| Literature DB >> 21582630 |
O Estévez-Hernández, J Duque, H Pérez, S Santos, Y Mascarenhas.
Abstract
The title compound, C(11)H(9)N(3)O(2)S, crystallizes with two independent mol-ecules in the asymmetric unit. The central thio-urea core makes dihedral angles of -3.3 (3) and 0.6 (3)° with the furan carbonyl groups in each mol-ecule, whereas the pyridine ring is inclined by 4.63 (2) and 11.28 (7)°, respectively. The trans-cis geometry of the thio-urea fragment is stabilized by an intra-molecular N-H⋯N hydrogen bond between the H atom of the cis-thio-amide group and the pyridine N atom. In the crystal structure, inter-molecular bifurcated N-H⋯S and N-H⋯O hydrogen bonds form centrosymmetric tetra-mers extending along the b axis.Entities:
Year: 2009 PMID: 21582630 PMCID: PMC2968930 DOI: 10.1107/S1600536809011301
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 13181 reflections |
| θ = 2.9–26.0° | |
| µ = 0.28 mm−1 | |
| β = 90.284 (2)° | Block, colorless |
| 0.12 × 0.08 × 0.06 mm | |
| Enraf–Nonius KappaCCD diffractometer | 3574 reflections with |
| Radiation source: fine-focus sealed tube Enraf Nonius FR590 | |
| horizontally mounted graphite crystal | θmax = 26.0°, θmin = 2.9° |
| φ scans and ω scans with κ offsets | |
| 22281 measured reflections | |
| 4337 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.45 e Å−3 | |
| 4337 reflections | Δρmin = −0.46 e Å−3 |
| 323 parameters |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| S1A | 0.26900 (7) | 0.58701 (3) | −0.01361 (2) | 0.03185 (16) | |
| S1 | 0.86024 (7) | 0.20621 (3) | −0.13099 (2) | 0.03742 (17) | |
| N1A | 0.0427 (2) | 0.55696 (11) | 0.09207 (8) | 0.0285 (4) | |
| O1A | −0.12681 (18) | 0.64878 (9) | 0.02319 (7) | 0.0327 (3) | |
| O2 | 0.7008 (2) | −0.07818 (9) | 0.00044 (7) | 0.0379 (4) | |
| N3 | 0.8621 (2) | 0.08935 (10) | 0.07607 (8) | 0.0313 (4) | |
| N2A | 0.3235 (2) | 0.48042 (10) | 0.08445 (8) | 0.0292 (4) | |
| N1 | 0.7790 (2) | 0.07419 (10) | −0.04921 (9) | 0.0297 (4) | |
| O2A | −0.23343 (19) | 0.56744 (9) | 0.18216 (7) | 0.0370 (3) | |
| N2 | 0.8903 (2) | 0.19839 (11) | −0.00248 (8) | 0.0278 (4) | |
| C3 | 0.6597 (3) | −0.06607 (12) | −0.06512 (10) | 0.0311 (4) | |
