Literature DB >> 21201896

N,N-Dimethyl-3-(1-naphth-yloxy)-3-(2-thien-yl)propan-1-amine.

Xiao Tao, Xiao-Qing Zhang, Lin Yuan, Jin-Tang Wang.   

Abstract

The title compound, C(19)H(21)NOS, is an inter-mediate for the synthesis of duloxetine hydro-chloride. In the mol-ecular structure, the thio-phene and naphthalene ring systems make a dihedral angle of 87.5°. All bond lengths and angles involving heteroatoms are as expected. In the crystal structure, no classical hydrogen bonds are found.

Entities:  

Year:  2008        PMID: 21201896      PMCID: PMC2960821          DOI: 10.1107/S1600536808003255

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of duloxetine see: Deeter et al. (1990 ▶). For related hydroxy derivatives of the title mol­ecule, see: Tao, Bin et al. (2006 ▶); Tao, Li et al. (2006 ▶).

Experimental

Crystal data

C19H21NOS M = 311.43 Monoclinic, a = 9.6140 (19) Å b = 18.578 (4) Å c = 9.905 (2) Å β = 104.53 (3)° V = 1712.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 293 (2) K 0.40 × 0.30 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.928, T max = 0.981 3550 measured reflections 3352 independent reflections 2009 reflections with I > 2s(I) R int = 0.038 3 standard reflections every 200 reflections intensity decay: <1%

