Literature DB >> 22064898

N,N-Dimethyl-3-oxo-3-(thio-phen-2-yl)propanaminium chloride.

A S Dayananda, Jerry P Jasinski, James A Golen, H S Yathirajan, B Narayana.   

Abstract

In the title mol-ecular salt, C(9)H(14)NOS(+)·Cl(-), the crystal packing is stabilized by weak inter-molecular N-H⋯Cl, C-H⋯Cl and C-H⋯π inter-actions, which lead to the formation of a two-dimensional supra-molecular layer which stacks along the b axis.

Entities:  

Year:  2011        PMID: 22064898      PMCID: PMC3200580          DOI: 10.1107/S1600536811031199

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the management of major depressive disorders, see: Gupta et al. (2007 ▶). For the dual re-uptake inhibitor drug, duloxetine [systematic name (+)-(S)-N-methyl-3-(naphthalen-1-yl­oxy)-3-(thio­phen-2-yl)propan-1-amine], see: Waitekus & Kirkpatrick, (2004 ▶). For related structures, see: Bhadbhade et al. (2009 ▶); Tao et al. (2006 ▶, 2008 ▶).

Experimental

Crystal data

C9H14NOS+·Cl− M = 219.72 Monoclinic, a = 5.8663 (3) Å b = 27.0109 (9) Å c = 7.1385 (4) Å β = 110.767 (6)° V = 1057.63 (9) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 173 K 0.24 × 0.21 × 0.11 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.885, T max = 0.945 14443 measured reflections 3538 independent reflections 3290 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.097 S = 1.13 3538 reflections 124 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031199/tk2775sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031199/tk2775Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811031199/tk2775Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H14NOS+·ClF(000) = 464
Mr = 219.72Dx = 1.380 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6745 reflections
a = 5.8663 (3) Åθ = 3.1–32.2°
b = 27.0109 (9) ŵ = 0.52 mm1
c = 7.1385 (4) ÅT = 173 K
β = 110.767 (6)°Block, colorless
V = 1057.63 (9) Å30.24 × 0.21 × 0.11 mm
Z = 4
Oxford Diffraction Xcalibur Eos Gemini diffractometer3538 independent reflections
Radiation source: Enhance (Mo) X-ray Source3290 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 16.1500 pixels mm-1θmax = 32.3°, θmin = 3.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −39→40
Tmin = 0.885, Tmax = 0.945l = −10→10
14443 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.097w = 1/[σ2(Fo2) + (0.0412P)2 + 0.4408P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max = 0.003
3538 reflectionsΔρmax = 0.37 e Å3
124 parametersΔρmin = −0.28 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0190 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.52202 (6)0.201976 (12)0.22248 (5)0.02281 (9)
Cl10.25260 (7)0.437297 (12)0.73047 (5)0.02698 (10)
O10.59639 (18)0.31119 (4)0.23658 (16)0.0269 (2)
N10.1628 (2)0.42989 (4)0.28618 (16)0.0202 (2)
H1N0.185 (3)0.4283 (6)0.413 (2)0.024*
C10.3315 (2)0.15653 (5)0.24400 (19)0.0232 (2)
H1A0.35840.12220.23070.028*
C20.1360 (2)0.17494 (5)0.2825 (2)0.0232 (2)
H2A0.01250.15490.30080.028*
C30.1380 (2)0.22742 (4)0.29226 (19)0.0200 (2)
H3A0.01570.24650.31720.024*
C40.3377 (2)0.24739 (4)0.26137 (17)0.0176 (2)
C50.4056 (2)0.29935 (4)0.25738 (17)0.0183 (2)
C60.2273 (2)0.33779 (4)0.27755 (18)0.0193 (2)
H6A0.06310.33120.17800.023*
H6B0.21740.33580.41290.023*
C70.3098 (2)0.38907 (4)0.24408 (19)0.0209 (2)
H7A0.48260.39340.33110.025*
H7B0.30060.39180.10330.025*
C8−0.1028 (3)0.42606 (5)0.1722 (2)0.0301 (3)
H8A−0.18590.45500.20090.045*
H8B−0.16650.39590.21180.045*
H8C−0.13130.42480.02840.045*
C90.2585 (3)0.47836 (5)0.2479 (2)0.0278 (3)
H9A0.16680.50520.28060.042*
H9B0.24050.48060.10630.042*
H9C0.43130.48120.33150.042*
U11U22U33U12U13U23
