Literature DB >> 21577685

Duloxetine hydro-chloride.

Mohan Bhadbhade, James Hook, Chris Marjo, Anne Rich, Qinghong Lin.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: N-methyl-3-(1-naphth-yloxy)-3-(2-thien-yl)propan-1-aminium chloride], C(18)H(20)NOS(+)·Cl(-), was crystallized from 1,4-dioxane. Twofold rotational disorder exhibited by the thio-phene ring in a 0.580 (5):0.420 (5) ratio represents two different conformations of the mol-ecule that exist in the same crystal form. The crystal structure contains strong N-H⋯Cl hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577685      PMCID: PMC2970009          DOI: 10.1107/S1600536809033996

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For therapeutic properties of duloxetine hydro­chloride, see Waitekus & Kirkpatrick (2004 ▶). For related structures, see: Brenna et al. (2007 ▶); Tao et al. (2008 ▶). The title compound is reported to have different polymorphs on the basis of X-ray powder diffraction data, see: Ini et al. (2006 ▶).

Experimental

Crystal data

C18H20NOS+·Cl− M = 333.86 Monoclinic, a = 9.7453 (10) Å b = 6.9227 (7) Å c = 13.4247 (16) Å β = 109.432 (4)° V = 854.09 (16) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 150 K 0.38 × 0.08 × 0.03 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.879, T max = 0.990 6386 measured reflections 2947 independent reflections 2255 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.131 S = 0.79 2947 reflections 237 parameters 110 restraints H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1309 Friedel pairs Flack parameter: −0.05 (10) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033996/bg2289sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033996/bg2289Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H20NOS+·ClF(000) = 352
Mr = 333.86Dx = 1.298 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1635 reflections
a = 9.7453 (10) Åθ = 2.3–22.1°
b = 6.9227 (7) ŵ = 0.35 mm1
c = 13.4247 (16) ÅT = 150 K
β = 109.432 (4)°Thin Plates, colourless
V = 854.09 (16) Å30.38 × 0.08 × 0.03 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer2947 independent reflections
Radiation source: fine-focus sealed tube2255 reflections with I > 2σ(I)
graphiteRint = 0.058
φ scans, and ω scans with κ offsetsθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −10→11
Tmin = 0.879, Tmax = 0.990k = −8→8
6386 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.1P)2 + 0.0292P] where P = (Fo2 + 2Fc2)/3
S = 0.79(Δ/σ)max = 0.005
2947 reflectionsΔρmax = 0.17 e Å3
237 parametersΔρmin = −0.21 e Å3
110 restraintsAbsolute structure: Flack (1983), 1309 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.05 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.7076 (5)1.0388 (6)0.3732 (3)0.0414 (10)
H10.64731.05460.30180.050*
C20.8113 (5)1.1721 (7)0.4181 (3)0.0559 (13)
H20.82221.28040.37790.067*
C30.9031 (5)1.1525 (7)0.5234 (3)0.0498 (12)
H30.97691.24560.55380.060*
C40.8856 (4)0.9990 (6)0.5818 (3)0.0404 (10)
H40.94650.98770.65340.048*
C50.7784 (4)0.8557 (6)0.5376 (2)0.0333 (8)
C60.7619 (5)0.6944 (7)0.5957 (3)0.0488 (12)
H60.82170.68040.66740.059*
C70.6613 (5)0.5596 (7)0.5500 (3)0.0594 (14)
H70.65180.45080.59040.071*
C80.5696 (5)0.5748 (7)0.4444 (3)0.0453 (11)
H80.50070.47640.41340.054*
