Literature DB >> 21200672

Hydrogen-bonding patterns in the cocrystal 2-amino-4,6-dimethoxy-pyrimidine-anthranilic acid (1/1).

Kaliyaperumal Thanigaimani, Packianathan Thomas Muthiah, Daniel E Lynch.   

Abstract

In the title cocrystal, C(6)H(9)N(3)O(2)·C(7)H(7)NO(2), the asymmetric unit contains two crystallographically independent 2-amino-4,6-dimeth-oxy pyrimidine-anthranilic acid adducts. The 2-amino-4,6-dimeth-oxy pyrimidine mol-ecules inter-act with the carboxylic group of the respective anthranilic acid mol-ecules through N-H⋯O and O-H⋯N hydrogen bonds, forming a cyclic hydrogen-bonded motif R(2) (2)(8). The pyrimidine mol-ecules also form base pairs via a pair of N-H⋯N hydrogen bonds, forming another R(2) (2)(8) motif. The typical intra-molecular N-H⋯O hydrogen bond is observed in the anthranilic acid mol-ecules. Furthermore, the crystal structure is stabilized by C-H⋯O hydrogen bonds.

Entities:  

Year:  2007        PMID: 21200672      PMCID: PMC2915181          DOI: 10.1107/S1600536807063271

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Baker & Santi (1965 ▶); Balasub­ramani et al. (2005 ▶, 2006 ▶); Bernstein et al. (1995 ▶); Boone et al. (1977 ▶); Chinnakali et al. (1999 ▶); Desiraju (1989 ▶); Etter (1990 ▶); Hunt et al. (1980 ▶); Hunter (1994 ▶); Low et al. (2002 ▶); Lynch & Jones (2004 ▶); Muthiah et al. (2006 ▶); Schwalbe & Williams (1982 ▶); Stanley et al. (2005 ▶); Takazawa et al. (1986 ▶); Thanigaimani et al. (2006 ▶, 2007a ▶,b ▶).