| C2A | 0.2051 (2) | 0.53986 (12) | 0.05684 (9) | 0.0268 (4) | |
| C1 | 0.6980 (3) | 0.01830 (13) | −0.09411 (10) | 0.0330 (4) | |
| C11 | 0.8702 (3) | 0.06331 (14) | 0.13915 (10) | 0.0370 (5) | |
| H11 | 0.8452 | 0.0063 | 0.1483 | 0.044* | |
| N3A | 0.1495 (2) | 0.44154 (11) | 0.17897 (8) | 0.0316 (4) | |
| C1A | −0.1108 (3) | 0.60931 (12) | 0.07437 (9) | 0.0277 (4) | |
| C11A | 0.1415 (3) | 0.40025 (13) | 0.23715 (10) | 0.0358 (5) | |
| H11A | 0.0287 | 0.4035 | 0.2615 | 0.043* | |
| C7A | 0.3113 (3) | 0.43617 (12) | 0.14412 (10) | 0.0294 (4) | |
| C7 | 0.8961 (2) | 0.17098 (12) | 0.06335 (9) | 0.0270 (4) | |
| O1 | 0.6582 (3) | 0.03377 (10) | −0.15091 (8) | 0.0527 (4) | |
| C8 | 0.9405 (3) | 0.23029 (14) | 0.11254 (10) | 0.0340 (4) | |
| H8 | 0.9641 | 0.2871 | 0.1022 | 0.041* | |
| C3A | −0.2598 (3) | 0.61301 (12) | 0.12527 (9) | 0.0290 (4) | |
| C6A | −0.3910 (3) | 0.58333 (14) | 0.22036 (11) | 0.0404 (5) | |
| H6A | −0.4116 | 0.5604 | 0.262 | 0.048* | |
| C10A | 0.2925 (3) | 0.35352 (14) | 0.26215 (11) | 0.0411 (5) | |
| H10A | 0.2823 | 0.3257 | 0.3025 | 0.049* | |
| C4A | −0.4268 (3) | 0.65642 (12) | 0.12727 (10) | 0.0312 (4) | |
| H4A | −0.4767 | 0.6921 | 0.0948 | 0.037* | |
| C6 | 0.6596 (3) | −0.16117 (14) | 0.01396 (12) | 0.0418 (5) | |
| H6 | 0.6744 | −0.1867 | 0.0551 | 0.05* | |
| C9 | 0.9482 (3) | 0.20191 (14) | 0.17660 (11) | 0.0401 (5) | |
| H9 | 0.9766 | 0.2398 | 0.2105 | 0.048* | |
| C2 | 0.8401 (2) | 0.15650 (12) | −0.05889 (9) | 0.0275 (4) | |
| C5A | −0.5112 (3) | 0.63660 (14) | 0.18931 (11) | 0.0368 (5) | |
| H5A | −0.6279 | 0.6569 | 0.2052 | 0.044* | |
| C10 | 0.9135 (3) | 0.11655 (15) | 0.19077 (10) | 0.0389 (5) | |
| H10 | 0.9195 | 0.0963 | 0.2338 | 0.047* | |
| C9A | 0.4598 (3) | 0.34887 (15) | 0.22583 (11) | 0.0448 (5) | |
| H9A | 0.5645 | 0.3182 | 0.2418 | 0.054* | |
| C4 | 0.5942 (3) | −0.13956 (14) | −0.09150 (12) | 0.0410 (5) | |
| H4 | 0.5561 | −0.1485 | −0.135 | 0.049* | |
| C8A | 0.4710 (3) | 0.38987 (14) | 0.16572 (10) | 0.0379 (5) | |
| H8A | 0.5818 | 0.3867 | 0.1403 | 0.045* | |
| C5 | 0.5951 (3) | −0.20049 (14) | −0.03991 (12) | 0.0410 (5) | |
| H5 | 0.5577 | −0.2572 | −0.0431 | 0.049* | |
| H2A | 0.425 (3) | 0.4683 (14) | 0.0623 (11) | 0.037 (6)* | |
