Literature DB >> 22058908

The 1:1 adduct of caffeine and 2-(1,3-dioxoisoindolin-2-yl)acetic acid.

Moazzam H Bhatti, Uzma Yunus, Sohail Saeed, Syed Raza Shah, Wing-Tak Wong.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE ADDUCT [SYSTEMATIC NAME: 2-(1,3-dioxoisoindolin-2-yl)acetic acid-1,3,7-trimethyl-1,2,3,6-tetra-hydro-7H-purine-2,6-dione (1/1)], C(8)H(10)N(4)O(2)·C(10)H(7)NO(4), the components are linked by an O-H⋯N hydrogen-bond and no proton transfer occurs.

Entities:  

Year:  2011        PMID: 22058908      PMCID: PMC3200756          DOI: 10.1107/S1600536811030182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to N-phthaloylglycine and its derivatives, see: Antunes et al. (1998 ▶); Barooah et al. (2006a ▶,b ▶); Khan & Ismail (2002 ▶); Shariat & Abdollahi (2004 ▶); Yunus et al. (2008 ▶).

Experimental

Crystal data

C8H10N4O2·C10H7NO4 M = 399.37 Monoclinic, a = 14.6595 (5) Å b = 4.6567 (2) Å c = 26.5281 (8) Å β = 101.408 (2)° V = 1775.16 (11) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.48 × 0.16 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008b ▶) T min = 0.947, T max = 0.989 20916 measured reflections 3373 independent reflections 2268 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.03 3373 reflections 269 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008a ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008a ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811030182/ds2126sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811030182/ds2126Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811030182/ds2126Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N4O2·C10H7NO4F(000) = 832
Mr = 399.37Dx = 1.494 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2850 reflections
a = 14.6595 (5) Åθ = 2.9–23.0°
b = 4.6567 (2) ŵ = 0.12 mm1
c = 26.5281 (8) ÅT = 296 K
β = 101.408 (2)°Needle, colourless
V = 1775.16 (11) Å30.48 × 0.16 × 0.10 mm
Z = 4
Bruker APEXII CCD diffractometer3373 independent reflections
Radiation source: fine-focus sealed tube2268 reflections with I > 2σ(I)
graphiteRint = 0.045
ω and φ scanθmax = 25.7°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008b)h = −17→17
Tmin = 0.947, Tmax = 0.989k = −5→5
20916 measured reflectionsl = −32→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0683P)2 + 0.2661P] where P = (Fo2 + 2Fc2)/3
3373 reflections(Δ/σ)max = 0.005
269 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.22787 (11)0.5983 (3)0.16097 (6)0.0524 (4)
H10.293 (2)0.537 (6)0.1631 (11)0.096 (9)*
O20.29779 (10)0.9442 (3)0.21235 (6)0.0574 (4)
O3−0.01236 (11)0.5371 (4)0.21311 (6)0.0592 (4)
O40.08996 (11)1.0227 (4)0.08551 (6)0.0630 (5)
O50.68437 (11)0.0115 (4)0.15118 (7)0.0657 (5)
O60.42324 (13)−0.2400 (4)0.03383 (6)0.0715 (5)
N10.05672 (10)0.8102 (4)0.15825 (6)0.0416 (4)
N20.55660 (11)0.4293 (4)0.19480 (6)0.0420 (4)
N30.55304 (13)−0.1112 (4)0.09235 (7)0.0489 (5)
N40.40577 (12)0.0946 (4)0.09313 (6)0.0440 (4)
N50.40629 (11)0.4590 (4)0.15872 (6)0.0409 (4)
C10.22844 (14)0.8265 (5)0.19031 (8)0.0408 (5)
C20.13310 (13)0.9294 (5)0.19542 (8)0.0459 (5)
H2A0.12370.88250.22970.055*
H2B0.13131.13690.19220.055*
C30.04313 (14)0.8602 (5)0.10534 (8)0.0451 (5)
C4−0.03699 (14)0.6796 (5)0.08152 (8)0.0430 (5)