Experimental

Crystal data

C6H9N3O2·C7H7NO2 M = 292.30 Triclinic, a = 7.2802 (3) Å b = 7.4095 (2) Å c = 25.8035 (9) Å α = 83.636 (2)° β = 83.1620 (10)° γ = 82.373 (2)° V = 1363.38 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 120 K 0.24 × 0.19 × 0.08 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: none 24443 measured reflections 6286 independent reflections 4140 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.134 S = 1.04 6286 reflections 390 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.31 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807063271/bt2644sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807063271/bt2644Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N3O2·C7H7NO2Z = 4
Mr = 292.30F000 = 616
Triclinic, P1Dx = 1.424 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.2802 (3) ÅCell parameters from 25 reflections
b = 7.4095 (2) Åθ = 3.0–27.6º
c = 25.8035 (9) ŵ = 0.11 mm1
α = 83.636 (2)ºT = 120 K
β = 83.1620 (10)ºPlate-like, colourless
γ = 82.373 (2)º0.24 × 0.19 × 0.08 mm
V = 1363.38 (8) Å3
Bruker–Nonius CCD diffractometer6286 independent reflections
Radiation source: Bruker-Nonius FR591 rotating anode4140 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.064
Detector resolution: 9.091 pixels mm-1θmax = 27.6º
T = 120 Kθmin = 3.0º
φ and ω scansh = −9→9
Absorption correction: nonek = −9→9
24443 measured reflectionsl = −33→33
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.050  w = 1/[σ2(Fo2) + (0.0585P)2 + 0.223P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.134(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.29 e Å3
6286 reflectionsΔρmin = −0.31 e Å3
390 parametersExtinction correction: shelxl, FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.022 (3)
Secondary atom site location: difference Fourier map
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1A1.21498 (19)0.13688 (17)0.11198 (5)0.0321 (4)
O2A0.9788 (2)0.62312 (17)0.21411 (5)0.0325 (4)
N1A0.9714 (2)0.65251 (19)0.12796 (6)0.0245 (5)
N2A0.9553 (2)0.6942 (2)0.03985 (6)0.0299 (5)
N3A1.0875 (2)0.41201 (19)0.07324 (6)0.0242 (5)
C2A1.0060 (2)0.5827 (2)0.08148 (7)0.0240 (6)
C4A1.1324 (2)0.3082 (2)0.11596 (7)0.0251 (6)
C5A1.0999 (3)0.3628 (2)0.16628 (7)0.0282 (6)
C6A1.0193 (3)0.5400 (2)0.16970 (7)0.0258 (6)
C7A1.2546 (3)0.0744 (3)0.06061 (8)0.0364 (7)
C8A1.0194 (3)0.5193 (3)0.26230 (7)0.0425 (8)
O1B1.23977 (18)0.52942 (18)0.36928 (5)0.0318 (4)
O2B0.76374 (17)0.84403 (18)0.47739 (5)0.0303 (4)
N1B1.0400 (2)0.7436 (2)0.50440 (6)0.0250 (5)
N2B1.3186 (2)0.6512 (2)0.53585 (6)0.0290 (5)
N3B1.2895 (2)0.5829 (2)0.45247 (5)0.0244 (5)
C2B1.2140 (3)0.6598 (2)0.49642 (7)0.0244 (6)
C4B1.1779 (3)0.5992 (2)0.41485 (7)0.0243 (6)
C5B0.9958 (3)0.6842 (2)0.41835 (7)0.0268 (6)
C6B0.9336 (3)0.7556 (2)0.46478 (7)0.0251 (6)
C7B1.4261 (3)0.4377 (3)0.36371 (8)0.0355 (7)
C8B0.6364 (3)0.8702 (3)0.43854 (7)0.0309 (6)
O3A0.79403 (19)0.97701 (17)0.15298 (5)0.0306 (4)
O4A0.7717 (2)1.03505 (17)0.06735 (5)0.0372 (4)
N4A0.6470 (2)1.3700 (3)0.02930 (6)0.0298 (5)
C9A0.6511 (2)1.2676 (2)0.12255 (7)0.0240 (5)
C10A0.6112 (2)1.4017 (2)0.08103 (7)0.0251 (6)
