Literature DB >> 21582630

N-(2-Furo-yl)-N'-(2-pyrid-yl)thio-urea.

O Estévez-Hernández, J Duque, H Pérez, S Santos, Y Mascarenhas.   

Abstract

The title compound, C(11)H(9)N(3)O(2)S, crystallizes with two independent mol-ecules in the asymmetric unit. The central thio-urea core makes dihedral angles of -3.3 (3) and 0.6 (3)° with the furan carbonyl groups in each mol-ecule, whereas the pyridine ring is inclined by 4.63 (2) and 11.28 (7)°, respectively. The trans-cis geometry of the thio-urea fragment is stabilized by an intra-molecular N-H⋯N hydrogen bond between the H atom of the cis-thio-amide group and the pyridine N atom. In the crystal structure, inter-molecular bifurcated N-H⋯S and N-H⋯O hydrogen bonds form centrosymmetric tetra-mers extending along the b axis.

Entities:  

Year:  2009        PMID: 21582630      PMCID: PMC2968930          DOI: 10.1107/S1600536809011301

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Aly et al. (2007 ▶); Su et al. (2006 ▶). For related structures, see: Duque et al. (2008 ▶); Corrêa et al. (2008 ▶); Theodoro et al. (2008 ▶); Valdés-Martínez et al. (2002 ▶); Koch (2001 ▶); Pérez et al. (2008 ▶). For the synthesis, see: Otazo-Sánchez et al. (2001 ▶).

Experimental

Crystal data

C11H9N3O2S M = 247.27 Monoclinic, a = 6.9510 (1) Å b = 15.7000 (4) Å c = 20.2700 (6) Å β = 90.284 (2)° V = 2212.05 (9) Å3 Z = 8 Mo Kα radiation μ = 0.29 mm−1 T = 150 K 0.12 × 0.08 × 0.06 mm

