| Literature DB >> 21577685 |
Mohan Bhadbhade, James Hook, Chris Marjo, Anne Rich, Qinghong Lin.
Abstract
THE TITLE COMPOUND [SYSTEMATIC NAME: N-methyl-3-(1-naphth-yloxy)-3-(2-thien-yl)propan-1-aminium chloride], C(18)H(20)NOS(+)·Cl(-), was crystallized from 1,4-dioxane. Twofold rotational disorder exhibited by the thio-phene ring in a 0.580 (5):0.420 (5) ratio represents two different conformations of the mol-ecule that exist in the same crystal form. The crystal structure contains strong N-H⋯Cl hydrogen bonds.Entities:
Year: 2009 PMID: 21577685 PMCID: PMC2970009 DOI: 10.1107/S1600536809033996
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H20NOS+·Cl− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1635 reflections |
| θ = 2.3–22.1° | |
| µ = 0.35 mm−1 | |
| β = 109.432 (4)° | Thin Plates, colourless |
| 0.38 × 0.08 × 0.03 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 2947 independent reflections |
| Radiation source: fine-focus sealed tube | 2255 reflections with |
| graphite | |
| φ scans, and ω scans with κ offsets | θmax = 25.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 6386 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.005 | |
| 2947 reflections | Δρmax = 0.17 e Å−3 |
| 237 parameters | Δρmin = −0.21 e Å−3 |
| 110 restraints | Absolute structure: Flack (1983), 1309 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.05 (10) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.7076 (5) | 1.0388 (6) | 0.3732 (3) | 0.0414 (10) | |
| H1 | 0.6473 | 1.0546 | 0.3018 | 0.050* | |
| C2 | 0.8113 (5) | 1.1721 (7) | 0.4181 (3) | 0.0559 (13) | |
| H2 | 0.8222 | 1.2804 | 0.3779 | 0.067* | |
| C3 | 0.9031 (5) | 1.1525 (7) | 0.5234 (3) | 0.0498 (12) | |
| H3 | 0.9769 | 1.2456 | 0.5538 | 0.060* | |
| C4 | 0.8856 (4) | 0.9990 (6) | 0.5818 (3) | 0.0404 (10) | |
| H4 | 0.9465 | 0.9877 | 0.6534 | 0.048* | |
| C5 | 0.7784 (4) | 0.8557 (6) | 0.5376 (2) | 0.0333 (8) | |
| C6 | 0.7619 (5) | 0.6944 (7) | 0.5957 (3) | 0.0488 (12) | |
| H6 | 0.8217 | 0.6804 | 0.6674 | 0.059* | |
| C7 | 0.6613 (5) | 0.5596 (7) | 0.5500 (3) | 0.0594 (14) | |
| H7 | 0.6518 | 0.4508 | 0.5904 | 0.071* | |
| C8 | 0.5696 (5) | 0.5748 (7) | 0.4444 (3) | 0.0453 (11) | |
| H8 | 0.5007 | 0.4764 | 0.4134 | 0.054* | |
| C9 | 0.5811 (4) | 0.7331 (5) | 0.3870 (3) | 0.0302 (9) | |
| C10 | 0.6874 (4) | 0.8761 (5) | 0.4309 (3) | 0.0285 (8) | |
| C11 | 0.3962 (4) | 0.6244 (5) | 0.2248 (3) | 0.0287 (8) | |
| H11 | 0.3506 | 0.5543 | 0.2709 | 0.034* | |