C11A0.5288 (3)1.5756 (3)0.09344 (7)0.0290 (6)
C12A0.4867 (3)1.6146 (3)0.14425 (7)0.0315 (6)
C13A0.5262 (3)1.4836 (3)0.18544 (8)0.0321 (6)
C14A0.6066 (3)1.3120 (3)0.17417 (7)0.0279 (6)
C15A0.7426 (3)1.0846 (2)0.11184 (7)0.0259 (6)
O3B1.10809 (18)0.82786 (17)0.63163 (5)0.0302 (4)
O4B0.85924 (18)0.8829 (2)0.58677 (5)0.0333 (5)
N4B1.0645 (2)0.9650 (2)0.72764 (6)0.0355 (6)
C9B0.8187 (3)0.9691 (2)0.67164 (7)0.0243 (5)
C10B0.8820 (3)0.9998 (2)0.71877 (7)0.0251 (6)
C11B0.7504 (3)1.0696 (3)0.75827 (7)0.0293 (6)
C12B0.5670 (3)1.1126 (3)0.75049 (8)0.0313 (6)
C13B0.5050 (3)1.0903 (3)0.70327 (8)0.0315 (6)
C14B0.6303 (3)1.0186 (3)0.66481 (7)0.0300 (6)
C15B0.9429 (3)0.8870 (2)0.62876 (7)0.0258 (6)
H2A10.903700.803800.043800.0360*
H2A20.974300.656300.009100.0360*
H7A11.31410−0.049400.063300.0550*
H7A21.335900.151200.039200.0550*
H7A31.140500.079800.045000.0550*
H5A1.130600.284900.195600.0340*
H8A10.983300.594300.290700.0640*
H8A21.150700.479000.260800.0640*
H8A30.951700.415000.267800.0640*
H5B0.921500.692000.391100.0320*
H2B11.273200.698100.564400.0350*
H2B21.431600.598800.532800.0350*
H8B10.520000.932800.452400.0460*
H8B20.616500.753500.428800.0460*
H8B30.687000.942000.408200.0460*
H7B11.452500.393600.329700.0530*
H7B21.438300.336400.390200.0530*
H7B31.512400.521500.367500.0530*
H3A0.848100.880000.143500.0460*
H70.722 (3)1.265 (3)0.0224 (9)0.057 (7)*
H11A0.502201.666200.066500.0350*
H12A0.430801.730800.151400.0380*
H13A0.498901.511400.220000.0390*
H14A0.632101.223000.201600.0330*
H160.653 (3)1.465 (3)0.0067 (9)0.046 (7)*
H4B0.932600.834000.564400.0500*
H11B0.789001.086600.790300.0350*
H12B0.482401.157600.777300.0380*
H13B0.380601.123300.697800.0380*
H14B0.588901.002300.633100.0360*
H4B11.146400.922300.703800.0430*
H4B21.097900.985600.757100.0430*
U11U22U33U12U13U23
O1A0.0400 (8)0.0249 (7)0.0303 (7)0.0042 (6)−0.0089 (6)−0.0023 (6)
O2A0.0483 (9)0.0293 (7)0.0203 (7)−0.0006 (6)−0.0080 (6)−0.0041 (5)
N1A0.0279 (8)0.0238 (8)0.0213 (8)−0.0010 (6)−0.0036 (6)−0.0018 (6)
N2A0.0427 (10)0.0238 (8)0.0205 (8)0.0073 (7)−0.0042 (7)−0.0035 (6)
N3A0.0249 (8)0.0212 (8)0.0255 (8)0.0018 (6)−0.0041 (6)−0.0016 (6)
C2A0.0226 (10)0.0262 (10)0.0230 (9)−0.0018 (8)−0.0023 (7)−0.0027 (7)
C4A0.0241 (10)0.0220 (9)0.0292 (10)−0.0020 (8)−0.0055 (8)−0.0005 (8)
C5A0.0337 (11)0.0274 (10)0.0234 (10)−0.0018 (8)−0.0092 (8)0.0024 (8)
C6A0.0273 (10)0.0277 (10)0.0238 (10)−0.0052 (8)−0.0055 (8)−0.0037 (8)
C7A0.0461 (13)0.0269 (10)0.0337 (11)0.0092 (9)−0.0060 (9)−0.0063 (8)
C8A0.0650 (16)0.0404 (13)0.0218 (10)−0.0009 (11)−0.0123 (10)0.0003 (9)
O1B0.0296 (7)0.0409 (8)0.0255 (7)0.0022 (6)−0.0056 (6)−0.0106 (6)
O2B0.0225 (7)0.0416 (8)0.0264 (7)0.0017 (6)−0.0062 (5)−0.0037 (6)
N1B0.0224 (8)0.0311 (9)0.0214 (8)−0.0019 (7)−0.0042 (6)−0.0022 (6)
N2B0.0230 (8)0.0428 (10)0.0212 (8)0.0038 (7)−0.0053 (6)−0.0088 (7)
N3B0.0252 (8)0.0281 (8)0.0202 (8)−0.0037 (6)−0.0026 (6)−0.0028 (6)
C2B0.0236 (10)0.0272 (10)0.0224 (9)−0.0053 (8)−0.0017 (7)−0.0008 (7)
C4B0.0282 (10)0.0265 (10)0.0194 (9)−0.0078 (8)−0.0020 (7)−0.0030 (7)
C5B0.0256 (10)0.0333 (11)0.0226 (9)−0.0037 (8)−0.0062 (7)−0.0037 (8)
C6B0.0228 (10)0.0278 (10)0.0243 (10)−0.0032 (8)−0.0036 (7)0.0011 (8)