C90.5811 (4)0.7331 (5)0.3870 (3)0.0302 (9)
C100.6874 (4)0.8761 (5)0.4309 (3)0.0285 (8)
C110.3962 (4)0.6244 (5)0.2248 (3)0.0287 (8)
H110.35060.55430.27090.034*
C160.2800 (4)0.7340 (5)0.1395 (3)0.0334 (9)
H16A0.22330.64160.08510.040*
H16B0.32770.82630.10510.040*
C170.1769 (4)0.8439 (7)0.1826 (3)0.0395 (9)
H17A0.19880.81110.25810.047*
H17B0.19250.98440.17760.047*
C18−0.0810 (4)0.8802 (6)0.1698 (3)0.0449 (10)
H18A−0.06340.82650.24050.067*
H18B−0.18020.84830.12460.067*
H18C−0.06941.02090.17460.067*
Cl10.02776 (10)0.35210 (15)0.11567 (7)0.0385 (3)
N10.0237 (3)0.7976 (4)0.1242 (2)0.0334 (7)
H1A0.00150.84160.05600.040*
H1B0.01310.66550.12140.040*
O10.4920 (3)0.7711 (3)0.28494 (18)0.0335 (6)
C120.4783 (4)0.4840 (6)0.1806 (3)0.0304 (9)
S1A0.4000 (4)0.2836 (6)0.1112 (4)0.0390 (8)0.580 (5)
C13A0.5587 (15)0.220 (3)0.088 (2)0.043 (2)0.580 (5)
H13A0.57030.10750.05080.051*0.58
C14A0.6634 (16)0.353 (2)0.1292 (18)0.045 (2)0.580 (5)
H14A0.75750.34910.12270.054*0.58
C15A0.6158 (17)0.500 (3)0.184 (2)0.042 (4)0.580 (5)
H15A0.67740.60270.21990.051*0.58
S1B0.6515 (6)0.5208 (10)0.1826 (7)0.0410 (14)0.420 (5)
C13B0.656 (2)0.310 (3)0.119 (2)0.042 (3)0.420 (5)
H13B0.73900.26240.10430.051*0.42
C14B0.526 (2)0.221 (4)0.091 (3)0.045 (3)0.420 (5)
H14B0.50300.10620.04980.054*0.42
C15B0.427 (2)0.318 (3)0.131 (2)0.053 (5)0.420 (5)
H15B0.33250.26910.12370.063*0.42
U11U22U33U12U13U23
C120.030 (2)0.034 (2)0.0272 (18)−0.0013 (18)0.0086 (16)0.0036 (16)
S1A0.0360 (14)0.0354 (13)0.0453 (18)0.0021 (11)0.0130 (14)−0.0108 (10)
C13A0.046 (6)0.048 (5)0.038 (5)0.018 (5)0.019 (6)−0.002 (4)
C14A0.039 (4)0.060 (7)0.042 (5)0.009 (4)0.021 (4)−0.001 (5)
C15A0.044 (9)0.049 (6)0.042 (5)−0.005 (6)0.025 (6)−0.001 (4)
S1B0.024 (2)0.056 (2)0.042 (2)−0.0013 (18)0.0099 (19)0.0093 (17)
C13B0.042 (5)0.051 (6)0.037 (7)0.009 (5)0.017 (5)0.015 (5)
C14B0.045 (7)0.050 (6)0.036 (6)0.005 (6)0.010 (6)0.003 (5)
C15B0.043 (7)0.062 (12)0.055 (11)0.005 (7)0.018 (8)0.003 (8)
C10.047 (2)0.038 (2)0.0303 (19)−0.007 (2)0.0003 (18)0.0082 (18)
C20.062 (3)0.048 (3)0.043 (2)−0.020 (3)−0.002 (2)0.010 (2)
C30.051 (3)0.045 (3)0.043 (2)−0.017 (2)0.002 (2)−0.003 (2)
C40.040 (2)0.046 (2)0.0269 (19)−0.002 (2)−0.0007 (17)−0.0027 (19)
C50.034 (2)0.0372 (19)0.0269 (17)−0.003 (2)0.0081 (15)−0.001 (2)
C60.046 (3)0.058 (3)0.032 (2)−0.010 (2)−0.0012 (19)0.019 (2)
C70.060 (3)0.061 (3)0.042 (2)−0.020 (3)−0.004 (2)0.028 (2)
C80.044 (2)0.043 (2)0.040 (2)−0.014 (2)0.0024 (19)0.010 (2)
C90.032 (2)0.032 (2)0.0261 (18)0.0051 (17)0.0090 (15)0.0010 (15)
C100.0295 (19)0.031 (2)0.0250 (16)0.0001 (17)0.0092 (14)−0.0023 (16)
C110.026 (2)0.031 (2)0.0268 (18)−0.0037 (15)0.0066 (16)0.0011 (14)
C160.029 (2)0.035 (2)0.0308 (19)0.0003 (18)0.0029 (16)−0.0060 (16)
C170.033 (2)0.040 (2)0.0382 (19)0.002 (2)0.0021 (16)−0.015 (2)
C180.039 (2)0.040 (2)0.060 (2)0.003 (2)0.023 (2)0.000 (2)
Cl10.0438 (6)0.0345 (5)0.0345 (5)−0.0070 (5)0.0095 (4)0.0009 (4)
N10.0348 (17)0.0295 (17)0.0335 (16)−0.0006 (14)0.0080 (14)0.0003 (13)
O10.0365 (14)0.0308 (13)0.0254 (12)−0.0054 (12)−0.0003 (11)−0.0003 (10)
C1—C21.353 (6)C17—H17A0.9900
C1—C101.418 (5)C17—H17B0.9900
C1—H10.9500C18—N11.469 (5)
C2—C31.406 (5)C18—H18A0.9800
C2—H20.9500C18—H18B0.9800
C3—C41.364 (6)C18—H18C0.9800
C3—H30.9500N1—H1A0.9200
C4—C51.420 (6)N1—H1B0.9200
C4—H40.9500C12—C15A1.332 (14)
C5—C61.402 (6)C12—C15B1.341 (16)