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.194 S = 1.04 3352 reflections 199 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1981 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808003255/bh2157sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808003255/bh2157Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H21NOSF000 = 664
Mr = 311.43Dx = 1.208 Mg m3
Monoclinic, P21/nMelting point = 386–388 K
Hall symbol: -P 2ynMo Kα radiation λ = 0.71073 Å
a = 9.6140 (19) ÅCell parameters from 25 reflections
b = 18.578 (4) Åθ = 10–13º
c = 9.905 (2) ŵ = 0.19 mm1
β = 104.53 (3)ºT = 293 (2) K
V = 1712.5 (6) Å3Block, brown
Z = 40.40 × 0.30 × 0.10 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.038
Radiation source: fine-focus sealed tubeθmax = 26.0º
Monochromator: graphiteθmin = 2.4º
T = 293(2) Kh = 0→11
ω/2θ scansk = 0→22
Absorption correction: ψ scan(North et al., 1968)l = −12→11
Tmin = 0.928, Tmax = 0.9813 standard reflections
3550 measured reflections every 200 reflections
3352 independent reflections intensity decay: <1%
2009 reflections with I > 2s(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.070H-atom parameters constrained
wR(F2) = 0.194  w = 1/[σ2(Fo2) + (0.08P)2 + 0.85P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3352 reflectionsΔρmax = 0.45 e Å3
199 parametersΔρmin = −0.32 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
S0.03342 (12)0.25309 (6)0.17997 (10)0.0561 (3)
O0.1693 (2)0.34125 (12)0.0007 (2)0.0445 (6)
N−0.1370 (3)0.47356 (16)−0.2560 (3)0.0517 (8)
C1−0.2401 (5)0.4470 (2)−0.3807 (5)0.0777 (14)
H1A−0.27770.4015−0.36070.117*
H1B−0.19290.4412−0.45470.117*
H1C−0.31730.4809−0.40860.117*
C2−0.0803 (5)0.5421 (2)−0.2843 (5)0.0753 (13)
H2A−0.01330.5593−0.20160.113*
H2B−0.15750.5760−0.31230.113*
H2C−0.03220.5367−0.35770.113*
C3−0.0227 (4)0.4218 (2)−0.2029 (4)0.0517 (10)
H3A0.05590.4461−0.13830.062*
H3B0.01310.4041−0.28000.062*
C4−0.0708 (4)0.3584 (2)−0.1295 (4)0.0506 (10)
H4A−0.10160.3758−0.04930.061*
H4B−0.15270.3357−0.19240.061*
C50.0463 (4)0.30309 (19)−0.0816 (4)0.0439 (9)
H5A0.07110.2822−0.16340.053*
C60.0029 (4)0.24339 (18)0.0033 (4)0.0406 (8)
C7−0.0719 (4)0.17959 (18)−0.0465 (4)0.043
H7A−0.09970.1649−0.13920.052*
C8−0.0976 (4)0.1414 (2)0.0708 (4)0.0542 (10)
H8A−0.14470.09730.06200.065*
C9−0.0482 (4)0.1743 (2)0.1943 (4)0.0510 (10)
H9A−0.05800.15560.27850.061*
C100.3039 (4)0.31259 (19)0.0180 (3)0.0403 (8)
C110.3328 (4)0.2446 (2)−0.0182 (4)0.0498 (9)
H11A0.25840.2131−0.05720.060*
C120.4781 (5)0.2225 (2)0.0045 (4)0.0574 (11)
H12A0.49820.1762−0.02110.069*
C130.5882 (5)0.2673 (2)0.0627 (4)0.0603 (11)
H13A0.68250.25150.07610.072*
C140.5612 (4)0.3372 (2)0.1027 (4)0.0496 (10)
C150.6714 (4)0.3854 (3)0.1646 (4)0.0677 (13)
H15A0.76650.37040.18140.081*
C160.6431 (5)0.4528 (3)0.2002 (5)0.0746 (13)
H16A0.71850.48360.23970.089*
C170.5021 (5)0.4765 (2)0.1781 (4)0.0655 (12)
H17A0.48370.52300.20400.079*
C180.3900 (4)0.4320 (2)0.1186 (4)0.0481 (9)
H18A0.29610.44850.10380.058*
C190.4161 (4)0.36147 (19)0.0798 (3)0.0409 (8)
U11U22U33U12U13U23
S0.0651 (7)0.0585 (6)0.0425 (5)−0.0028 (5)0.0094 (5)−0.0023 (5)
O0.0335 (13)0.0410 (14)0.0566 (15)−0.0007 (11)0.0070 (11)−0.0068 (11)
N0.0482 (19)0.0464 (18)0.058 (2)0.0008 (15)0.0083 (15)0.0088 (15)
C10.065 (3)0.070 (3)0.081 (3)−0.003 (2)−0.011 (2)0.018 (3)
C20.074 (3)0.054 (3)0.095 (4)−0.003 (2)0.017 (3)0.013 (3)
C30.041 (2)0.055 (2)0.057 (2)−0.0018 (18)0.0077 (18)0.0090 (19)
C40.040 (2)0.055 (2)0.053 (2)0.0009 (18)0.0033 (17)0.0086 (19)
C50.044 (2)0.045 (2)0.0414 (19)−0.0021 (17)0.0088 (16)−0.0027 (16)
C60.0393 (19)0.044 (2)0.0367 (17)0.0071 (16)0.0068 (14)0.0008 (16)
C70.0430.0430.0430.0000.0110.000
C80.060 (3)0.041 (2)0.059 (3)−0.0030 (19)0.012 (2)−0.0004 (19)
C90.062 (3)0.047 (2)0.046 (2)0.0077 (19)0.0170 (19)0.0069 (18)
C100.0380 (19)0.048 (2)0.0372 (19)0.0080 (16)0.0127 (15)0.0072 (16)