C7B0.0308 (11)0.0460 (12)0.0298 (11)0.0033 (9)−0.0038 (8)−0.0136 (9)
C8B0.0242 (10)0.0394 (11)0.0296 (10)−0.0029 (9)−0.0080 (8)−0.0007 (8)
O3A0.0376 (8)0.0260 (7)0.0255 (7)0.0048 (6)−0.0033 (6)−0.0013 (5)
O4A0.0541 (9)0.0290 (7)0.0252 (7)0.0094 (7)−0.0050 (6)−0.0049 (6)
N4A0.0387 (10)0.0255 (9)0.0225 (9)0.0059 (8)−0.0037 (7)−0.0023 (7)
C9A0.0210 (9)0.0260 (9)0.0248 (9)−0.0010 (8)−0.0025 (7)−0.0040 (7)
C10A0.0217 (10)0.0297 (10)0.0241 (10)0.0003 (8)−0.0034 (7)−0.0064 (8)
C11A0.0292 (11)0.0270 (10)0.0299 (10)0.0039 (8)−0.0072 (8)−0.0029 (8)
C12A0.0324 (11)0.0279 (10)0.0336 (11)0.0043 (8)−0.0047 (9)−0.0085 (8)
C13A0.0332 (11)0.0363 (11)0.0263 (10)0.0013 (9)−0.0014 (8)−0.0092 (8)
C14A0.0266 (10)0.0301 (10)0.0260 (10)−0.0017 (8)−0.0016 (8)−0.0016 (8)
C15A0.0254 (10)0.0278 (10)0.0240 (10)−0.0017 (8)−0.0029 (8)−0.0019 (8)
O3B0.0248 (7)0.0375 (8)0.0274 (7)−0.0005 (6)−0.0022 (5)−0.0034 (6)
O4B0.0282 (8)0.0494 (9)0.0217 (7)0.0018 (6)−0.0026 (6)−0.0090 (6)
N4B0.0276 (9)0.0528 (11)0.0283 (9)−0.0019 (8)−0.0064 (7)−0.0134 (8)
C9B0.0260 (10)0.0242 (9)0.0216 (9)−0.0034 (8)−0.0003 (7)0.0004 (7)
C10B0.0257 (10)0.0244 (9)0.0251 (10)−0.0044 (8)−0.0022 (8)−0.0006 (7)
C11B0.0323 (11)0.0319 (10)0.0241 (10)−0.0029 (8)−0.0014 (8)−0.0069 (8)
C12B0.0318 (11)0.0295 (10)0.0316 (11)−0.0041 (9)0.0054 (8)−0.0070 (8)
C13B0.0241 (10)0.0343 (11)0.0355 (11)−0.0009 (8)−0.0003 (8)−0.0066 (9)
C14B0.0267 (10)0.0347 (11)0.0287 (10)−0.0010 (8)−0.0045 (8)−0.0049 (8)
C15B0.0257 (10)0.0293 (10)0.0218 (9)−0.0038 (8)−0.0021 (8)0.0002 (7)
O1A—C4A1.340 (2)C7A—H7A20.9598
O1A—C7A1.437 (2)C7A—H7A10.9599
O2A—C6A1.344 (2)C7A—H7A30.9598
O2A—C8A1.428 (2)C8A—H8A20.9604
O1B—C4B1.342 (2)C8A—H8A10.9595
O1B—C7B1.433 (3)C8A—H8A30.9594
O2B—C6B1.342 (2)C4B—C5B1.387 (3)
O2B—C8B1.426 (2)C5B—C6B1.367 (2)
O3A—C15A1.315 (2)C5B—H5B0.9293
O4A—C15A1.230 (2)C7B—H7B10.9595
O3A—H3A0.8200C7B—H7B30.9599
O3B—C15B1.232 (3)C7B—H7B20.9600
O4B—C15B1.310 (2)C8B—H8B30.9605
O4B—H4B0.8193C8B—H8B20.9602
N1A—C2A1.342 (2)C8B—H8B10.9599
N1A—C6A1.338 (2)C9A—C15A1.469 (2)
N2A—C2A1.338 (2)C9A—C10A1.407 (2)
N3A—C4A1.321 (2)C9A—C14A1.398 (3)
N3A—C2A1.352 (2)C10A—C11A1.401 (3)
N2A—H2A20.8605C11A—C12A1.364 (3)
N2A—H2A10.8598C12A—C13A1.387 (3)
N1B—C6B1.343 (2)C13A—C14A1.374 (3)
N1B—C2B1.338 (3)C11A—H11A0.9303
N2B—C2B1.333 (2)C12A—H12A0.9302
N3B—C4B1.324 (2)C13A—H13A0.9300
N3B—C2B1.351 (2)C14A—H14A0.9304
N2B—H2B10.8608C9B—C15B1.475 (3)
N2B—H2B20.8604C9B—C10B1.402 (3)
N4A—C10A1.369 (2)C9B—C14B1.399 (3)
N4A—H70.91 (2)C10B—C11B1.406 (3)
N4A—H160.87 (2)C11B—C12B1.364 (3)
N4B—C10B1.361 (3)C12B—C13B1.382 (3)
N4B—H4B20.8602C13B—C14B1.368 (3)
N4B—H4B10.8601C11B—H11B0.9304
C4A—C5A1.387 (2)C12B—H12B0.9297
C5A—C6A1.373 (2)C13B—H13B0.9295
C5A—H5A0.9299C14B—H14B0.9302
O1B···C8A3.366 (2)C7B···H2B2viii2.9499
O2A···O3A3.1345 (18)C8A···H5A2.5674
O2A···C11Bi3.386 (3)C8B···H5B2.5643
O2B···O4B3.0386 (18)C8B···H14Biii2.6313
O3A···O2A3.1345 (18)C10B···H5Aii2.8828
O3A···N1A2.6808 (19)C11A···H7A1xv3.0702
O3B···C8Bi3.339 (2)C11B···H5Aii2.8311
O3B···N4B2.749 (2)C11B···H12Axiii2.9790
O3B···N2B3.075 (2)C12A···H12Bxiii2.8221
O4A···N4A2.650 (2)C12B···H13Axiii2.9326