C5—C101.418 (4)C12—C111.501 (5)
C6—C71.344 (6)C12—S1B1.699 (7)
C6—H60.9500C12—S1A1.703 (5)
C7—C81.406 (5)S1A—C13A1.734 (10)
C7—H70.9500C13A—C14A1.351 (10)
C8—C91.365 (5)C13A—H13A0.9500
C8—H80.9500C14A—C15A1.420 (14)
C9—O11.381 (4)C14A—H14A0.9500
C9—C101.413 (5)C15A—H15A0.9500
C11—O11.433 (4)S1B—C13B1.699 (14)
C11—C161.519 (5)C13B—C14B1.351 (11)
C11—H111.0000C13B—H13B0.9500
C16—C171.520 (5)C14B—C15B1.421 (15)
C16—H16A0.9900C14B—H14B0.9500
C16—H16B0.9900C15B—H15B0.9500
C17—N11.472 (4)
C2—C1—C10121.2 (3)N1—C17—H17B109.3
C2—C1—H1119.4C16—C17—H17B109.3
C10—C1—H1119.4H17A—C17—H17B107.9
C1—C2—C3120.9 (4)N1—C18—H18A109.5
C1—C2—H2119.5N1—C18—H18B109.5
C3—C2—H2119.5H18A—C18—H18B109.5
C4—C3—C2119.5 (4)N1—C18—H18C109.5
C4—C3—H3120.2H18A—C18—H18C109.5
C2—C3—H3120.2H18B—C18—H18C109.5
C3—C4—C5121.3 (3)C18—N1—C17114.6 (3)
C3—C4—H4119.3C18—N1—H1A108.6
C5—C4—H4119.3C17—N1—H1A108.6
C6—C5—C10119.5 (4)C18—N1—H1B108.6
C6—C5—C4121.9 (3)C17—N1—H1B108.6
C10—C5—C4118.6 (3)H1A—N1—H1B107.6
C7—C6—C5120.0 (4)C9—O1—C11120.0 (3)
C7—C6—H6120.0C15A—C12—C15B107.3 (10)
C5—C6—H6120.0C15A—C12—C11126.5 (7)
C6—C7—C8122.0 (4)C15B—C12—C11126.2 (8)
C6—C7—H7119.0C15B—C12—S1B110.1 (8)
C8—C7—H7119.0C11—C12—S1B123.7 (3)
C9—C8—C7119.0 (4)C15A—C12—S1A110.5 (7)
C9—C8—H8120.5C11—C12—S1A122.9 (3)
C7—C8—H8120.5S1B—C12—S1A113.1 (3)
C8—C9—O1124.8 (3)C12—S1A—C13A92.4 (4)
C8—C9—C10120.9 (3)C14A—C13A—S1A110.4 (8)
O1—C9—C10114.4 (3)C14A—C13A—H13A124.8
C9—C10—C1123.0 (3)S1A—C13A—H13A124.8
C9—C10—C5118.5 (3)C13A—C14A—C15A111.8 (10)
C1—C10—C5118.5 (3)C13A—C14A—H14A124.1
O1—C11—C12110.4 (3)C15A—C14A—H14A124.1
O1—C11—C16104.7 (3)C12—C15A—C14A114.8 (11)
C12—C11—C16112.8 (3)C12—C15A—H15A122.6
O1—C11—H11109.6C14A—C15A—H15A122.6
C12—C11—H11109.6C13B—S1B—C1293.3 (7)
C16—C11—H11109.6C14B—C13B—S1B110.6 (11)
C11—C16—C17112.6 (3)C14B—C13B—H13B124.7
C11—C16—H16A109.1S1B—C13B—H13B124.7
C17—C16—H16A109.1C13B—C14B—C15B112.1 (12)
C11—C16—H16B109.1C13B—C14B—H14B124.0
C17—C16—H16B109.1C15B—C14B—H14B124.0
H16A—C16—H16B107.8C12—C15B—C14B113.7 (12)
N1—C17—C16111.7 (3)C12—C15B—H15B123.2
N1—C17—H17A109.3C14B—C15B—H15B123.2
C16—C17—H17A109.3
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1i0.922.233.113 (3)161
N1—H1B···Cl10.922.183.087 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.922.233.113 (3)161
N1—H1B⋯Cl10.922.183.087 (3)170

Symmetry code: (i) .

  4 in total

1.  Duloxetine hydrochloride.

Authors:  Anathea B Waitekus; Peter Kirkpatrick
Journal:  Nat Rev Drug Discov       Date:  2004-11       Impact factor: 84.694

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Isolation and characterisation of a phenolic impurity in a commercial sample of duloxetine.

Authors:  Elisabetta Brenna; Samuele Frigoli; Giovanni Fronza; Claudio Fuganti; Luciana Malpezzi
Journal:  J Pharm Biomed Anal       Date:  2006-12-18       Impact factor: 3.935

4.  N,N-Dimethyl-3-(1-naphth-yloxy)-3-(2-thien-yl)propan-1-amine.

Authors:  Xiao Tao; Xiao-Qing Zhang; Lin Yuan; Jin-Tang Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-06
  4 in total
  1 in total

1.  N,N-Dimethyl-3-oxo-3-(thio-phen-2-yl)propanaminium chloride.

Authors:  A S Dayananda; Jerry P Jasinski; James A Golen; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-06
  1 in total

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