| H2 | 0.934 (3) | 0.2477 (17) | −0.0082 (12) | 0.044 (7)* | |
| H1A | 0.024 (3) | 0.5257 (16) | 0.1268 (12) | 0.043 (6)* | |
| H1 | 0.796 (3) | 0.0567 (15) | −0.0081 (12) | 0.041 (6)* |
| S1A | 0.0344 (3) | 0.0315 (3) | 0.0297 (3) | 0.00331 (19) | 0.00427 (19) | 0.0052 (2) |
| S1 | 0.0482 (3) | 0.0361 (3) | 0.0280 (3) | −0.0017 (2) | 0.0017 (2) | 0.0040 (2) |
| N1A | 0.0284 (8) | 0.0290 (9) | 0.0281 (9) | 0.0000 (6) | 0.0010 (6) | 0.0050 (7) |
| O1A | 0.0311 (7) | 0.0331 (7) | 0.0338 (8) | −0.0008 (6) | −0.0009 (5) | 0.0078 (6) |
| O2 | 0.0430 (8) | 0.0330 (8) | 0.0377 (9) | −0.0026 (6) | 0.0002 (6) | 0.0033 (6) |
| N3 | 0.0331 (8) | 0.0301 (9) | 0.0308 (9) | −0.0014 (7) | −0.0010 (6) | 0.0036 (7) |
| N2A | 0.0291 (8) | 0.0297 (9) | 0.0287 (9) | 0.0039 (7) | 0.0026 (6) | 0.0016 (7) |
| N1 | 0.0338 (9) | 0.0277 (9) | 0.0277 (9) | 0.0000 (6) | −0.0026 (7) | 0.0006 (7) |
| O2A | 0.0383 (8) | 0.0430 (9) | 0.0298 (8) | 0.0064 (6) | 0.0011 (6) | 0.0052 (6) |
| N2 | 0.0289 (8) | 0.0251 (9) | 0.0294 (9) | −0.0025 (7) | 0.0005 (6) | 0.0012 (7) |
| C3 | 0.0282 (9) | 0.0312 (10) | 0.0340 (11) | 0.0029 (8) | −0.0028 (7) | −0.0032 (8) |
| C2A | 0.0285 (9) | 0.0236 (10) | 0.0282 (10) | −0.0023 (7) | −0.0014 (7) | −0.0019 (7) |
| C1 | 0.0354 (10) | 0.0309 (11) | 0.0327 (12) | 0.0022 (8) | −0.0039 (8) | −0.0034 (8) |
| C11 | 0.0377 (11) | 0.0383 (12) | 0.0351 (12) | 0.0001 (9) | −0.0003 (8) | 0.0087 (9) |
| N3A | 0.0361 (9) | 0.0301 (9) | 0.0285 (9) | −0.0011 (7) | 0.0021 (6) | 0.0014 (7) |
| C1A | 0.0275 (9) | 0.0254 (10) | 0.0302 (11) | −0.0045 (7) | −0.0026 (7) | 0.0012 (8) |
| C11A | 0.0466 (12) | 0.0326 (11) | 0.0283 (11) | −0.0042 (9) | 0.0026 (8) | 0.0012 (8) |
| C7A | 0.0359 (10) | 0.0242 (9) | 0.0280 (10) | −0.0011 (8) | −0.0016 (8) | 0.0002 (8) |
| C7 | 0.0216 (8) | 0.0302 (10) | 0.0293 (10) | 0.0009 (7) | 0.0011 (7) | 0.0023 (8) |
| O1 | 0.0830 (12) | 0.0382 (9) | 0.0368 (9) | −0.0051 (8) | −0.0204 (8) | −0.0002 (7) |
| C8 | 0.0349 (10) | 0.0325 (11) | 0.0344 (11) | −0.0032 (8) | −0.0006 (8) | −0.0009 (9) |
| C3A | 0.0313 (10) | 0.0280 (10) | 0.0277 (10) | −0.0029 (8) | −0.0026 (7) | 0.0016 (8) |
| C6A | 0.0450 (12) | 0.0450 (13) | 0.0312 (12) | −0.0007 (9) | 0.0083 (9) | −0.0009 (9) |