O4A···N2A2.818 (2)C12B···H12Axiii2.9020
O4B···C7Bii3.405 (3)C13A···H12Bxiii2.9162
O4B···O2B3.0386 (18)C13B···H4B1xiv3.0357
O4B···C6Bi3.320 (2)C15A···H2A12.9083
O4B···C6B3.348 (2)C15A···H72.55 (2)
O4B···N1B2.603 (2)C15B···H4B12.6288
O1A···H11Bii2.8584C15B···H2B13.0282
O1B···H8A12.8768H2A1···C7Avi3.0537
O2A···H3A2.6478H2A1···C15A2.9083
O2A···H11Bi2.8917H2A1···H7A3vi2.4003
O2B···H4B2.6746H2A1···O4A1.9706
O3A···H4B2i2.5912H2A2···H7A3vi2.3895
O3A···H12Biii2.7485H2A2···H2A2vi2.3863
O3A···H14A2.4228H2A2···C7Avi3.0049
O3B···H8B3i2.4721H2A2···H7vii2.3871
O3B···H2B12.2238H2A2···N4Avii2.8055
O3B···H4B12.1213H2A2···N3Avi2.3451
O4A···H71.97 (2)H2A2···C2Avi3.0643
O4A···H7A3iv2.7343H7A1···C11Axvi3.0702
O4A···H2A11.9706H7A1···H11Axvi2.3548
O4B···H7B2ii2.8459H3A···C6A2.7105
O4B···H14B2.3016H3A···C2A2.8994
N1A···C15A3.413 (2)H3A···N1A1.8629
N1A···O3A2.6808 (19)H3A···O2A2.6478
N1B···O4B2.603 (2)H7A2···N3A2.6166
N2A···C11Av3.429 (3)H7A2···N4Axii2.9272
N2A···O4A2.818 (2)H4B···C2B2.8079
N2A···N3Avi3.166 (2)H4B···N1B1.8054
N2A···N4Avii3.223 (2)H4B···C6B2.6964
N2A···C7Avi3.355 (3)H4B···O2B2.6746
N2B···O3B3.075 (2)H4B···H2B12.5495
N2B···C7Bviii3.324 (3)H7A3···H2A2vi2.3895
N2B···N3Bviii3.165 (2)H7A3···H2A1vi2.4003
N3A···N2Avi3.166 (2)H7A3···O4Av2.7343
N3B···N2Bviii3.165 (2)H7A3···N2Avi2.7065
N4A···N4Aix3.100 (3)H7A3···N3A2.6110
N4A···O4A2.650 (2)H5A···C11Bii2.8311
N4A···N2Avii3.223 (2)H5A···H8A22.3603
N4B···C13Bx3.424 (3)H5A···C10Bii2.8828
N4B···O3B2.749 (2)H5A···N4Bii2.9299
N1A···H3A1.8629H5A···C8A2.5674
N1B···H4B1.8054H5A···H8A32.3629
N2A···H7vii2.72 (2)H5B···H8B32.3881
N2A···H7A3vi2.7065H5B···C8B2.5643
N2B···H7B2viii2.7691H5B···H8B22.3237
N3A···H16vii2.79 (2)H8A1···O1B2.8768
N3A···H7A32.6110H7···H2A2vii2.3871
N3A···H2A2vi2.3450H7···O4A1.97 (2)
N3A···H7A22.6166H7···N2Avii2.72 (2)
N3B···H8B2x2.8142H7···C15A2.55 (2)
N3B···H7B32.6125H8A2···C5A2.7552
N3B···H7B22.6081H8A2···H5A2.3603
N3B···H2B2viii2.3290H8A3···H5A2.3629
N4A···H7A2xi2.9272H8A3···N4Bii2.8226
N4A···H16ix2.58 (2)H8A3···C5A2.7598
N4A···H11Aix2.8681H2B1···H4B2.5495
N4A···H2A2vii2.8055H2B1···C7Bviii3.0355
N4B···H5Aii2.9299H2B1···H7B2viii2.4952
N4B···H8A3ii2.8226H2B1···C15B3.0282
N4B···H13Bx2.7127H2B1···O3B2.2238
C2A···C10Av3.331 (2)H2B2···N3Bviii2.3290
C2A···C11Av3.458 (3)H2B2···C2Bviii3.0727
C2B···C5Bii3.558 (2)H2B2···C7Bviii2.9499
C2B···C6Bii3.401 (2)H2B2···H2B2viii2.4004
C4A···C9Av3.539 (2)H2B2···H7B2viii2.4198
C4A···C15Av3.488 (3)H8B1···H14Biii2.4098
C5A···C12Axii3.537 (3)H11A···H162.3411
C5A···C13Axii3.447 (3)H11A···H7A1xv2.3548
C5B···C15Bi3.341 (2)H11A···N4Aix2.8681
C5B···C2Bii3.558 (2)H11B···H4B22.3639
C5B···C9Bi3.559 (2)H11B···H12Axiii2.4408
C6A···C12Axii3.493 (3)H11B···O1Aii2.8584
C6B···O4B3.348 (2)H11B···O2Ai2.8917
C6B···O4Bi3.320 (2)H8B2···H5B2.3237
C6B···C2Bii3.401 (2)H8B2···N3Bxiv2.8142
C6B···C15Bi3.514 (2)H8B2···C5B2.7274
C7A···N2Avi3.355 (3)H12A···C12Bxiii2.9019
C7B···O4Bii3.405 (3)H12A···C11Bxiii2.9790
C7B···N2Bviii3.324 (3)H12A···H11Bxiii2.4408
C8A···O1B3.366 (2)H12A···H12Bxiii2.2849
C8B···O3Bi3.339 (2)H12B···O3Aiii2.7485
C8B···C14Biii3.447 (3)H12B···C12Axiii2.8220
C9A···C4Aiv3.539 (2)H12B···C13Axiii2.9162
