Literature DB >> 22058986

(E)-2-{[1-Carb-oxy-2-(1H-indol-3-yl)ethyl-iminio]meth-yl}-6-hy-droxy-phenolate.

Salah Ahmed Ba-Salamah, Naser Eltaher Eltayeb, Siang Guan Teoh, Kong Mun Lo.   

Abstract

In the zwitterionic title compound, C(18)H(16)N(2)O(4), the dihedral angle between the planes of the benzene and indole rings is 26.38 (10)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked through N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds into infinite chains propagating in [010].

Entities:  

Year:  2011        PMID: 22058986      PMCID: PMC3200592          DOI: 10.1107/S1600536811031709

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to Schiff bases, see: Ba-Salamah et al. (2011 ▶). For other related structures, see: Eltayeb et al. (2010a ▶,b ▶,c ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For graph-set theory, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C18H16N2O4 M = 324.33 Monoclinic, a = 8.4351 (2) Å b = 9.3038 (3) Å c = 9.5023 (3) Å β = 98.683 (2)° V = 737.18 (4) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.32 × 0.22 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.598, T max = 0.746 7473 measured reflections 1949 independent reflections 1781 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.093 S = 1.14 1949 reflections 233 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811031709/hb6347sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031709/hb6347Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16N2O4F(000) = 340
Mr = 324.33Dx = 1.461 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1920 reflections
a = 8.4351 (2) Åθ = 3.0–27.7°
b = 9.3038 (3) ŵ = 0.11 mm1
c = 9.5023 (3) ÅT = 100 K
β = 98.683 (2)°Block, orange
V = 737.18 (4) Å30.32 × 0.22 × 0.20 mm
Z = 2
Bruker SMART APEXII CCD diffractometer1949 independent reflections
Radiation source: fine-focus sealed tube1781 reflections with I > 2σ(I)
graphiteRint = 0.046
φ and ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.598, Tmax = 0.746k = −12→12
7473 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0454P)2 + 0.0637P] where P = (Fo2 + 2Fc2)/3
1949 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.27 e Å3
1 restraintΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.07419 (19)−0.1334 (2)0.34014 (17)0.0232 (4)
O2−0.0062 (2)−0.1221 (2)0.12218 (17)0.0211 (4)
O30.21206 (18)0.18228 (18)−0.05777 (17)0.0182 (3)