| C16 | 0.2800 (4) | 0.7340 (5) | 0.1395 (3) | 0.0334 (9) | |
| H16A | 0.2233 | 0.6416 | 0.0851 | 0.040* | |
| H16B | 0.3277 | 0.8263 | 0.1051 | 0.040* | |
| C17 | 0.1769 (4) | 0.8439 (7) | 0.1826 (3) | 0.0395 (9) | |
| H17A | 0.1988 | 0.8111 | 0.2581 | 0.047* | |
| H17B | 0.1925 | 0.9844 | 0.1776 | 0.047* | |
| C18 | −0.0810 (4) | 0.8802 (6) | 0.1698 (3) | 0.0449 (10) | |
| H18A | −0.0634 | 0.8265 | 0.2405 | 0.067* | |
| H18B | −0.1802 | 0.8483 | 0.1246 | 0.067* | |
| H18C | −0.0694 | 1.0209 | 0.1746 | 0.067* | |
| Cl1 | 0.02776 (10) | 0.35210 (15) | 0.11567 (7) | 0.0385 (3) | |
| N1 | 0.0237 (3) | 0.7976 (4) | 0.1242 (2) | 0.0334 (7) | |
| H1A | 0.0015 | 0.8416 | 0.0560 | 0.040* | |
| H1B | 0.0131 | 0.6655 | 0.1214 | 0.040* | |
| O1 | 0.4920 (3) | 0.7711 (3) | 0.28494 (18) | 0.0335 (6) | |
| C12 | 0.4783 (4) | 0.4840 (6) | 0.1806 (3) | 0.0304 (9) | |
| S1A | 0.4000 (4) | 0.2836 (6) | 0.1112 (4) | 0.0390 (8) | 0.580 (5) |
| C13A | 0.5587 (15) | 0.220 (3) | 0.088 (2) | 0.043 (2) | 0.580 (5) |
| H13A | 0.5703 | 0.1075 | 0.0508 | 0.051* | 0.58 |
| C14A | 0.6634 (16) | 0.353 (2) | 0.1292 (18) | 0.045 (2) | 0.580 (5) |
| H14A | 0.7575 | 0.3491 | 0.1227 | 0.054* | 0.58 |
| C15A | 0.6158 (17) | 0.500 (3) | 0.184 (2) | 0.042 (4) | 0.580 (5) |
| H15A | 0.6774 | 0.6027 | 0.2199 | 0.051* | 0.58 |
| S1B | 0.6515 (6) | 0.5208 (10) | 0.1826 (7) | 0.0410 (14) | 0.420 (5) |
| C13B | 0.656 (2) | 0.310 (3) | 0.119 (2) | 0.042 (3) | 0.420 (5) |
| H13B | 0.7390 | 0.2624 | 0.1043 | 0.051* | 0.42 |
| C14B | 0.526 (2) | 0.221 (4) | 0.091 (3) | 0.045 (3) | 0.420 (5) |
| H14B | 0.5030 | 0.1062 | 0.0498 | 0.054* | 0.42 |
| C15B | 0.427 (2) | 0.318 (3) | 0.131 (2) | 0.053 (5) | 0.420 (5) |
| H15B | 0.3325 | 0.2691 | 0.1237 | 0.063* | 0.42 |
| C12 | 0.030 (2) | 0.034 (2) | 0.0272 (18) | −0.0013 (18) | 0.0086 (16) | 0.0036 (16) |
| S1A | 0.0360 (14) | 0.0354 (13) | 0.0453 (18) | 0.0021 (11) | 0.0130 (14) | −0.0108 (10) |
| C13A | 0.046 (6) | 0.048 (5) | 0.038 (5) | 0.018 (5) | 0.019 (6) | −0.002 (4) |
| C14A | 0.039 (4) | 0.060 (7) | 0.042 (5) | 0.009 (4) | 0.021 (4) | −0.001 (5) |
| C15A | 0.044 (9) | 0.049 (6) | 0.042 (5) | −0.005 (6) | 0.025 (6) | −0.001 (4) |
| S1B | 0.024 (2) | 0.056 (2) | 0.042 (2) | −0.0013 (18) | 0.0099 (19) | 0.0093 (17) |
| C13B | 0.042 (5) | 0.051 (6) | 0.037 (7) | 0.009 (5) | 0.017 (5) | 0.015 (5) |
| C14B | 0.045 (7) | 0.050 (6) | 0.036 (6) | 0.005 (6) | 0.010 (6) | 0.003 (5) |
| C15B | 0.043 (7) | 0.062 (12) | 0.055 (11) | 0.005 (7) | 0.018 (8) | 0.003 (8) |