C9B···C5Bi3.559 (2)H12B···H12Axiii2.2849
C10A···C2Aiv3.331 (2)H12B···H13Axiii2.4834
C11A···N2Aiv3.429 (3)H8B3···H5B2.3881
C11A···C2Aiv3.458 (3)H8B3···O3Bi2.4721
C11B···O2Ai3.386 (3)H8B3···C5B2.7678
C12A···C5Axi3.537 (3)H8B3···H14Biii2.3522
C12A···C6Axi3.493 (3)H13A···H12Bxiii2.4834
C12A···C12Bxiii3.517 (3)H13A···C12Bxiii2.9326
C12B···C13Axiii3.526 (3)H13B···N4Bxiv2.7127
C12B···C12Axiii3.517 (3)H13B···H4B1xiv2.3894
C13A···C5Axi3.447 (3)H14A···H4B2i2.5915
C13A···C12Bxiii3.526 (3)H14A···O3A2.4228
C13B···N4Bxiv3.424 (3)H14B···C8Biii2.6313
C14B···C8Biii3.447 (3)H14B···O4B2.3016
C15A···N1A3.413 (2)H14B···H8B1iii2.4098
C15A···C4Aiv3.488 (3)H14B···H8B3iii2.3522
C15B···C5Bi3.341 (2)H7B2···N2Bviii2.7691
C15B···C6Bi3.514 (2)H7B2···O4Bii2.8459
C2A···H3A2.8994H7B2···H2B1viii2.4952
C2A···H2A2vi3.0643H7B2···H2B2viii2.4198
C2B···H2B2viii3.0727H7B2···N3B2.6081
C2B···H4B2.8079H16···H16ix2.28 (3)
C5A···H8A32.7598H16···H11A2.3411
C5A···H8A22.7552H16···N4Aix2.58 (2)
C5B···H8B32.7678H16···N3Avii2.79 (2)
C5B···H8B22.7274H7B3···N3B2.6125
C6A···H3A2.7105H4B1···O3B2.1213
C6B···H4B2.6964H4B1···C13Bx3.0357
C7A···H2A2vi3.0049H4B1···C15B2.6288
C7A···H2A1vi3.0537H4B1···H13Bx2.3894
C7B···H2B1viii3.0355H4B2···H11B2.3639
C4A—O1A—C7A118.05 (15)C4B—C5B—H5B122.42
C6A—O2A—C8A118.02 (14)C6B—C5B—H5B122.43
C4B—O1B—C7B117.81 (15)O1B—C7B—H7B2109.47
C6B—O2B—C8B117.41 (15)O1B—C7B—H7B3109.50
C15A—O3A—H3A109.45O1B—C7B—H7B1109.50
C15B—O4B—H4B109.42H7B2—C7B—H7B3109.50
C2A—N1A—C6A116.21 (14)H7B1—C7B—H7B2109.40
C2A—N3A—C4A114.84 (15)H7B1—C7B—H7B3109.45
C2A—N2A—H2A1120.01H8B1—C8B—H8B2109.51
C2A—N2A—H2A2120.03O2B—C8B—H8B3109.49
H2A1—N2A—H2A2119.95O2B—C8B—H8B2109.50
C2B—N1B—C6B116.94 (16)O2B—C8B—H8B1109.46
C2B—N3B—C4B114.73 (16)H8B1—C8B—H8B3109.45
H2B1—N2B—H2B2119.91H8B2—C8B—H8B3109.41
C2B—N2B—H2B1120.04C10A—C9A—C15A120.50 (15)
C2B—N2B—H2B2120.05C14A—C9A—C15A120.32 (16)
H7—N4A—H16118 (2)C10A—C9A—C14A119.16 (15)
C10A—N4A—H7116.0 (15)N4A—C10A—C11A118.55 (16)
C10A—N4A—H16116.8 (15)C9A—C10A—C11A118.15 (16)
C10B—N4B—H4B1120.00N4A—C10A—C9A123.30 (15)
C10B—N4B—H4B2120.00C10A—C11A—C12A121.29 (19)
H4B1—N4B—H4B2120.01C11A—C12A—C13A121.0 (2)
N1A—C2A—N2A116.23 (14)C12A—C13A—C14A118.69 (19)
N1A—C2A—N3A125.95 (16)C9A—C14A—C13A121.71 (18)
N2A—C2A—N3A117.82 (16)O4A—C15A—C9A122.52 (16)
N3A—C4A—C5A124.69 (14)O3A—C15A—C9A115.63 (15)
O1A—C4A—N3A119.51 (15)O3A—C15A—O4A121.84 (15)
O1A—C4A—C5A115.79 (15)C10A—C11A—H11A119.34
C4A—C5A—C6A115.23 (16)C12A—C11A—H11A119.36
O2A—C6A—C5A125.55 (16)C13A—C12A—H12A119.48
O2A—C6A—N1A111.41 (14)C11A—C12A—H12A119.53
N1A—C6A—C5A123.04 (16)C12A—C13A—H13A120.66
C6A—C5A—H5A122.42C14A—C13A—H13A120.65
C4A—C5A—H5A122.35C9A—C14A—H14A119.12
O1A—C7A—H7A2109.37C13A—C14A—H14A119.18
H7A1—C7A—H7A3109.49C14B—C9B—C15B118.51 (17)
O1A—C7A—H7A3109.51C10B—C9B—C14B118.82 (17)
H7A1—C7A—H7A2109.42C10B—C9B—C15B122.68 (19)
O1A—C7A—H7A1109.53N4B—C10B—C11B119.07 (17)
H7A2—C7A—H7A3109.50C9B—C10B—C11B118.18 (19)
H8A2—C8A—H8A3109.48N4B—C10B—C9B122.75 (17)
H8A1—C8A—H8A3109.47C10B—C11B—C12B121.16 (18)
O2A—C8A—H8A3109.55C11B—C12B—C13B121.0 (2)
H8A1—C8A—H8A2109.44C12B—C13B—C14B118.7 (2)
O2A—C8A—H8A2109.46C9B—C14B—C13B122.10 (18)