Data collection

Enraf–Nonius KappaCCD diffractometer Absorption correction: none 22281 measured reflections 4337 independent reflections 3574 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.10 4337 reflections 323 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.46 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011301/ng2563sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011301/ng2563Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9N3O2SF(000) = 1024
Mr = 247.27Dx = 1.485 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13181 reflections
a = 6.9510 (1) Åθ = 2.9–26.0°
b = 15.7000 (4) ŵ = 0.28 mm1
c = 20.2700 (6) ÅT = 150 K
β = 90.284 (2)°Block, colorless
V = 2212.05 (9) Å30.12 × 0.08 × 0.06 mm
Z = 8
Enraf–Nonius KappaCCD diffractometer3574 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube Enraf Nonius FR590Rint = 0.060
horizontally mounted graphite crystalθmax = 26.0°, θmin = 2.9°
φ scans and ω scans with κ offsetsh = −8→8
22281 measured reflectionsk = −19→18
4337 independent reflectionsl = −24→24
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.042w = 1/[σ2(Fo2) + (0.0699P)2 + 0.3338P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.122(Δ/σ)max = 0.001
S = 1.10Δρmax = 0.45 e Å3
4337 reflectionsΔρmin = −0.46 e Å3
323 parameters
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S1A0.26900 (7)0.58701 (3)−0.01361 (2)0.03185 (16)
S10.86024 (7)0.20621 (3)−0.13099 (2)0.03742 (17)
N1A0.0427 (2)0.55696 (11)0.09207 (8)0.0285 (4)
O1A−0.12681 (18)0.64878 (9)0.02319 (7)0.0327 (3)
O20.7008 (2)−0.07818 (9)0.00044 (7)0.0379 (4)
N30.8621 (2)0.08935 (10)0.07607 (8)0.0313 (4)
N2A0.3235 (2)0.48042 (10)0.08445 (8)0.0292 (4)
N10.7790 (2)0.07419 (10)−0.04921 (9)0.0297 (4)
O2A−0.23343 (19)0.56744 (9)0.18216 (7)0.0370 (3)
N20.8903 (2)0.19839 (11)−0.00248 (8)0.0278 (4)
C30.6597 (3)−0.06607 (12)−0.06512 (10)0.0311 (4)
C2A0.2051 (2)0.53986 (12)0.05684 (9)0.0268 (4)
C10.6980 (3)0.01830 (13)−0.09411 (10)0.0330 (4)
C110.8702 (3)0.06331 (14)0.13915 (10)0.0370 (5)
H110.84520.00630.14830.044*
N3A0.1495 (2)0.44154 (11)0.17897 (8)0.0316 (4)
C1A−0.1108 (3)0.60931 (12)0.07437 (9)0.0277 (4)
C11A0.1415 (3)0.40025 (13)0.23715 (10)0.0358 (5)
H11A0.02870.40350.26150.043*
C7A0.3113 (3)0.43617 (12)0.14412 (10)0.0294 (4)
C70.8961 (2)0.17098 (12)0.06335 (9)0.0270 (4)
O10.6582 (3)0.03377 (10)−0.15091 (8)0.0527 (4)
C80.9405 (3)0.23029 (14)0.11254 (10)0.0340 (4)
H80.96410.28710.10220.041*
C3A−0.2598 (3)0.61301 (12)0.12527 (9)0.0290 (4)
C6A−0.3910 (3)0.58333 (14)0.22036 (11)0.0404 (5)
H6A−0.41160.56040.2620.048*
C10A0.2925 (3)0.35352 (14)0.26215 (11)0.0411 (5)
H10A0.28230.32570.30250.049*
C4A−0.4268 (3)0.65642 (12)0.12727 (10)0.0312 (4)
H4A−0.47670.69210.09480.037*
C60.6596 (3)−0.16117 (14)0.01396 (12)0.0418 (5)
H60.6744−0.18670.05510.05*