| C1 | 0.047 (2) | 0.038 (2) | 0.0303 (19) | −0.007 (2) | 0.0003 (18) | 0.0082 (18) |
| C2 | 0.062 (3) | 0.048 (3) | 0.043 (2) | −0.020 (3) | −0.002 (2) | 0.010 (2) |
| C3 | 0.051 (3) | 0.045 (3) | 0.043 (2) | −0.017 (2) | 0.002 (2) | −0.003 (2) |
| C4 | 0.040 (2) | 0.046 (2) | 0.0269 (19) | −0.002 (2) | −0.0007 (17) | −0.0027 (19) |
| C5 | 0.034 (2) | 0.0372 (19) | 0.0269 (17) | −0.003 (2) | 0.0081 (15) | −0.001 (2) |
| C6 | 0.046 (3) | 0.058 (3) | 0.032 (2) | −0.010 (2) | −0.0012 (19) | 0.019 (2) |
| C7 | 0.060 (3) | 0.061 (3) | 0.042 (2) | −0.020 (3) | −0.004 (2) | 0.028 (2) |
| C8 | 0.044 (2) | 0.043 (2) | 0.040 (2) | −0.014 (2) | 0.0024 (19) | 0.010 (2) |
| C9 | 0.032 (2) | 0.032 (2) | 0.0261 (18) | 0.0051 (17) | 0.0090 (15) | 0.0010 (15) |
| C10 | 0.0295 (19) | 0.031 (2) | 0.0250 (16) | 0.0001 (17) | 0.0092 (14) | −0.0023 (16) |
| C11 | 0.026 (2) | 0.031 (2) | 0.0268 (18) | −0.0037 (15) | 0.0066 (16) | 0.0011 (14) |
| C16 | 0.029 (2) | 0.035 (2) | 0.0308 (19) | 0.0003 (18) | 0.0029 (16) | −0.0060 (16) |
| C17 | 0.033 (2) | 0.040 (2) | 0.0382 (19) | 0.002 (2) | 0.0021 (16) | −0.015 (2) |
| C18 | 0.039 (2) | 0.040 (2) | 0.060 (2) | 0.003 (2) | 0.023 (2) | 0.000 (2) |
| Cl1 | 0.0438 (6) | 0.0345 (5) | 0.0345 (5) | −0.0070 (5) | 0.0095 (4) | 0.0009 (4) |
| N1 | 0.0348 (17) | 0.0295 (17) | 0.0335 (16) | −0.0006 (14) | 0.0080 (14) | 0.0003 (13) |
| O1 | 0.0365 (14) | 0.0308 (13) | 0.0254 (12) | −0.0054 (12) | −0.0003 (11) | −0.0003 (10) |
| C1—C2 | 1.353 (6) | C17—H17A | 0.9900 |
| C1—C10 | 1.418 (5) | C17—H17B | 0.9900 |
| C1—H1 | 0.9500 | C18—N1 | 1.469 (5) |
| C2—C3 | 1.406 (5) | C18—H18A | 0.9800 |
| C2—H2 | 0.9500 | C18—H18B | 0.9800 |
| C3—C4 | 1.364 (6) | C18—H18C | 0.9800 |
| C3—H3 | 0.9500 | N1—H1A | 0.9200 |
| C4—C5 | 1.420 (6) | N1—H1B | 0.9200 |
| C4—H4 | 0.9500 | C12—C15A | 1.332 (14) |
| C5—C6 | 1.402 (6) | C12—C15B | 1.341 (16) |
| C5—C10 | 1.418 (4) | C12—C11 | 1.501 (5) |
| C6—C7 | 1.344 (6) | C12—S1B | 1.699 (7) |
| C6—H6 | 0.9500 | C12—S1A | 1.703 (5) |
| C7—C8 | 1.406 (5) | S1A—C13A | 1.734 (10) |
| C7—H7 | 0.9500 | C13A—C14A | 1.351 (10) |
| C8—C9 | 1.365 (5) | C13A—H13A | 0.9500 |
| C8—H8 | 0.9500 | C14A—C15A | 1.420 (14) |
| C9—O1 | 1.381 (4) | C14A—H14A | 0.9500 |
| C9—C10 | 1.413 (5) | C15A—H15A | 0.9500 |
| C11—O1 | 1.433 (4) | S1B—C13B | 1.699 (14) |
| C11—C16 | 1.519 (5) | C13B—C14B | 1.351 (11) |
| C11—H11 | 1.0000 | C13B—H13B | 0.9500 |
| C16—C17 | 1.520 (5) | C14B—C15B | 1.421 (15) |
| C16—H16A | 0.9900 | C14B—H14B | 0.9500 |