O2A—C8A—H8A1109.42O3B—C15B—C9B124.16 (17)
N2B—C2B—N3B118.31 (18)O4B—C15B—C9B112.92 (18)
N1B—C2B—N2B116.21 (16)O3B—C15B—O4B122.92 (16)
N1B—C2B—N3B125.48 (17)C10B—C11B—H11B119.44
N3B—C4B—C5B125.03 (16)C12B—C11B—H11B119.40
O1B—C4B—N3B119.61 (17)C11B—C12B—H12B119.59
O1B—C4B—C5B115.36 (17)C13B—C12B—H12B119.46
C4B—C5B—C6B115.15 (18)C12B—C13B—H13B120.60
O2B—C6B—N1B111.18 (15)C14B—C13B—H13B120.71
O2B—C6B—C5B126.17 (18)C9B—C14B—H14B118.94
N1B—C6B—C5B122.65 (19)C13B—C14B—H14B118.95
C7A—O1A—C4A—N3A1.2 (2)C4B—C5B—C6B—O2B179.87 (16)
C7A—O1A—C4A—C5A−179.01 (17)C14A—C9A—C15A—O4A174.43 (19)
C8A—O2A—C6A—N1A179.08 (17)C15A—C9A—C10A—N4A2.6 (2)
C8A—O2A—C6A—C5A−1.1 (3)C15A—C9A—C10A—C11A−178.15 (17)
C7B—O1B—C4B—N3B0.6 (2)C14A—C9A—C10A—N4A−178.92 (17)
C7B—O1B—C4B—C5B−179.14 (16)C14A—C9A—C10A—C11A0.3 (2)
C8B—O2B—C6B—C5B−1.5 (3)C10A—C9A—C14A—C13A−0.5 (3)
C8B—O2B—C6B—N1B178.82 (15)C15A—C9A—C14A—C13A177.98 (19)
C2A—N1A—C6A—O2A−179.97 (17)C10A—C9A—C15A—O4A−7.1 (3)
C6A—N1A—C2A—N3A−1.4 (2)C14A—C9A—C15A—O3A−6.4 (3)
C6A—N1A—C2A—N2A178.93 (16)C10A—C9A—C15A—O3A172.05 (16)
C2A—N1A—C6A—C5A0.2 (3)C9A—C10A—C11A—C12A−0.5 (3)
C4A—N3A—C2A—N1A1.1 (2)N4A—C10A—C11A—C12A178.82 (19)
C4A—N3A—C2A—N2A−179.32 (14)C10A—C11A—C12A—C13A0.8 (3)
C2A—N3A—C4A—O1A−179.60 (14)C11A—C12A—C13A—C14A−0.9 (3)
C2A—N3A—C4A—C5A0.6 (2)C12A—C13A—C14A—C9A0.8 (3)
C6B—N1B—C2B—N3B−1.7 (3)C10B—C9B—C15B—O3B4.9 (3)
C2B—N1B—C6B—C5B1.0 (2)C10B—C9B—C15B—O4B−175.17 (15)
C2B—N1B—C6B—O2B−179.28 (14)C14B—C9B—C15B—O3B−175.29 (17)
C6B—N1B—C2B—N2B179.12 (15)C14B—C9B—C15B—O4B4.7 (2)
C4B—N3B—C2B—N2B−179.14 (15)C15B—C9B—C10B—N4B3.4 (2)
C4B—N3B—C2B—N1B1.7 (2)C15B—C9B—C10B—C11B−176.60 (16)
C2B—N3B—C4B—C5B−1.0 (2)C10B—C9B—C14B—C13B−2.2 (3)
C2B—N3B—C4B—O1B179.26 (15)C15B—C9B—C14B—C13B177.97 (18)
O1A—C4A—C5A—C6A178.51 (17)C14B—C9B—C10B—N4B−176.38 (17)
N3A—C4A—C5A—C6A−1.7 (3)C14B—C9B—C10B—C11B3.6 (2)
C4A—C5A—C6A—N1A1.3 (3)N4B—C10B—C11B—C12B177.68 (18)
C4A—C5A—C6A—O2A−178.56 (18)C9B—C10B—C11B—C12B−2.3 (3)
N3B—C4B—C5B—C6B0.5 (3)C10B—C11B—C12B—C13B−0.6 (3)
O1B—C4B—C5B—C6B−179.79 (15)C11B—C12B—C13B—C14B2.0 (3)
C4B—C5B—C6B—N1B−0.4 (2)C12B—C13B—C14B—C9B−0.6 (3)
D—H···AD—HH···AD···AD—H···A
N2A—H2A1···O4A0.861.972.818 (2)169
N2A—H2A2···N3Avi0.862.353.166 (2)160
O3A—H3A···N1A0.821.862.6808 (19)175
O4B—H4B···N1B0.821.812.603 (2)164
N4A—H7···O4A0.91 (2)1.97 (2)2.650 (2)130 (2)
N2B—H2B1···O3B0.862.223.075 (2)170
N2B—H2B2···N3Bviii0.862.333.165 (2)164
N4A—H16···N4Aix0.87 (2)2.58 (2)3.100 (3)119.7 (18)
N4B—H4B1···O3B0.862.122.749 (2)129
N4B—H4B2···O3Ai0.862.593.450 (2)176
C8B—H8B3···O3Bi0.962.473.339 (2)150
C14A—H14A···O3A0.932.422.747 (3)100
C14B—H14B···O4B0.932.302.655 (2)102
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2A—H2A1⋯O4A0.861.972.818 (2)169
N2A—H2A2⋯N3Ai0.862.353.166 (2)160
O3A—H3A⋯N1A0.821.862.6808 (19)175
O4B—H4B⋯N1B0.821.812.603 (2)164
N4A—H7⋯O4A0.91 (2)1.97 (2)2.650 (2)130 (2)
N2B—H2B1⋯O3B0.862.223.075 (2)170
N2B—H2B2⋯N3Bii0.862.333.165 (2)164
N4A—H16⋯N4Aiii0.87 (2)2.58 (2)3.100 (3)119.7 (18)
N4B—H4B1⋯O3B0.862.122.749 (2)129
N4B—H4B2⋯O3Aiv0.862.593.450 (2)176
C8B—H8B3⋯O3Biv0.962.473.339 (2)150
C14A—H14A⋯O3A0.932.422.747 (3)100
C14B—H14B⋯O4B0.932.302.655 (2)102