S10.01902 (15)0.02573 (16)0.02610 (16)0.00399 (11)0.01097 (12)−0.00015 (11)
Cl10.03912 (19)0.02268 (15)0.02328 (15)−0.00231 (12)0.01617 (13)−0.00105 (11)
O10.0213 (4)0.0274 (5)0.0360 (5)−0.0029 (4)0.0150 (4)−0.0012 (4)
N10.0250 (5)0.0182 (4)0.0199 (5)−0.0021 (4)0.0109 (4)−0.0013 (4)
C10.0259 (6)0.0205 (5)0.0226 (6)0.0040 (4)0.0078 (5)0.0007 (4)
C20.0221 (6)0.0213 (5)0.0265 (6)−0.0012 (4)0.0090 (5)0.0012 (5)
C30.0169 (5)0.0199 (5)0.0243 (5)0.0010 (4)0.0086 (4)0.0001 (4)
C40.0149 (5)0.0197 (5)0.0174 (5)0.0016 (4)0.0050 (4)0.0003 (4)
C50.0173 (5)0.0221 (5)0.0156 (5)−0.0002 (4)0.0060 (4)−0.0002 (4)
C60.0187 (5)0.0196 (5)0.0209 (5)−0.0008 (4)0.0086 (4)0.0006 (4)
C70.0228 (5)0.0200 (5)0.0234 (5)−0.0008 (4)0.0126 (5)−0.0007 (4)
C80.0240 (6)0.0232 (6)0.0421 (8)0.0012 (5)0.0106 (6)−0.0032 (5)
C90.0377 (7)0.0177 (5)0.0315 (7)−0.0056 (5)0.0167 (6)−0.0020 (5)
S1—C11.7032 (14)C4—C51.4620 (16)
S1—C41.7216 (12)C5—C61.5165 (16)
O1—C51.2224 (15)C6—C71.5139 (16)
N1—C81.4834 (18)C6—H6A0.9900
N1—C91.4876 (16)C6—H6B0.9900
N1—C71.4947 (16)C7—H7A0.9900
N1—H1N0.870 (13)C7—H7B0.9900
C1—C21.3647 (18)C8—H8A0.9800
C1—H1A0.9500C8—H8B0.9800
C2—C31.4191 (17)C8—H8C0.9800
C2—H2A0.9500C9—H9A0.9800
C3—C41.3769 (16)C9—H9B0.9800
C3—H3A0.9500C9—H9C0.9800
C1—S1—C491.69 (6)C7—C6—H6A109.7
C8—N1—C9110.60 (11)C5—C6—H6A109.7
C8—N1—C7114.01 (10)C7—C6—H6B109.7
C9—N1—C7109.27 (10)C5—C6—H6B109.7
C8—N1—H1N108.0 (12)H6A—C6—H6B108.2
C9—N1—H1N107.8 (11)N1—C7—C6113.80 (9)
C7—N1—H1N106.8 (11)N1—C7—H7A108.8
C2—C1—S1112.38 (10)C6—C7—H7A108.8
C2—C1—H1A123.8N1—C7—H7B108.8
S1—C1—H1A123.8C6—C7—H7B108.8
C1—C2—C3112.40 (11)H7A—C7—H7B107.7
C1—C2—H2A123.8N1—C8—H8A109.5
C3—C2—H2A123.8N1—C8—H8B109.5
C4—C3—C2112.10 (11)H8A—C8—H8B109.5
C4—C3—H3A124.0N1—C8—H8C109.5
C2—C3—H3A124.0H8A—C8—H8C109.5
C3—C4—C5129.24 (11)H8B—C8—H8C109.5
C3—C4—S1111.43 (9)N1—C9—H9A109.5
C5—C4—S1119.33 (9)N1—C9—H9B109.5
O1—C5—C4121.40 (11)H9A—C9—H9B109.5
O1—C5—C6121.64 (11)N1—C9—H9C109.5
C4—C5—C6116.96 (10)H9A—C9—H9C109.5
C7—C6—C5109.97 (9)H9B—C9—H9C109.5
C4—S1—C1—C2−0.93 (11)S1—C4—C5—O1−3.55 (17)
S1—C1—C2—C30.86 (15)C3—C4—C5—C6−4.03 (19)
C1—C2—C3—C4−0.29 (16)S1—C4—C5—C6175.70 (8)
C2—C3—C4—C5179.34 (12)O1—C5—C6—C76.42 (16)
C2—C3—C4—S1−0.40 (14)C4—C5—C6—C7−172.82 (10)
C1—S1—C4—C30.75 (10)C8—N1—C7—C6−55.48 (14)
C1—S1—C4—C5−179.02 (10)C9—N1—C7—C6−179.79 (11)
C3—C4—C5—O1176.73 (13)C5—C6—C7—N1−172.73 (10)
Cg1 is the centroid of the S1/C1–C4 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl10.87 (1)2.17 (1)3.0317 (11)171.(2)
C1—H1A···Cl1i0.952.823.5641 (13)136.
C6—H6A···Cg1ii0.992.973.8183 (13)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1/C1–C4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl10.87 (1)2.17 (1)3.0317 (11)171 (2)
C1—H1A⋯Cl1i0.952.823.5641 (13)136
C6—H6ACg1ii0.992.973.8183 (13)144

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Duloxetine hydrochloride.

Authors:  Anathea B Waitekus; Peter Kirkpatrick
Journal:  Nat Rev Drug Discov       Date:  2004-11       Impact factor: 84.694

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Duloxetine hydro-chloride.

Authors:  Mohan Bhadbhade; James Hook; Chris Marjo; Anne Rich; Qinghong Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

4.  N,N-Dimethyl-3-(1-naphth-yloxy)-3-(2-thien-yl)propan-1-amine.

Authors:  Xiao Tao; Xiao-Qing Zhang; Lin Yuan; Jin-Tang Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-06

Review 5.  Duloxetine: review of its pharmacology, and therapeutic use in depression and other psychiatric disorders.

Authors:  Sanjay Gupta; Nikhil Nihalani; Prakash Masand
Journal:  Ann Clin Psychiatry       Date:  2007 Apr-Jun       Impact factor: 1.567

  5 in total

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