C5−0.07858 (17)0.6416 (6)0.03054 (9)0.0577 (6)
H5−0.05820.74060.00440.069*
C6−0.15203 (19)0.4493 (6)0.02013 (10)0.0683 (8)
H6−0.18060.4149−0.01390.082*
C7−0.18374 (17)0.3079 (6)0.05892 (11)0.0683 (7)
H7−0.23400.18310.05050.082*
C8−0.14258 (15)0.3469 (5)0.11024 (10)0.0568 (6)
H8−0.16400.25160.13640.068*
C9−0.06796 (13)0.5348 (5)0.12049 (8)0.0434 (5)
C10−0.00813 (14)0.6162 (5)0.17002 (8)0.0425 (5)
C110.47493 (14)0.5566 (5)0.19502 (8)0.0420 (5)
H110.46700.69940.21830.050*
C120.54018 (13)0.2291 (4)0.15529 (7)0.0389 (5)
C130.60057 (15)0.0424 (5)0.13510 (9)0.0466 (6)
C140.45764 (16)−0.0942 (5)0.07064 (8)0.0488 (6)
C150.44793 (13)0.2549 (4)0.13435 (7)0.0372 (5)
C160.64351 (16)0.4833 (6)0.23127 (9)0.0610 (7)
H16A0.69280.51420.21280.073*
H16B0.65820.32060.25360.073*
H16C0.63660.65060.25130.073*
C170.60798 (19)−0.3018 (6)0.06585 (10)0.0692 (8)
H17A0.6630−0.36170.08950.083*
H17B0.6253−0.20100.03760.083*
H17C0.5715−0.46730.05310.083*
C180.30650 (16)0.1200 (6)0.07221 (10)0.0652 (7)
H18A0.29700.16050.03610.078*
H18B0.28100.27320.08930.078*
H18C0.2761−0.05690.07750.078*
U11U22U33U12U13U23
O10.0379 (9)0.0535 (10)0.0644 (10)0.0043 (7)0.0064 (7)−0.0183 (8)
O20.0371 (9)0.0605 (10)0.0714 (11)−0.0044 (8)0.0033 (8)−0.0154 (8)
O30.0578 (10)0.0744 (11)0.0468 (9)0.0017 (9)0.0134 (8)0.0143 (8)
O40.0560 (10)0.0731 (11)0.0613 (11)−0.0102 (9)0.0155 (8)0.0140 (9)
O50.0414 (10)0.0730 (12)0.0859 (13)0.0115 (8)0.0208 (9)0.0056 (9)
O60.0895 (13)0.0668 (12)0.0590 (11)−0.0085 (10)0.0171 (9)−0.0233 (10)
N10.0319 (9)0.0526 (10)0.0395 (10)0.0017 (8)0.0047 (7)0.0017 (8)
N20.0363 (9)0.0465 (10)0.0430 (10)−0.0046 (8)0.0077 (8)0.0009 (8)
N30.0544 (12)0.0428 (10)0.0551 (12)0.0053 (9)0.0244 (9)−0.0002 (9)
N40.0429 (10)0.0444 (10)0.0441 (10)−0.0007 (8)0.0071 (8)−0.0040 (9)
N50.0370 (9)0.0433 (10)0.0431 (10)0.0023 (8)0.0095 (8)−0.0031 (8)
C10.0369 (11)0.0441 (12)0.0404 (12)0.0010 (10)0.0054 (9)0.0014 (10)
C20.0374 (11)0.0496 (13)0.0489 (13)0.0055 (10)0.0043 (10)−0.0073 (10)
C30.0381 (11)0.0517 (13)0.0464 (13)0.0073 (10)0.0105 (10)0.0073 (11)
C40.0374 (11)0.0473 (12)0.0435 (12)0.0077 (10)0.0058 (9)−0.0001 (10)
C50.0557 (14)0.0676 (16)0.0465 (14)0.0128 (13)0.0020 (11)−0.0001 (12)
C60.0584 (16)0.0771 (18)0.0600 (17)0.0108 (15)−0.0113 (13)−0.0173 (15)
C70.0463 (14)0.0640 (17)0.089 (2)−0.0028 (13)0.0006 (14)−0.0178 (16)
C80.0416 (13)0.0570 (15)0.0723 (17)−0.0018 (11)0.0123 (12)−0.0043 (13)
C90.0317 (11)0.0460 (12)0.0520 (13)0.0060 (9)0.0075 (10)−0.0005 (10)
C100.0360 (11)0.0482 (12)0.0437 (13)0.0096 (10)0.0092 (9)0.0049 (10)
C110.0456 (12)0.0429 (12)0.0396 (12)−0.0009 (10)0.0132 (10)−0.0028 (10)
C120.0357 (11)0.0398 (11)0.0428 (12)0.0008 (9)0.0120 (9)0.0016 (10)
C130.0422 (13)0.0466 (13)0.0544 (14)0.0034 (10)0.0180 (11)0.0101 (11)
C140.0604 (15)0.0434 (13)0.0456 (13)−0.0026 (11)0.0178 (11)−0.0010 (11)
C150.0382 (11)0.0367 (11)0.0382 (11)−0.0005 (9)0.0112 (9)0.0003 (9)
C160.0437 (13)0.0752 (17)0.0599 (15)−0.0102 (12)−0.0005 (11)−0.0039 (13)
C170.0885 (19)0.0551 (15)0.0776 (18)0.0166 (14)0.0492 (15)0.0015 (14)
C180.0476 (14)0.0845 (19)0.0581 (15)−0.0007 (14)−0.0024 (11)−0.0162 (14)
O1—C11.316 (2)C3—C41.481 (3)
O1—H10.98 (3)C4—C51.380 (3)
O2—C11.200 (2)C4—C91.384 (3)