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  Hydrogen bonding in 2-amino-4,6-dimethoxypyrimidine, 2-benzylamino-4,6-bis(benzyloxy)pyrimidine and 2-amino-4,6-bis(N-pyrrolidino)pyrimidine: chains of fused rings and a centrosymmetric dimer.

Authors:  John N Low; Antonio Quesada; Antonio Marchal; Manuel Melguizo; Manuel Nogueras; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2002-04-30       Impact factor: 1.172

2.  Geometry of the 2-aminoheterocyclic-carboxylic acid R2(2)(8) graph set: implications for crystal engineering.

Authors:  Daniel E Lynch; Glyn D Jones
Journal:  Acta Crystallogr B       Date:  2004-11-11

3.  Hydrogen-bonding and pi-pi interactions in 2-amino-4,6-dimethylpyrimidinium salicylate.

Authors:  Packianathan Thomas Muthiah; Kasthuri Balasubramani; Urszula Rychlewska; Agnieszka Plutecka
Journal:  Acta Crystallogr C       Date:  2006-09-12       Impact factor: 1.172

4.  Hydrogen-bonded supramolecular motifs in 2-amino-4,6-dimethoxypyrimidinium 4-hydroxybenzoate monohydrate, 2-amino-4,6-dimethoxypyrimidinium 6-carboxypyridine-2-carboxylate monohydrate and 2-amino-4,6-dimethoxypyrimidinium hydrogen (2R,3R)-tartrate 2-amino-4,6-dimethoxypyrimidine.

Authors:  Kaliyaperumal Thanigaimani; Packianathan Thomas Muthiah; Daniel E Lynch
Journal:  Acta Crystallogr C       Date:  2007-04-21       Impact factor: 1.172

5.  Analogs of tetrahydrofolic acid XXIV. Further observations on the mode of pyrimidyl binding to dihydrofolic reductase and thymidylate synthetase by the 2-amino-5-(3-anilinopropyl)-6-methyl-4-pyrimidinol type of inhibitor.

Authors:  B R Baker; D V Santi
Journal:  J Pharm Sci       Date:  1965-09       Impact factor: 3.534

6.  Crystallographic and molecular-orbital studies on the geometry of antifolate drugs.

Authors:  W E Hunt; C H Schwalbe; K Bird; P D Mallinson
Journal:  Biochem J       Date:  1980-05-01       Impact factor: 3.857

  6 in total
  2 in total

1.  4,6-Dimeth-oxy-pyrimidin-2-amine-2-(1H-indol-3-yl)acetic acid (1/1).

Authors:  Samuel Ebenezer; Packianathan Thomas Muthiah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

2.  2-Amino-4,6-dimeth-oxy-pyrimidin-1-ium p-toluene-sulfonate.

Authors:  Sundaramoorthy Gomathi; Packianathan Thomas Muthiah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.