307 (6)−0.0062 (4)0.0013 (4)−0.0070 (5)
C130.0361 (6)0.0446 (7)0.0270 (5)−0.0118 (5)−0.0015 (5)−0.0046 (5)
C140.0335 (6)0.0520 (8)0.0312 (6)−0.0056 (5)−0.0007 (5)−0.0109 (5)
C150.0317 (6)0.0432 (7)0.0285 (5)−0.0025 (5)−0.0029 (4)−0.0090 (5)
C160.0424 (7)0.0480 (8)0.0405 (7)−0.0034 (6)−0.0032 (6)−0.0149 (6)
C170.0566 (9)0.0605 (10)0.0527 (9)0.0029 (8)−0.0030 (7)−0.0275 (8)
C180.0516 (9)0.0769 (12)0.0530 (9)0.0047 (8)0.0062 (7)−0.0312 (9)
C190.0396 (7)0.0755 (11)0.0428 (8)−0.0071 (7)0.0084 (6)−0.0190 (8)
C200.0349 (6)0.0387 (6)0.0339 (6)−0.0119 (5)0.0037 (5)−0.0100 (5)
C210.0486 (8)0.0377 (7)0.0531 (9)−0.0091 (6)0.0019 (7)−0.0051 (6)
C220.0836 (13)0.0398 (8)0.0603 (10)−0.0189 (8)0.0015 (9)0.0005 (7)
C230.0819 (13)0.0590 (11)0.0600 (11)−0.0388 (10)0.0225 (10)−0.0105 (9)
C240.0466 (9)0.0712 (12)0.0680 (11)−0.0298 (8)0.0193 (8)−0.0268 (10)
C250.0360 (7)0.0533 (8)0.0483 (8)−0.0140 (6)0.0025 (6)−0.0177 (7)
C260.0306 (6)0.0418 (7)0.0335 (6)−0.0060 (5)−0.0007 (5)−0.0113 (5)
C270.0661 (12)0.0860 (15)0.0753 (13)0.0301 (11)0.0142 (10)−0.0209 (12)
O10.0515 (6)0.0415 (5)0.0361 (5)−0.0080 (4)−0.0168 (4)−0.0013 (4)
O20.0364 (5)0.0369 (5)0.0401 (5)−0.0104 (4)0.0090 (4)−0.0114 (4)
O30.0380 (5)0.0518 (6)0.0385 (5)−0.0139 (4)0.0087 (4)−0.0108 (4)
O40.0623 (7)0.0433 (6)0.0423 (6)−0.0195 (5)0.0093 (5)−0.0061 (4)
O50.0472 (6)0.0628 (7)0.0355 (5)−0.0051 (5)0.0094 (4)−0.0065 (5)
O60.0474 (6)0.0591 (7)0.0499 (6)0.0164 (5)0.0078 (5)−0.0059 (5)
Cl10.0375 (2)0.0878 (4)0.1006 (4)−0.0003 (2)−0.0181 (2)−0.0121 (3)
C1—C21.371 (2)C13—O31.3753 (17)
C1—C61.3938 (19)C14—O31.3700 (18)
C1—H10.9300C14—C151.3873 (18)
C2—C31.383 (2)C14—C191.388 (2)
C2—H20.9300C15—C161.398 (2)
C3—C41.379 (2)C16—C171.376 (2)
C3—H30.9300C16—H160.9300
C4—C51.3955 (18)C17—C181.390 (3)
C4—H40.9300C17—H170.9300
C5—C61.3925 (18)C18—C191.372 (3)
C5—C91.5247 (17)C18—H180.9300
C6—O11.3634 (16)C19—H190.9300
C7—O11.4195 (17)C20—C211.384 (2)
C7—C81.5304 (17)C20—C251.3900 (19)
C7—H7A0.9700C21—C221.389 (2)
C7—H7B0.9700C21—H210.9300
C8—C261.5279 (17)C22—C231.376 (3)
C8—C91.5436 (16)C22—H220.9300
C8—C121.5497 (17)C23—C241.365 (3)
C9—C101.5203 (17)C23—H230.9300
C9—H90.9800C24—C251.387 (2)
C10—C111.3530 (18)C24—H240.9300
C10—C131.4545 (16)C25—Cl11.7404 (18)
C11—O21.3499 (14)C26—O51.1959 (16)
C11—C151.4455 (18)C26—O61.3180 (18)