| C10A | 0.0553 (13) | 0.0387 (12) | 0.0294 (11) | 0.0014 (10) | −0.0013 (9) | 0.0083 (9) |
| C4A | 0.0301 (10) | 0.0285 (10) | 0.0349 (11) | −0.0014 (8) | −0.0021 (7) | 0.0028 (8) |
| C6 | 0.0418 (12) | 0.0326 (12) | 0.0510 (14) | −0.0034 (9) | 0.0031 (9) | 0.0079 (10) |
| C9 | 0.0415 (11) | 0.0460 (13) | 0.0326 (12) | 0.0006 (9) | −0.0045 (8) | −0.0061 (10) |
| C2 | 0.0238 (8) | 0.0273 (10) | 0.0314 (11) | 0.0044 (7) | 0.0018 (7) | −0.0007 (8) |
| C5A | 0.0322 (10) | 0.0382 (12) | 0.0401 (12) | −0.0015 (9) | 0.0065 (8) | −0.0052 (9) |
| C10 | 0.0368 (11) | 0.0523 (14) | 0.0276 (11) | 0.0016 (9) | −0.0003 (8) | 0.0046 (10) |
| C9A | 0.0500 (13) | 0.0462 (13) | 0.0383 (13) | 0.0116 (10) | −0.0053 (10) | 0.0099 (10) |
| C4 | 0.0341 (11) | 0.0399 (12) | 0.0489 (14) | 0.0018 (9) | −0.0076 (9) | −0.0103 (10) |
| C8A | 0.0394 (11) | 0.0395 (12) | 0.0348 (12) | 0.0068 (9) | 0.0004 (8) | 0.0040 (9) |
| C5 | 0.0323 (11) | 0.0302 (11) | 0.0604 (15) | −0.0014 (8) | −0.0008 (9) | 0.0028 (10) |
| S1A—C2A | 1.6705 (19) | N3A—C11A | 1.347 (3) |
| S1—C2 | 1.6633 (19) | C1A—C3A | 1.467 (3) |
| N1A—C2A | 1.365 (2) | C11A—C10A | 1.375 (3) |
| N1A—C1A | 1.393 (2) | C11A—H11A | 0.93 |
| N1A—H1A | 0.87 (2) | C7A—C8A | 1.395 (3) |
| O1A—C1A | 1.213 (2) | C7—C8 | 1.398 (3) |
| O2—C6 | 1.362 (3) | C8—C9 | 1.373 (3) |
| O2—C3 | 1.371 (2) | C8—H8 | 0.93 |
| N3—C7 | 1.329 (2) | C3A—C4A | 1.346 (3) |
| N3—C11 | 1.343 (3) | C6A—C5A | 1.338 (3) |
| N2A—C2A | 1.363 (2) | C6A—H6A | 0.93 |
| N2A—C7A | 1.398 (3) | C10A—C9A | 1.381 (3) |
| N2A—H2A | 0.86 (2) | C10A—H10A | 0.93 |
| N1—C2 | 1.375 (3) | C4A—C5A | 1.425 (3) |
| N1—C1 | 1.382 (2) | C4A—H4A | 0.93 |
| N1—H1 | 0.89 (2) | C6—C5 | 1.330 (3) |
| O2A—C6A | 1.367 (3) | C6—H6 | 0.93 |
| O2A—C3A | 1.369 (2) | C9—C10 | 1.392 (3) |
| N2—C2 | 1.363 (2) | C9—H9 | 0.93 |
| N2—C7 | 1.402 (2) | C5A—H5A | 0.93 |
| N2—H2 | 0.84 (3) | C10—H10 | 0.93 |
| C3—C4 | 1.350 (3) | C9A—C8A | 1.381 (3) |
| C3—C1 | 1.474 (3) | C9A—H9A | 0.93 |
| C1—O1 | 1.207 (2) | C4—C5 | 1.417 (3) |
| C11—C10 | 1.371 (3) | C4—H4 | 0.93 |
| C11—H11 | 0.93 | C8A—H8A | 0.93 |
| N3A—C7A | 1.334 (2) | C5—H5 | 0.93 |
| C2A—N1A—C1A | 128.01 (17) | C9—C8—H8 | 121.1 |