O40.3782 (2)0.2819 (2)−0.27523 (17)0.0208 (4)
N10.2349 (2)0.0546 (2)0.1933 (2)0.0153 (4)
N2−0.1227 (2)0.4135 (2)0.2298 (2)0.0195 (4)
C10.4611 (3)0.1047 (2)0.0751 (2)0.0155 (4)
C20.3695 (3)0.1726 (2)−0.0437 (2)0.0170 (5)
C30.4555 (3)0.2223 (3)−0.1530 (2)0.0171 (5)
C40.6201 (3)0.2052 (3)−0.1389 (3)0.0197 (5)
H40.67480.2395−0.21260.024*
C50.7084 (3)0.1396 (3)−0.0203 (3)0.0201 (5)
H50.82160.1306−0.01290.024*
C60.6296 (3)0.0881 (3)0.0856 (3)0.0189 (5)
H60.68810.04130.16590.023*
C70.3873 (3)0.0479 (3)0.1886 (2)0.0159 (4)
H70.45390.00240.26530.019*
C80.1609 (3)−0.0021 (3)0.3116 (2)0.0155 (4)
H80.2412−0.06730.36750.019*
C90.0139 (3)−0.0931 (3)0.2577 (2)0.0163 (5)
C100.1237 (3)0.1170 (3)0.4127 (2)0.0170 (4)
H10A0.08510.07220.49570.020*
H10B0.22450.16860.44820.020*
C110.0013 (3)0.2246 (3)0.3481 (2)0.0172 (5)
C12−0.1594 (3)0.2345 (3)0.3819 (2)0.0158 (4)
C13−0.2460 (3)0.1543 (3)0.4697 (2)0.0182 (5)
H13−0.19910.07320.52080.022*
C14−0.4016 (3)0.1962 (3)0.4803 (3)0.0200 (5)
H14−0.46190.14270.53890.024*
C15−0.4712 (3)0.3162 (3)0.4059 (3)0.0227 (5)
H15−0.57720.34370.41670.027*
C16−0.3889 (3)0.3954 (3)0.3172 (3)0.0205 (5)
H16−0.43730.47540.26540.025*
C17−0.2323 (3)0.3536 (3)0.3065 (2)0.0176 (5)
C180.0167 (3)0.3350 (3)0.2562 (2)0.0189 (5)
H180.11090.35480.21600.023*
H1N10.171 (3)0.093 (4)0.108 (3)0.034 (8)*
H1N2−0.141 (3)0.490 (4)0.171 (3)0.024 (7)*
H1O2−0.084 (4)−0.187 (4)0.102 (3)0.033 (8)*
H1O40.273 (4)0.292 (4)−0.278 (3)0.046 (10)*
U11U22U33U12U13U23
O10.0195 (8)0.0321 (10)0.0189 (8)−0.0065 (7)0.0056 (6)0.0020 (8)
O20.0196 (8)0.0255 (10)0.0191 (8)−0.0075 (7)0.0058 (6)−0.0043 (7)
O30.0124 (7)0.0216 (8)0.0210 (8)0.0019 (6)0.0043 (6)0.0020 (7)
O40.0162 (8)0.0266 (9)0.0208 (8)0.0010 (7)0.0069 (7)0.0035 (7)
N10.0142 (9)0.0166 (9)0.0157 (9)0.0013 (7)0.0039 (7)0.0001 (8)
N20.0194 (10)0.0179 (10)0.0228 (10)0.0010 (8)0.0087 (8)0.0028 (9)
C10.0137 (10)0.0168 (11)0.0166 (10)−0.0014 (8)0.0039 (8)−0.0031 (9)
C20.0143 (10)0.0162 (11)0.0208 (11)0.0007 (8)0.0041 (8)−0.0019 (9)
C30.0169 (10)0.0152 (11)0.0197 (11)−0.0008 (9)0.0047 (8)−0.0017 (9)
C40.0170 (11)0.0221 (13)0.0218 (11)−0.0026 (9)0.0086 (9)−0.0004 (10)
C50.0121 (10)0.0234 (12)0.0250 (11)−0.0021 (9)0.0037 (9)−0.0021 (10)
C60.0146 (10)0.0225 (12)0.0191 (11)−0.0006 (9)0.0012 (8)0.0003 (10)
C70.0159 (10)0.0144 (10)0.0169 (10)−0.0006 (8)0.0006 (8)−0.0024 (9)