C12—O21.4449 (15)C27—O61.449 (2)
C12—C201.5067 (17)C27—H27A0.9600
C12—H120.9800C27—H27B0.9600
C13—O41.2021 (18)C27—H27C0.9600
C2—C1—C6120.12 (14)O3—C13—C10118.33 (12)
C2—C1—H1119.9O3—C14—C15120.97 (12)
C6—C1—H1119.9O3—C14—C19117.76 (13)
C1—C2—C3119.92 (14)C15—C14—C19121.24 (14)
C1—C2—H2120.0C14—C15—C16118.92 (13)
C3—C2—H2120.0C14—C15—C11117.02 (12)
C4—C3—C2119.88 (14)C16—C15—C11124.05 (12)
C4—C3—H3120.1C17—C16—C15120.10 (14)
C2—C3—H3120.1C17—C16—H16120.0
C3—C4—C5121.53 (14)C15—C16—H16120.0
C3—C4—H4119.2C16—C17—C18119.80 (16)
C5—C4—H4119.2C16—C17—H17120.1
C6—C5—C4117.51 (12)C18—C17—H17120.1
C6—C5—C9120.32 (11)C19—C18—C17121.11 (15)
C4—C5—C9121.74 (12)C19—C18—H18119.4
O1—C6—C5123.90 (12)C17—C18—H18119.4
O1—C6—C1115.05 (12)C18—C19—C14118.78 (15)
C5—C6—C1120.98 (12)C18—C19—H19120.6
O1—C7—C8112.52 (11)C14—C19—H19120.6
O1—C7—H7A109.1C21—C20—C25117.39 (13)
C8—C7—H7A109.1C21—C20—C12120.77 (12)
O1—C7—H7B109.1C25—C20—C12121.82 (13)
C8—C7—H7B109.1C20—C21—C22121.45 (16)
H7A—C7—H7B107.8C20—C21—H21119.3
C26—C8—C7108.02 (10)C22—C21—H21119.3
C26—C8—C9112.31 (10)C23—C22—C21119.55 (19)
C7—C8—C9108.42 (10)C23—C22—H22120.2
C26—C8—C12108.12 (10)C21—C22—H22120.2
C7—C8—C12111.28 (10)C24—C23—C22120.32 (15)
C9—C8—C12108.71 (9)C24—C23—H23119.8
C10—C9—C5116.45 (10)C22—C23—H23119.8
C10—C9—C8108.37 (10)C23—C24—C25119.77 (17)
C5—C9—C8107.63 (9)C23—C24—H24120.1
C10—C9—H9108.0C25—C24—H24120.1
C5—C9—H9108.0C24—C25—C20121.43 (17)
C8—C9—H9108.0C24—C25—Cl1117.87 (14)
C11—C10—C13117.87 (11)C20—C25—Cl1120.70 (11)
C11—C10—C9122.10 (10)O5—C26—O6123.95 (13)
C13—C10—C9119.78 (11)O5—C26—C8123.17 (13)
O2—C11—C10124.46 (11)O6—C26—C8112.87 (11)
O2—C11—C15113.05 (11)O6—C27—H27A109.5
C10—C11—C15122.47 (11)O6—C27—H27B109.5
O2—C12—C20106.06 (10)H27A—C27—H27B109.5
O2—C12—C8109.13 (10)O6—C27—H27C109.5
C20—C12—C8115.06 (10)H27A—C27—H27C109.5
O2—C12—H12108.8H27B—C27—H27C109.5
C20—C12—H12108.8C6—O1—C7117.78 (10)
C8—C12—H12108.8C11—O2—C12116.06 (10)
O4—C13—O3115.96 (11)C14—O3—C13122.10 (10)
O4—C13—C10125.69 (13)C26—O6—C27115.38 (14)
C6—C1—C2—C30.8 (2)O2—C11—C15—C14−177.14 (12)
C1—C2—C3—C41.3 (2)C10—C11—C15—C141.25 (19)
C2—C3—C4—C5−3.0 (2)O2—C11—C15—C162.06 (19)
C3—C4—C5—C62.3 (2)C10—C11—C15—C16−179.55 (13)
C3—C4—C5—C9174.80 (14)C14—C15—C16—C170.1 (2)
C4—C5—C6—O1176.77 (12)C11—C15—C16—C17−179.04 (14)