C90.9482 (3)0.20191 (14)0.17660 (11)0.0401 (5)
H90.97660.23980.21050.048*
C20.8401 (2)0.15650 (12)−0.05889 (9)0.0275 (4)
C5A−0.5112 (3)0.63660 (14)0.18931 (11)0.0368 (5)
H5A−0.62790.65690.20520.044*
C100.9135 (3)0.11655 (15)0.19077 (10)0.0389 (5)
H100.91950.09630.23380.047*
C9A0.4598 (3)0.34887 (15)0.22583 (11)0.0448 (5)
H9A0.56450.31820.24180.054*
C40.5942 (3)−0.13956 (14)−0.09150 (12)0.0410 (5)
H40.5561−0.1485−0.1350.049*
C8A0.4710 (3)0.38987 (14)0.16572 (10)0.0379 (5)
H8A0.58180.38670.14030.045*
C50.5951 (3)−0.20049 (14)−0.03991 (12)0.0410 (5)
H50.5577−0.2572−0.04310.049*
H2A0.425 (3)0.4683 (14)0.0623 (11)0.037 (6)*
H20.934 (3)0.2477 (17)−0.0082 (12)0.044 (7)*
H1A0.024 (3)0.5257 (16)0.1268 (12)0.043 (6)*
H10.796 (3)0.0567 (15)−0.0081 (12)0.041 (6)*
U11U22U33U12U13U23
S1A0.0344 (3)0.0315 (3)0.0297 (3)0.00331 (19)0.00427 (19)0.0052 (2)
S10.0482 (3)0.0361 (3)0.0280 (3)−0.0017 (2)0.0017 (2)0.0040 (2)
N1A0.0284 (8)0.0290 (9)0.0281 (9)0.0000 (6)0.0010 (6)0.0050 (7)
O1A0.0311 (7)0.0331 (7)0.0338 (8)−0.0008 (6)−0.0009 (5)0.0078 (6)
O20.0430 (8)0.0330 (8)0.0377 (9)−0.0026 (6)0.0002 (6)0.0033 (6)
N30.0331 (8)0.0301 (9)0.0308 (9)−0.0014 (7)−0.0010 (6)0.0036 (7)
N2A0.0291 (8)0.0297 (9)0.0287 (9)0.0039 (7)0.0026 (6)0.0016 (7)
N10.0338 (9)0.0277 (9)0.0277 (9)0.0000 (6)−0.0026 (7)0.0006 (7)
O2A0.0383 (8)0.0430 (9)0.0298 (8)0.0064 (6)0.0011 (6)0.0052 (6)
N20.0289 (8)0.0251 (9)0.0294 (9)−0.0025 (7)0.0005 (6)0.0012 (7)
C30.0282 (9)0.0312 (10)0.0340 (11)0.0029 (8)−0.0028 (7)−0.0032 (8)
C2A0.0285 (9)0.0236 (10)0.0282 (10)−0.0023 (7)−0.0014 (7)−0.0019 (7)
C10.0354 (10)0.0309 (11)0.0327 (12)0.0022 (8)−0.0039 (8)−0.0034 (8)
C110.0377 (11)0.0383 (12)0.0351 (12)0.0001 (9)−0.0003 (8)0.0087 (9)
N3A0.0361 (9)0.0301 (9)0.0285 (9)−0.0011 (7)0.0021 (6)0.0014 (7)
C1A0.0275 (9)0.0254 (10)0.0302 (11)−0.0045 (7)−0.0026 (7)0.0012 (8)
C11A0.0466 (12)0.0326 (11)0.0283 (11)−0.0042 (9)0.0026 (8)0.0012 (8)
C7A0.0359 (10)0.0242 (9)0.0280 (10)−0.0011 (8)−0.0016 (8)0.0002 (8)
C70.0216 (8)0.0302 (10)0.0293 (10)0.0009 (7)0.0011 (7)0.0023 (8)
O10.0830 (12)0.0382 (9)0.0368 (9)−0.0051 (8)−0.0204 (8)−0.0002 (7)
C80.0349 (10)0.0325 (11)0.0344 (11)−0.0032 (8)−0.0006 (8)−0.0009 (9)
C3A0.0313 (10)0.0280 (10)0.0277 (10)−0.0029 (8)−0.0026 (7)0.0016 (8)
C6A0.0450 (12)0.0450 (13)0.0312 (12)−0.0007 (9)0.0083 (9)−0.0009 (9)
C10A0.0553 (13)0.0387 (12)0.0294 (11)0.0014 (10)−0.0013 (9)0.0083 (9)
C4A0.0301 (10)0.0285 (10)0.0349 (11)−0.0014 (8)−0.0021 (7)0.0028 (8)
C60.0418 (12)0.0326 (12)0.0510 (14)−0.0034 (9)0.0031 (9)0.0079 (10)
C90.0415 (11)0.0460 (13)0.0326 (12)0.0006 (9)−0.0045 (8)−0.0061 (10)
C20.0238 (8)0.0273 (10)0.0314 (11)0.0044 (7)0.0018 (7)−0.0007 (8)
C5A0.0322 (10)0.0382 (12)0.0401 (12)−0.0015 (9)0.0065 (8)−0.0052 (9)
C100.0368 (11)0.0523 (14)0.0276 (11)0.0016 (9)−0.0003 (8)0.0046 (10)