O3—C101.214 (2)C5—C61.386 (4)
O4—C31.210 (2)C5—H50.9300
O5—C131.227 (3)C6—C71.378 (4)
O6—C141.214 (3)C6—H60.9300
N1—C101.391 (3)C7—C81.388 (3)
N1—C31.398 (3)C7—H70.9300
N1—C21.448 (2)C8—C91.385 (3)
N2—C111.337 (3)C8—H80.9300
N2—C121.388 (3)C9—C101.478 (3)
N2—C161.461 (3)C11—H110.9300
N3—C131.404 (3)C12—C151.362 (3)
N3—C141.405 (3)C12—C131.419 (3)
N3—C171.468 (3)C16—H16A0.9600
N4—C151.367 (2)C16—H16B0.9600
N4—C141.374 (3)C16—H16C0.9600
N4—C181.456 (3)C17—H17A0.9600
N5—C111.328 (3)C17—H17B0.9600
N5—C151.360 (2)C17—H17C0.9600
C1—C21.509 (3)C18—H18A0.9600
C2—H2A0.9700C18—H18B0.9600
C2—H2B0.9700C18—H18C0.9600
C1—O1—H1107.9 (17)C7—C8—H8121.7
C10—N1—C3111.45 (17)C4—C9—C8121.6 (2)
C10—N1—C2124.52 (17)C4—C9—C10108.32 (18)
C3—N1—C2123.87 (17)C8—C9—C10130.1 (2)
C11—N2—C12106.23 (16)O3—C10—N1125.0 (2)
C11—N2—C16125.80 (19)O3—C10—C9128.9 (2)
C12—N2—C16127.89 (18)N1—C10—C9106.19 (17)
C13—N3—C14126.66 (18)N5—C11—N2113.31 (18)
C13—N3—C17117.6 (2)N5—C11—H11123.3
C14—N3—C17115.7 (2)N2—C11—H11123.3
C15—N4—C14119.71 (18)C15—C12—N2105.00 (17)
C15—N4—C18121.35 (18)C15—C12—C13122.92 (19)
C14—N4—C18118.94 (19)N2—C12—C13131.95 (19)
C11—N5—C15103.71 (16)O5—C13—N3121.6 (2)
O2—C1—O1124.22 (19)O5—C13—C12126.7 (2)
O2—C1—C2121.44 (19)N3—C13—C12111.71 (18)
O1—C1—C2114.33 (18)O6—C14—N4122.0 (2)
N1—C2—C1114.98 (17)O6—C14—N3121.3 (2)
N1—C2—H2A108.5N4—C14—N3116.71 (19)
C1—C2—H2A108.5N5—C15—C12111.75 (17)
N1—C2—H2B108.5N5—C15—N4125.98 (18)
C1—C2—H2B108.5C12—C15—N4122.25 (18)
H2A—C2—H2B107.5N2—C16—H16A109.5
O4—C3—N1124.1 (2)N2—C16—H16B109.5
O4—C3—C4129.8 (2)H16A—C16—H16B109.5
N1—C3—C4106.10 (17)N2—C16—H16C109.5
C5—C4—C9121.5 (2)H16A—C16—H16C109.5
C5—C4—C3130.5 (2)H16B—C16—H16C109.5
C9—C4—C3107.92 (17)N3—C17—H17A109.5
C4—C5—C6116.9 (2)N3—C17—H17B109.5
C4—C5—H5121.5H17A—C17—H17B109.5
C6—C5—H5121.5N3—C17—H17C109.5
C7—C6—C5121.6 (2)H17A—C17—H17C109.5
C7—C6—H6119.2H17B—C17—H17C109.5
C5—C6—H6119.2N4—C18—H18A109.5
C6—C7—C8121.7 (2)N4—C18—H18B109.5
C6—C7—H7119.2H18A—C18—H18B109.5
C8—C7—H7119.2N4—C18—H18C109.5
C9—C8—C7116.6 (2)H18A—C18—H18C109.5
C9—C8—H8121.7H18B—C18—H18C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···N50.98 (3)1.73 (3)2.707 (2)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N50.98 (3)1.73 (3)2.707 (2)171 (3)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Amino-5-thioxo-4,5-dihydro-1H-1,2,4-triazol-3-ylmeth-yl)isoindoline-1,3-dione.

Authors:  Uzma Yunus; Mohammad Kalim Tahir; Moazzam Hussain Bhatti; Naveeda Yousaf; Madeleine Helliwell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

3.  Synthesis of benzoxazinone derivatives: a new route to 2 (N phthaloylmethyl)-4H-3,1-benzoxazin-4-one.

Authors:  Mehdi Shariat; Sohrab Abdollahi
Journal:  Molecules       Date:  2004-07-31       Impact factor: 4.411

4.  New phthalimide derivatives with potent analgesic activity: II.

Authors:  R Antunes; H Batista; R M Srivastava; G Thomas; C C Araujo
Journal:  Bioorg Med Chem Lett       Date:  1998-11-03       Impact factor: 2.823

  4 in total
  1 in total

1.  Caffeine-N-phthaloyl-β-alanine (1/1).

Authors:  Moazzam H Bhatti; Uzma Yunus; Syed Raza Shah; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26
  1 in total

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