C110.055 (2)0.050 (2)0.048 (2)0.0039 (19)0.0182 (18)0.0050 (19)
C120.069 (3)0.056 (2)0.055 (2)0.022 (2)0.029 (2)0.011 (2)
C130.050 (2)0.084 (3)0.049 (2)0.025 (2)0.0167 (19)0.016 (2)
C140.041 (2)0.070 (3)0.039 (2)0.0091 (19)0.0118 (17)0.0115 (19)
C150.039 (2)0.103 (4)0.059 (3)−0.002 (2)0.008 (2)0.005 (3)
C160.051 (3)0.101 (4)0.067 (3)−0.019 (3)0.004 (2)−0.007 (3)
C170.064 (3)0.060 (3)0.069 (3)−0.009 (2)0.011 (2)−0.010 (2)
C180.046 (2)0.052 (2)0.046 (2)−0.0025 (18)0.0120 (17)0.0017 (18)
C190.0399 (19)0.050 (2)0.0324 (18)0.0023 (17)0.0085 (15)0.0062 (16)
S—C61.709 (3)C7—H7A0.9300
S—C91.683 (4)C8—C91.343 (5)
O—C101.370 (4)C8—H8A0.9300
O—C51.443 (4)C9—H9A0.9300
N—C21.440 (5)C10—C111.360 (5)
N—C31.455 (5)C10—C191.425 (5)
N—C11.462 (5)C11—C121.419 (5)
C1—H1A0.9600C11—H11A0.9300
C1—H1B0.9600C12—C131.357 (6)
C1—H1C0.9600C12—H12A0.9300
C2—H2A0.9600C13—C141.400 (5)
C2—H2B0.9600C13—H13A0.9300
C2—H2C0.9600C14—C151.406 (6)
C3—C41.517 (5)C14—C191.429 (5)
C3—H3A0.9700C15—C161.345 (6)
C3—H3B0.9700C15—H15A0.9300
C4—C51.511 (5)C16—C171.390 (6)
C4—H4A0.9700C16—H16A0.9300
C4—H4B0.9700C17—C181.369 (5)
C5—C61.513 (5)C17—H17A0.9300
C5—H5A0.9800C18—C191.405 (5)
C6—C71.410 (5)C18—H18A0.9300
C7—C81.435 (5)
C9—S—C691.74 (18)C6—C7—H7A126.0
C10—O—C5119.6 (3)C8—C7—H7A126.0
C2—N—C3111.4 (3)C9—C8—C7114.8 (3)
C2—N—C1110.1 (3)C9—C8—H8A122.6
C3—N—C1111.9 (3)C7—C8—H8A122.6
N—C1—H1A109.5C8—C9—S112.6 (3)
N—C1—H1B109.5C8—C9—H9A123.7
H1A—C1—H1B109.5S—C9—H9A123.7
N—C1—H1C109.5C11—C10—O125.2 (3)
H1A—C1—H1C109.5C11—C10—C19121.4 (3)
H1B—C1—H1C109.5O—C10—C19113.3 (3)
N—C2—H2A109.5C10—C11—C12119.1 (4)
N—C2—H2B109.5C10—C11—H11A120.5
H2A—C2—H2B109.5C12—C11—H11A120.5
N—C2—H2C109.5C13—C12—C11121.4 (4)
H2A—C2—H2C109.5C13—C12—H12A119.3
H2B—C2—H2C109.5C11—C12—H12A119.3
N—C3—C4113.1 (3)C12—C13—C14120.6 (4)
N—C3—H3A109.0C12—C13—H13A119.7
C4—C3—H3A109.0C14—C13—H13A119.7
N—C3—H3B109.0C13—C14—C15122.7 (4)
C4—C3—H3B109.0C13—C14—C19119.4 (4)
H3A—C3—H3B107.8C15—C14—C19117.8 (4)
C5—C4—C3112.7 (3)C16—C15—C14121.8 (4)
C5—C4—H4A109.1C16—C15—H15A119.1
C3—C4—H4A109.1C14—C15—H15A119.1
C5—C4—H4B109.1C15—C16—C17120.5 (4)
C3—C4—H4B109.1C15—C16—H16A119.8
H4A—C4—H4B107.8C17—C16—H16A119.8
O—C5—C4106.5 (3)C18—C17—C16120.5 (4)
O—C5—C6110.3 (3)C18—C17—H17A119.8
C4—C5—C6112.7 (3)C16—C17—H17A119.8
O—C5—H5A109.1C17—C18—C19120.4 (4)
C4—C5—H5A109.1C17—C18—H18A119.8
C6—C5—H5A109.1C19—C18—H18A119.8
C7—C6—C5127.5 (3)C18—C19—C10122.9 (3)
C7—C6—S112.9 (3)C18—C19—C14119.0 (3)
C5—C6—S119.4 (3)C10—C19—C14118.1 (3)
C6—C7—C8108.0 (3)
C2—N—C3—C4161.7 (4)C19—C10—C11—C12−0.9 (5)
C1—N—C3—C4−74.6 (4)C10—C11—C12—C130.7 (6)
N—C3—C4—C5176.9 (3)C11—C12—C13—C140.2 (6)
C10—O—C5—C4−157.5 (3)C12—C13—C14—C15179.4 (4)
C10—O—C5—C680.0 (4)C12—C13—C14—C19−1.0 (6)
C3—C4—C5—O53.6 (4)C13—C14—C15—C16178.9 (4)
C3—C4—C5—C6174.6 (3)C19—C14—C15—C16−0.8 (6)
O—C5—C6—C7−154.8 (3)C14—C15—C16—C170.9 (7)
C4—C5—C6—C786.3 (4)C15—C16—C17—C18−0.7 (7)
O—C5—C6—S30.0 (4)C16—C17—C18—C190.4 (6)
C4—C5—C6—S−88.8 (3)C17—C18—C19—C10179.7 (3)
C9—S—C6—C70.6 (3)C17—C18—C19—C14−0.3 (5)
C9—S—C6—C5176.4 (3)C11—C10—C19—C18−179.9 (3)
C5—C6—C7—C8−176.3 (3)O—C10—C19—C18−0.1 (5)
S—C6—C7—C8−0.8 (4)C11—C10—C19—C140.2 (5)
C6—C7—C8—C90.7 (5)O—C10—C19—C14180.0 (3)
C7—C8—C9—S−0.3 (4)C13—C14—C19—C18−179.2 (3)
C6—S—C9—C8−0.2 (3)C15—C14—C19—C180.5 (5)
C5—O—C10—C11−10.8 (5)C13—C14—C19—C100.8 (5)
C5—O—C10—C19169.4 (3)C15—C14—C19—C10−179.6 (3)
O—C10—C11—C12179.3 (3)
  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  Duloxetine hydro-chloride.

Authors:  Mohan Bhadbhade; James Hook; Chris Marjo; Anne Rich; Qinghong Lin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

2.  N,N-Dimethyl-3-oxo-3-(thio-phen-2-yl)propanaminium chloride.

Authors:  A S Dayananda; Jerry P Jasinski; James A Golen; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-06
  2 in total

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