C9A0.0500 (13)0.0462 (13)0.0383 (13)0.0116 (10)−0.0053 (10)0.0099 (10)
C40.0341 (11)0.0399 (12)0.0489 (14)0.0018 (9)−0.0076 (9)−0.0103 (10)
C8A0.0394 (11)0.0395 (12)0.0348 (12)0.0068 (9)0.0004 (8)0.0040 (9)
C50.0323 (11)0.0302 (11)0.0604 (15)−0.0014 (8)−0.0008 (9)0.0028 (10)
S1A—C2A1.6705 (19)N3A—C11A1.347 (3)
S1—C21.6633 (19)C1A—C3A1.467 (3)
N1A—C2A1.365 (2)C11A—C10A1.375 (3)
N1A—C1A1.393 (2)C11A—H11A0.93
N1A—H1A0.87 (2)C7A—C8A1.395 (3)
O1A—C1A1.213 (2)C7—C81.398 (3)
O2—C61.362 (3)C8—C91.373 (3)
O2—C31.371 (2)C8—H80.93
N3—C71.329 (2)C3A—C4A1.346 (3)
N3—C111.343 (3)C6A—C5A1.338 (3)
N2A—C2A1.363 (2)C6A—H6A0.93
N2A—C7A1.398 (3)C10A—C9A1.381 (3)
N2A—H2A0.86 (2)C10A—H10A0.93
N1—C21.375 (3)C4A—C5A1.425 (3)
N1—C11.382 (2)C4A—H4A0.93
N1—H10.89 (2)C6—C51.330 (3)
O2A—C6A1.367 (3)C6—H60.93
O2A—C3A1.369 (2)C9—C101.392 (3)
N2—C21.363 (2)C9—H90.93
N2—C71.402 (2)C5A—H5A0.93
N2—H20.84 (3)C10—H100.93
C3—C41.350 (3)C9A—C8A1.381 (3)
C3—C11.474 (3)C9A—H9A0.93
C1—O11.207 (2)C4—C51.417 (3)
C11—C101.371 (3)C4—H40.93
C11—H110.93C8A—H8A0.93
N3A—C7A1.334 (2)C5—H50.93
C2A—N1A—C1A128.01 (17)C9—C8—H8121.1
C2A—N1A—H1A116.0 (15)C7—C8—H8121.1
C1A—N1A—H1A115.3 (15)C4A—C3A—O2A110.57 (17)
C6—O2—C3106.52 (16)C4A—C3A—C1A130.76 (18)
C7—N3—C11118.14 (18)O2A—C3A—C1A118.66 (16)
C2A—N2A—C7A131.03 (17)C5A—C6A—O2A110.37 (19)
C2A—N2A—H2A115.6 (15)C5A—C6A—H6A124.8
C7A—N2A—H2A113.4 (15)O2A—C6A—H6A124.8
C2—N1—C1128.90 (18)C11A—C10A—C9A118.3 (2)
C2—N1—H1112.8 (15)C11A—C10A—H10A120.8
C1—N1—H1118.3 (15)C9A—C10A—H10A120.8
C6A—O2A—C3A106.10 (15)C3A—C4A—C5A105.96 (18)
C2—N2—C7131.01 (17)C3A—C4A—H4A127
C2—N2—H2114.8 (16)C5A—C4A—H4A127
C7—N2—H2114.0 (16)C5—C6—O2110.4 (2)
C4—C3—O2109.50 (18)C5—C6—H6124.8
C4—C3—C1132.2 (2)O2—C6—H6124.8
O2—C3—C1118.28 (17)C8—C9—C10120.1 (2)
N2A—C2A—N1A114.79 (17)C8—C9—H9119.9
N2A—C2A—S1A119.45 (14)C10—C9—H9119.9
N1A—C2A—S1A125.73 (14)N2—C2—N1114.32 (17)
O1—C1—N1126.22 (19)N2—C2—S1119.24 (15)
O1—C1—C3121.33 (18)N1—C2—S1126.44 (15)
N1—C1—C3112.44 (17)C6A—C5A—C4A107.00 (18)
N3—C11—C10123.3 (2)C6A—C5A—H5A126.5
N3—C11—H11118.4C4A—C5A—H5A126.5
C10—C11—H11118.4C11—C10—C9117.83 (19)
C7A—N3A—C11A118.13 (17)C11—C10—H10121.1
O1A—C1A—N1A126.07 (17)C9—C10—H10121.1
O1A—C1A—C3A121.29 (17)C10A—C9A—C8A119.8 (2)
N1A—C1A—C3A112.65 (16)C10A—C9A—H9A120.1
N3A—C11A—C10A123.00 (19)C8A—C9A—H9A120.1
N3A—C11A—H11A118.5C3—C4—C5106.5 (2)
C10A—C11A—H11A118.5C3—C4—H4126.7
N3A—C7A—C8A122.58 (18)C5—C4—H4126.7
N3A—C7A—N2A118.80 (17)C9A—C8A—C7A118.12 (19)
C8A—C7A—N2A118.60 (17)C9A—C8A—H8A120.9
N3—C7—C8122.89 (18)C7A—C8A—H8A120.9
N3—C7—N2118.45 (17)C6—C5—C4107.01 (19)
C8—C7—N2118.65 (17)C6—C5—H5126.5
C9—C8—C7117.75 (19)C4—C5—H5126.5
C6—O2—C3—C40.1 (2)C6A—O2A—C3A—C1A179.28 (17)
C6—O2—C3—C1−177.81 (17)O1A—C1A—C3A—C4A−0.9 (3)
C7A—N2A—C2A—N1A−2.9 (3)N1A—C1A—C3A—C4A179.17 (19)