C9—C5—C6—O14.20 (19)C15—C16—C17—C181.4 (3)
C4—C5—C6—C1−0.15 (19)C16—C17—C18—C19−1.1 (3)
C9—C5—C6—C1−172.71 (12)C17—C18—C19—C14−0.9 (3)
C2—C1—C6—O1−178.59 (13)O3—C14—C19—C18−175.40 (15)
C2—C1—C6—C5−1.4 (2)C15—C14—C19—C182.5 (2)
O1—C7—C8—C26−60.63 (13)O2—C12—C20—C2140.09 (17)
O1—C7—C8—C961.33 (13)C8—C12—C20—C21−80.64 (16)
O1—C7—C8—C12−179.17 (10)O2—C12—C20—C25−141.37 (13)
C6—C5—C9—C10−98.76 (13)C8—C12—C20—C2597.89 (15)
C4—C5—C9—C1089.00 (15)C25—C20—C21—C22−3.0 (2)
C6—C5—C9—C823.08 (16)C12—C20—C21—C22175.57 (16)
C4—C5—C9—C8−149.17 (12)C20—C21—C22—C231.0 (3)
C26—C8—C9—C10−166.73 (10)C21—C22—C23—C241.1 (3)
C7—C8—C9—C1073.98 (12)C22—C23—C24—C25−1.0 (3)
C12—C8—C9—C10−47.12 (12)C23—C24—C25—C20−1.1 (3)
C26—C8—C9—C566.55 (13)C23—C24—C25—Cl1179.17 (15)
C7—C8—C9—C5−52.74 (13)C21—C20—C25—C243.1 (2)
C12—C8—C9—C5−173.85 (10)C12—C20—C25—C24−175.47 (15)
C5—C9—C10—C11138.72 (12)C21—C20—C25—Cl1−177.20 (12)
C8—C9—C10—C1117.27 (16)C12—C20—C25—Cl14.2 (2)
C5—C9—C10—C13−47.09 (15)C7—C8—C26—O5−32.65 (17)
C8—C9—C10—C13−168.54 (11)C9—C8—C26—O5−152.17 (13)
C13—C10—C11—O2−174.11 (12)C12—C8—C26—O587.89 (15)
C9—C10—C11—O20.2 (2)C7—C8—C26—O6148.50 (12)
C13—C10—C11—C157.69 (19)C9—C8—C26—O628.98 (15)
C9—C10—C11—C15−178.02 (11)C12—C8—C26—O6−90.96 (13)
C26—C8—C12—O2−173.94 (10)C5—C6—O1—C71.24 (19)
C7—C8—C12—O2−55.46 (13)C1—C6—O1—C7178.32 (12)
C9—C8—C12—O263.88 (13)C8—C7—O1—C6−34.54 (16)
C26—C8—C12—C20−54.89 (14)C10—C11—O2—C1215.68 (18)
C7—C8—C12—C2063.59 (14)C15—C11—O2—C12−165.96 (11)
C9—C8—C12—C20−177.08 (10)C20—C12—O2—C11−171.76 (10)
C11—C10—C13—O4165.57 (14)C8—C12—O2—C11−47.26 (14)
C9—C10—C13—O4−8.9 (2)C15—C14—O3—C13−0.6 (2)
C11—C10—C13—O3−13.09 (18)C19—C14—O3—C13177.27 (13)
C9—C10—C13—O3172.48 (11)O4—C13—O3—C14−168.99 (13)
O3—C14—C15—C16175.70 (13)C10—C13—O3—C149.80 (19)
C19—C14—C15—C16−2.1 (2)O5—C26—O6—C27−1.6 (2)
O3—C14—C15—C11−5.06 (19)C8—C26—O6—C27177.28 (16)
C19—C14—C15—C11177.12 (13)
D—H···AD—HH···AD···AD—H···A
C2—H2···O5i0.932.593.271 (2)130
C12—H12···O4ii0.982.533.3316 (16)139
C23—H23···O5iii0.932.473.355 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O5i0.932.593.271 (2)130
C12—H12⋯O4ii0.982.533.3316 (16)139
C23—H23⋯O5iii0.932.473.355 (3)159

Symmetry codes: (i) ; (ii) ; (iii) .

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