| C16—H16B | 0.9900 | C15B—H15B | 0.9500 |
| C17—N1 | 1.472 (4) | ||
| C2—C1—C10 | 121.2 (3) | N1—C17—H17B | 109.3 |
| C2—C1—H1 | 119.4 | C16—C17—H17B | 109.3 |
| C10—C1—H1 | 119.4 | H17A—C17—H17B | 107.9 |
| C1—C2—C3 | 120.9 (4) | N1—C18—H18A | 109.5 |
| C1—C2—H2 | 119.5 | N1—C18—H18B | 109.5 |
| C3—C2—H2 | 119.5 | H18A—C18—H18B | 109.5 |
| C4—C3—C2 | 119.5 (4) | N1—C18—H18C | 109.5 |
| C4—C3—H3 | 120.2 | H18A—C18—H18C | 109.5 |
| C2—C3—H3 | 120.2 | H18B—C18—H18C | 109.5 |
| C3—C4—C5 | 121.3 (3) | C18—N1—C17 | 114.6 (3) |
| C3—C4—H4 | 119.3 | C18—N1—H1A | 108.6 |
| C5—C4—H4 | 119.3 | C17—N1—H1A | 108.6 |
| C6—C5—C10 | 119.5 (4) | C18—N1—H1B | 108.6 |
| C6—C5—C4 | 121.9 (3) | C17—N1—H1B | 108.6 |
| C10—C5—C4 | 118.6 (3) | H1A—N1—H1B | 107.6 |
| C7—C6—C5 | 120.0 (4) | C9—O1—C11 | 120.0 (3) |
| C7—C6—H6 | 120.0 | C15A—C12—C15B | 107.3 (10) |
| C5—C6—H6 | 120.0 | C15A—C12—C11 | 126.5 (7) |
| C6—C7—C8 | 122.0 (4) | C15B—C12—C11 | 126.2 (8) |
| C6—C7—H7 | 119.0 | C15B—C12—S1B | 110.1 (8) |
| C8—C7—H7 | 119.0 | C11—C12—S1B | 123.7 (3) |
| C9—C8—C7 | 119.0 (4) | C15A—C12—S1A | 110.5 (7) |
| C9—C8—H8 | 120.5 | C11—C12—S1A | 122.9 (3) |
| C7—C8—H8 | 120.5 | S1B—C12—S1A | 113.1 (3) |
| C8—C9—O1 | 124.8 (3) | C12—S1A—C13A | 92.4 (4) |
| C8—C9—C10 | 120.9 (3) | C14A—C13A—S1A | 110.4 (8) |
| O1—C9—C10 | 114.4 (3) | C14A—C13A—H13A | 124.8 |
| C9—C10—C1 | 123.0 (3) | S1A—C13A—H13A | 124.8 |
| C9—C10—C5 | 118.5 (3) | C13A—C14A—C15A | 111.8 (10) |
| C1—C10—C5 | 118.5 (3) | C13A—C14A—H14A | 124.1 |
| O1—C11—C12 | 110.4 (3) | C15A—C14A—H14A | 124.1 |
| O1—C11—C16 | 104.7 (3) | C12—C15A—C14A | 114.8 (11) |
| C12—C11—C16 | 112.8 (3) | C12—C15A—H15A | 122.6 |
| O1—C11—H11 | 109.6 | C14A—C15A—H15A | 122.6 |
| C12—C11—H11 | 109.6 | C13B—S1B—C12 | 93.3 (7) |
| C16—C11—H11 | 109.6 | C14B—C13B—S1B | 110.6 (11) |
| C11—C16—C17 | 112.6 (3) | C14B—C13B—H13B | 124.7 |
| C11—C16—H16A | 109.1 | S1B—C13B—H13B | 124.7 |
| C17—C16—H16A | 109.1 | C13B—C14B—C15B | 112.1 (12) |
| C11—C16—H16B | 109.1 | C13B—C14B—H14B | 124.0 |
| C17—C16—H16B | 109.1 | C15B—C14B—H14B | 124.0 |
| H16A—C16—H16B | 107.8 | C12—C15B—C14B | 113.7 (12) |
| N1—C17—C16 | 111.7 (3) | C12—C15B—H15B | 123.2 |
| N1—C17—H17A | 109.3 | C14B—C15B—H15B | 123.2 |
| C16—C17—H17A | 109.3 |
| H··· | ||||
| N1—H1A···Cl1i | 0.92 | 2.23 | 3.113 (3) | 161 |
| N1—H1B···Cl1 | 0.92 | 2.18 | 3.087 (3) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.92 | 2.23 | 3.113 (3) | 161 |
| N1—H1 | 0.92 | 2.18 | 3.087 (3) | 170 |
Symmetry code: (i) .