C7A—N2A—C2A—S1A175.31 (16)O1A—C1A—C3A—O2A−179.68 (17)
C1A—N1A—C2A—N2A−174.81 (17)N1A—C1A—C3A—O2A0.4 (2)
C1A—N1A—C2A—S1A7.1 (3)C3A—O2A—C6A—C5A−0.2 (2)
C2—N1—C1—O1−3.4 (3)N3A—C11A—C10A—C9A0.0 (3)
C2—N1—C1—C3177.41 (17)O2A—C3A—C4A—C5A−0.3 (2)
C4—C3—C1—O15.4 (3)C1A—C3A—C4A—C5A−179.11 (19)
O2—C3—C1—O1−177.24 (19)C3—O2—C6—C5−0.1 (2)
C4—C3—C1—N1−175.4 (2)C7—C8—C9—C100.4 (3)
O2—C3—C1—N12.0 (2)C7—N2—C2—N12.3 (3)
C7—N3—C11—C10−0.6 (3)C7—N2—C2—S1−176.68 (14)
C2A—N1A—C1A—O1A0.7 (3)C1—N1—C2—N2171.78 (17)
C2A—N1A—C1A—C3A−179.38 (17)C1—N1—C2—S1−9.3 (3)
C7A—N3A—C11A—C10A0.4 (3)O2A—C6A—C5A—C4A0.0 (2)
C11A—N3A—C7A—C8A−0.1 (3)C3A—C4A—C5A—C6A0.1 (2)
C11A—N3A—C7A—N2A−178.41 (17)N3—C11—C10—C90.8 (3)
C2A—N2A—C7A—N3A9.8 (3)C8—C9—C10—C11−0.7 (3)
C2A—N2A—C7A—C8A−168.59 (19)C11A—C10A—C9A—C8A−0.7 (4)
C11—N3—C7—C80.3 (3)O2—C3—C4—C5−0.2 (2)
C11—N3—C7—N2179.18 (16)C1—C3—C4—C5177.4 (2)
C2—N2—C7—N35.8 (3)C10A—C9A—C8A—C7A0.9 (3)
C2—N2—C7—C8−175.35 (17)N3A—C7A—C8A—C9A−0.5 (3)
N3—C7—C8—C9−0.2 (3)N2A—C7A—C8A—C9A177.75 (19)
N2—C7—C8—C9−179.06 (16)O2—C6—C5—C40.0 (2)
C6A—O2A—C3A—C4A0.3 (2)C3—C4—C5—C60.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.89 (2)2.23 (2)2.653 (2)109.3 (18)
N1—H1···N30.89 (2)1.84 (2)2.612 (2)145 (2)
N1A—H1A···O2A0.87 (2)2.22 (2)2.661 (2)111.6 (18)
N1A—H1A···N3A0.87 (2)1.90 (2)2.632 (2)141 (2)
N2—H2···O1Ai0.84 (3)2.13 (2)2.940 (2)162 (2)
N2A—H2A···S1Ai0.86 (2)2.51 (2)3.3530 (15)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.89 (2)2.23 (2)2.653 (2)109.3 (18)
N1—H1⋯N30.89 (2)1.84 (2)2.612 (2)145 (2)
N1A—H1A⋯O2A0.87 (2)2.22 (2)2.661 (2)111.6 (18)
N1A—H1A⋯N3A0.87 (2)1.90 (2)2.632 (2)141 (2)
N2—H2⋯O1Ai0.84 (3)2.13 (2)2.940 (2)162 (2)
N2A—H2A⋯S1Ai0.86 (2)2.51 (2)3.3530 (15)170 (2)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-(2-Furo-yl)-3-(o-tol-yl)thio-urea.

Authors:  Rodrigo S Corrêa; O Estévez-Hernández; J Ellena; J Duque
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

3.  1-Furoyl-3-methyl-3-phenyl-thio-urea.

Authors:  Hiram Pérez; Yvonne Mascarenhas; Osvaldo Estévez-Hernández; Sauli Santos; Julio Duque
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-25

4.  1-(3-Cyano-phen-yl)-3-(2-furo-yl)thio-urea.

Authors:  Jahyr E Theodoro; Yvonne Mascarenhas; Javier Ellena; Osvaldo Estévez-Hernández; Julio Duque
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-07

5.  N-(2-Furylcarbon-yl)piperidine-1-carbo-thio-amide.

Authors:  J Duque; O Estévez-Hernández; Yvonne Mascarenhas; J Ellena; Rodrigo S Corrêa
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12
  5 in total
  1 in total

1.  1-(4-Chloro-benzo-yl)-3-(3-methyl-pyridin-2-yl)thio-urea.

Authors:  M Sukeri M Yusof; Nurwahyuni A Mushtari; Maisara A Kadir; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-17
  1 in total

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