| C2A—N1A—H1A | 116.0 (15) | C7—C8—H8 | 121.1 |
| C1A—N1A—H1A | 115.3 (15) | C4A—C3A—O2A | 110.57 (17) |
| C6—O2—C3 | 106.52 (16) | C4A—C3A—C1A | 130.76 (18) |
| C7—N3—C11 | 118.14 (18) | O2A—C3A—C1A | 118.66 (16) |
| C2A—N2A—C7A | 131.03 (17) | C5A—C6A—O2A | 110.37 (19) |
| C2A—N2A—H2A | 115.6 (15) | C5A—C6A—H6A | 124.8 |
| C7A—N2A—H2A | 113.4 (15) | O2A—C6A—H6A | 124.8 |
| C2—N1—C1 | 128.90 (18) | C11A—C10A—C9A | 118.3 (2) |
| C2—N1—H1 | 112.8 (15) | C11A—C10A—H10A | 120.8 |
| C1—N1—H1 | 118.3 (15) | C9A—C10A—H10A | 120.8 |
| C6A—O2A—C3A | 106.10 (15) | C3A—C4A—C5A | 105.96 (18) |
| C2—N2—C7 | 131.01 (17) | C3A—C4A—H4A | 127 |
| C2—N2—H2 | 114.8 (16) | C5A—C4A—H4A | 127 |
| C7—N2—H2 | 114.0 (16) | C5—C6—O2 | 110.4 (2) |
| C4—C3—O2 | 109.50 (18) | C5—C6—H6 | 124.8 |
| C4—C3—C1 | 132.2 (2) | O2—C6—H6 | 124.8 |
| O2—C3—C1 | 118.28 (17) | C8—C9—C10 | 120.1 (2) |
| N2A—C2A—N1A | 114.79 (17) | C8—C9—H9 | 119.9 |
| N2A—C2A—S1A | 119.45 (14) | C10—C9—H9 | 119.9 |
| N1A—C2A—S1A | 125.73 (14) | N2—C2—N1 | 114.32 (17) |
| O1—C1—N1 | 126.22 (19) | N2—C2—S1 | 119.24 (15) |
| O1—C1—C3 | 121.33 (18) | N1—C2—S1 | 126.44 (15) |
| N1—C1—C3 | 112.44 (17) | C6A—C5A—C4A | 107.00 (18) |
| N3—C11—C10 | 123.3 (2) | C6A—C5A—H5A | 126.5 |
| N3—C11—H11 | 118.4 | C4A—C5A—H5A | 126.5 |
| C10—C11—H11 | 118.4 | C11—C10—C9 | 117.83 (19) |
| C7A—N3A—C11A | 118.13 (17) | C11—C10—H10 | 121.1 |
| O1A—C1A—N1A | 126.07 (17) | C9—C10—H10 | 121.1 |
| O1A—C1A—C3A | 121.29 (17) | C10A—C9A—C8A | 119.8 (2) |
| N1A—C1A—C3A | 112.65 (16) | C10A—C9A—H9A | 120.1 |
| N3A—C11A—C10A | 123.00 (19) | C8A—C9A—H9A | 120.1 |
| N3A—C11A—H11A | 118.5 | C3—C4—C5 | 106.5 (2) |
| C10A—C11A—H11A | 118.5 | C3—C4—H4 | 126.7 |
| N3A—C7A—C8A | 122.58 (18) | C5—C4—H4 | 126.7 |
| N3A—C7A—N2A | 118.80 (17) | C9A—C8A—C7A | 118.12 (19) |
| C8A—C7A—N2A | 118.60 (17) | C9A—C8A—H8A | 120.9 |
| N3—C7—C8 | 122.89 (18) | C7A—C8A—H8A | 120.9 |
| N3—C7—N2 | 118.45 (17) | C6—C5—C4 | 107.01 (19) |
| C8—C7—N2 | 118.65 (17) | C6—C5—H5 | 126.5 |
| C9—C8—C7 | 117.75 (19) | C4—C5—H5 | 126.5 |
| C6—O2—C3—C4 | 0.1 (2) | C6A—O2A—C3A—C1A | 179.28 (17) |
| C6—O2—C3—C1 | −177.81 (17) | O1A—C1A—C3A—C4A | −0.9 (3) |
| C7A—N2A—C2A—N1A | −2.9 (3) | N1A—C1A—C3A—C4A | 179.17 (19) |