C80.0136 (10)0.0182 (11)0.0149 (10)0.0002 (9)0.0028 (8)0.0010 (9)
C90.0122 (10)0.0162 (11)0.0203 (11)0.0004 (8)0.0022 (8)0.0021 (9)
C100.0150 (10)0.0200 (12)0.0165 (10)0.0012 (9)0.0040 (8)−0.0001 (9)
C110.0166 (10)0.0182 (11)0.0170 (10)−0.0010 (9)0.0032 (8)−0.0026 (9)
C120.0150 (10)0.0177 (11)0.0152 (10)−0.0004 (9)0.0043 (8)−0.0036 (9)
C130.0195 (11)0.0182 (12)0.0171 (10)0.0007 (9)0.0038 (8)−0.0011 (9)
C140.0181 (11)0.0202 (12)0.0230 (11)−0.0031 (9)0.0080 (9)−0.0011 (10)
C150.0166 (11)0.0228 (13)0.0300 (13)−0.0003 (9)0.0074 (9)−0.0049 (11)
C160.0188 (11)0.0161 (11)0.0272 (12)0.0033 (8)0.0054 (9)−0.0002 (10)
C170.0182 (11)0.0168 (11)0.0189 (11)−0.0017 (9)0.0065 (8)−0.0021 (9)
C180.0166 (11)0.0207 (12)0.0200 (11)−0.0007 (9)0.0048 (9)−0.0036 (10)
O1—C91.218 (3)C6—H60.9500
O2—C91.301 (3)C7—H70.9500
O2—H1O20.89 (3)C8—C91.525 (3)
O3—C21.318 (3)C8—C101.530 (3)
O4—C31.361 (3)C8—H81.0000
O4—H1O40.89 (3)C10—C111.501 (3)
N1—C71.295 (3)C10—H10A0.9900
N1—C81.465 (3)C10—H10B0.9900
N1—H1N10.97 (3)C11—C181.367 (4)
N2—C181.375 (3)C11—C121.442 (3)
N2—C171.378 (3)C12—C131.405 (3)
N2—H1N20.90 (3)C12—C171.409 (3)
C1—C21.417 (3)C13—C141.387 (3)
C1—C61.419 (3)C13—H130.9500
C1—C71.426 (3)C14—C151.403 (4)
C2—C31.429 (3)C14—H140.9500
C3—C41.384 (3)C15—C161.382 (4)
C4—C51.395 (3)C15—H150.9500
C4—H40.9500C16—C171.396 (3)
C5—C61.373 (3)C16—H160.9500
C5—H50.9500C18—H180.9500
C9—O2—H1O2110 (2)C10—C8—H8107.0
C3—O4—H1O4115 (2)O1—C9—O2124.9 (2)
C7—N1—C8123.31 (19)O1—C9—C8119.9 (2)
C7—N1—H1N1115.0 (18)O2—C9—C8115.22 (19)
C8—N1—H1N1121.5 (18)C11—C10—C8114.84 (18)
C18—N2—C17108.2 (2)C11—C10—H10A108.6
C18—N2—H1N2126.3 (17)C8—C10—H10A108.6
C17—N2—H1N2125.5 (17)C11—C10—H10B108.6
C2—C1—C6121.6 (2)C8—C10—H10B108.6
C2—C1—C7121.40 (19)H10A—C10—H10B107.5
C6—C1—C7117.0 (2)C18—C11—C12106.1 (2)
O3—C2—C1122.1 (2)C18—C11—C10129.5 (2)
O3—C2—C3121.2 (2)C12—C11—C10124.3 (2)
C1—C2—C3116.62 (19)C13—C12—C17119.6 (2)
O4—C3—C4118.2 (2)C13—C12—C11133.6 (2)
O4—C3—C2121.44 (19)C17—C12—C11106.9 (2)
C4—C3—C2120.3 (2)C14—C13—C12118.5 (2)
C3—C4—C5122.3 (2)C14—C13—H13120.8
C3—C4—H4118.9C12—C13—H13120.8
C5—C4—H4118.9C13—C14—C15121.1 (2)
C6—C5—C4119.1 (2)C13—C14—H14119.5
C6—C5—H5120.4C15—C14—H14119.5
C4—C5—H5120.4C16—C15—C14121.4 (2)
C5—C6—C1120.1 (2)C16—C15—H15119.3
C5—C6—H6119.9C14—C15—H15119.3
C1—C6—H6119.9C15—C16—C17117.7 (2)
N1—C7—C1123.8 (2)C15—C16—H16121.2
N1—C7—H7118.1C17—C16—H16121.2
C1—C7—H7118.1N2—C17—C16130.1 (2)