| C7A—N2A—C2A—S1A | 175.31 (16) | O1A—C1A—C3A—O2A | −179.68 (17) |
| C1A—N1A—C2A—N2A | −174.81 (17) | N1A—C1A—C3A—O2A | 0.4 (2) |
| C1A—N1A—C2A—S1A | 7.1 (3) | C3A—O2A—C6A—C5A | −0.2 (2) |
| C2—N1—C1—O1 | −3.4 (3) | N3A—C11A—C10A—C9A | 0.0 (3) |
| C2—N1—C1—C3 | 177.41 (17) | O2A—C3A—C4A—C5A | −0.3 (2) |
| C4—C3—C1—O1 | 5.4 (3) | C1A—C3A—C4A—C5A | −179.11 (19) |
| O2—C3—C1—O1 | −177.24 (19) | C3—O2—C6—C5 | −0.1 (2) |
| C4—C3—C1—N1 | −175.4 (2) | C7—C8—C9—C10 | 0.4 (3) |
| O2—C3—C1—N1 | 2.0 (2) | C7—N2—C2—N1 | 2.3 (3) |
| C7—N3—C11—C10 | −0.6 (3) | C7—N2—C2—S1 | −176.68 (14) |
| C2A—N1A—C1A—O1A | 0.7 (3) | C1—N1—C2—N2 | 171.78 (17) |
| C2A—N1A—C1A—C3A | −179.38 (17) | C1—N1—C2—S1 | −9.3 (3) |
| C7A—N3A—C11A—C10A | 0.4 (3) | O2A—C6A—C5A—C4A | 0.0 (2) |
| C11A—N3A—C7A—C8A | −0.1 (3) | C3A—C4A—C5A—C6A | 0.1 (2) |
| C11A—N3A—C7A—N2A | −178.41 (17) | N3—C11—C10—C9 | 0.8 (3) |
| C2A—N2A—C7A—N3A | 9.8 (3) | C8—C9—C10—C11 | −0.7 (3) |
| C2A—N2A—C7A—C8A | −168.59 (19) | C11A—C10A—C9A—C8A | −0.7 (4) |
| C11—N3—C7—C8 | 0.3 (3) | O2—C3—C4—C5 | −0.2 (2) |
| C11—N3—C7—N2 | 179.18 (16) | C1—C3—C4—C5 | 177.4 (2) |
| C2—N2—C7—N3 | 5.8 (3) | C10A—C9A—C8A—C7A | 0.9 (3) |
| C2—N2—C7—C8 | −175.35 (17) | N3A—C7A—C8A—C9A | −0.5 (3) |
| N3—C7—C8—C9 | −0.2 (3) | N2A—C7A—C8A—C9A | 177.75 (19) |
| N2—C7—C8—C9 | −179.06 (16) | O2—C6—C5—C4 | 0.0 (2) |
| C6A—O2A—C3A—C4A | 0.3 (2) | C3—C4—C5—C6 | 0.1 (2) |
| H··· | ||||
| N1—H1···O2 | 0.89 (2) | 2.23 (2) | 2.653 (2) | 109.3 (18) |
| N1—H1···N3 | 0.89 (2) | 1.84 (2) | 2.612 (2) | 145 (2) |
| N1A—H1A···O2A | 0.87 (2) | 2.22 (2) | 2.661 (2) | 111.6 (18) |
| N1A—H1A···N3A | 0.87 (2) | 1.90 (2) | 2.632 (2) | 141 (2) |
| N2—H2···O1Ai | 0.84 (3) | 2.13 (2) | 2.940 (2) | 162 (2) |
| N2A—H2A···S1Ai | 0.86 (2) | 2.51 (2) | 3.3530 (15) | 170 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O2 | 0.89 (2) | 2.23 (2) | 2.653 (2) | 109.3 (18) |
| N1—H1⋯N3 | 0.89 (2) | 1.84 (2) | 2.612 (2) | 145 (2) |
| N1 | 0.87 (2) | 2.22 (2) | 2.661 (2) | 111.6 (18) |
| N1 | 0.87 (2) | 1.90 (2) | 2.632 (2) | 141 (2) |
| N2—H2⋯O1 | 0.84 (3) | 2.13 (2) | 2.940 (2) | 162 (2) |
| N2 | 0.86 (2) | 2.51 (2) | 3.3530 (15) | 170 (2) |
Symmetry code: (i) .