N1—C8—C9111.15 (18)N2—C17—C12108.1 (2)
N1—C8—C10111.87 (19)C16—C17—C12121.8 (2)
C9—C8—C10112.33 (18)C11—C18—N2110.8 (2)
N1—C8—H8107.0C11—C18—H18124.6
C9—C8—H8107.0N2—C18—H18124.6
C6—C1—C2—O3176.6 (2)C9—C8—C10—C11−61.5 (3)
C7—C1—C2—O3−2.4 (3)C8—C10—C11—C18−75.8 (3)
C6—C1—C2—C30.5 (3)C8—C10—C11—C12108.5 (3)
C7—C1—C2—C3−178.4 (2)C18—C11—C12—C13−179.4 (2)
O3—C2—C3—O40.3 (3)C10—C11—C12—C13−2.8 (4)
C1—C2—C3—O4176.4 (2)C18—C11—C12—C17−0.2 (2)
O3—C2—C3—C4−177.1 (2)C10—C11—C12—C17176.4 (2)
C1—C2—C3—C4−1.0 (3)C17—C12—C13—C14−0.5 (3)
O4—C3—C4—C5−177.2 (2)C11—C12—C13—C14178.6 (2)
C2—C3—C4—C50.3 (4)C12—C13—C14—C15−0.3 (3)
C3—C4—C5—C60.9 (4)C13—C14—C15—C161.3 (4)
C4—C5—C6—C1−1.3 (4)C14—C15—C16—C17−1.3 (4)
C2—C1—C6—C50.6 (4)C18—N2—C17—C16178.8 (2)
C7—C1—C6—C5179.6 (2)C18—N2—C17—C12−0.3 (3)
C8—N1—C7—C1−179.0 (2)C15—C16—C17—N2−178.5 (2)
C2—C1—C7—N1−0.7 (4)C15—C16—C17—C120.5 (4)
C6—C1—C7—N1−179.7 (2)C13—C12—C17—N2179.6 (2)
C7—N1—C8—C9−132.3 (2)C11—C12—C17—N20.3 (2)
C7—N1—C8—C10101.2 (2)C13—C12—C17—C160.4 (3)
N1—C8—C9—O1−170.5 (2)C11—C12—C17—C16−178.9 (2)
C10—C8—C9—O1−44.3 (3)C12—C11—C18—N20.0 (3)
N1—C8—C9—O29.7 (3)C10—C11—C18—N2−176.3 (2)
C10—C8—C9—O2135.9 (2)C17—N2—C18—C110.2 (3)
N1—C8—C10—C1164.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O30.97 (3)1.86 (3)2.646 (2)136 (2)
N2—H1N2···O3i0.90 (3)2.13 (3)3.020 (2)170 (2)
O2—H1O2···O3ii0.89 (3)1.64 (4)2.526 (2)174 (4)
O4—H1O4···O30.89 (3)2.45 (3)2.823 (2)106 (2)
O4—H1O4···O1i0.89 (3)1.83 (3)2.665 (2)156 (3)
C7—H7···O4iii0.952.493.197 (3)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O30.97 (3)1.86 (3)2.646 (2)136 (2)
N2—H1N2⋯O3i0.90 (3)2.13 (3)3.020 (2)170 (2)
O2—H1O2⋯O3ii0.89 (3)1.64 (4)2.526 (2)174 (4)
O4—H1O4⋯O30.89 (3)2.45 (3)2.823 (2)106 (2)
O4—H1O4⋯O1i0.89 (3)1.83 (3)2.665 (2)156 (3)
C7—H7⋯O4iii0.952.493.197 (3)132

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Hoong-Kun Fun; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05

4.  (E)-4-Allyl-2-[(2-hydroxy-phen-yl)iminiometh-yl]-6-methoxy-phenolate.

Authors:  Naser Eltaher Eltayeb; Siang Guan Teoh; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

5.  (E)-2-[(2,4-Dihy-droxy-benzyl-idene)aza-nium-yl]-3-(1H-indol-3-yl)propano-ate monohydrate.

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6.  Structure validation in chemical crystallography.

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