Literature DB >> 22719646

Caffeine-N-phthaloyl-β-alanine (1/1).

Moazzam H Bhatti, Uzma Yunus, Syed Raza Shah, Ulrich Flörke.   

Abstract

The title co-crystal [systematic name: 3-(1,3-dioxoisoindolin-2-yl)propanoic acid-1,3,7-trimethyl-1H-purine-2,6(3H,7H)-dione (1/1)], C(8)H(10)N(4)O(2)·C(11)H(9)NO(4), is the combination of 1:1 adduct of N-phthaloyl-β-alanine with caffeine. The phthalimide and purine rings in the N-phthaloyl-β-alanine and caffeine mol-ecules are essentially planar, with r.m.s. deviations of the fitted atoms of 0.0078 and 0.0118 Å, respectively. In the crystal, the two mol-ecules are linked via an O-H⋯N hydrogen bond involving the intact carb-oxy-lic acid (COOH) group. The crystal structure is consolidated by C-H⋯O inter-actions. The H atoms of a methyl group of the caffeine mol-ecule are disordered over two sets of sites of equal occupancy.

Entities:  

Year:  2012        PMID: 22719646      PMCID: PMC3379448          DOI: 10.1107/S1600536812022696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bhatti et al. (2011 ▶); Feeder & Jones (1996 ▶).

Experimental

Crystal data

C8H10N4O2·C11H9NO4 M = 413.39 Triclinic, a = 8.3411 (17) Å b = 9.0638 (18) Å c = 13.162 (3) Å α = 77.105 (4)° β = 82.394 (4)° γ = 72.865 (4)° V = 924.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 130 K 0.42 × 0.40 × 0.35 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.954, T max = 0.962 8826 measured reflections 4378 independent reflections 3752 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.03 4378 reflections 277 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and local programs. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812022696/pv2544sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022696/pv2544Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812022696/pv2544Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10N4O2·C11H9NO4Z = 2
Mr = 413.39F(000) = 432
Triclinic, P1Dx = 1.485 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.3411 (17) ÅCell parameters from 3614 reflections
b = 9.0638 (18) Åθ = 2.6–28.2°
c = 13.162 (3) ŵ = 0.11 mm1
α = 77.105 (4)°T = 130 K
β = 82.394 (4)°Block, colourless
γ = 72.865 (4)°0.42 × 0.40 × 0.35 mm
V = 924.6 (3) Å3
Bruker SMART APEX diffractometer4378 independent reflections
Radiation source: sealed tube3752 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
φ and ω scansθmax = 27.9°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −10→10
Tmin = 0.954, Tmax = 0.962k = −11→11
8826 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0581P)2 + 0.1919P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4378 reflectionsΔρmax = 0.26 e Å3
277 parametersΔρmin = −0.26 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0023 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.27140 (12)0.71481 (11)0.44923 (7)0.0325 (2)
O20.44166 (11)0.89747 (10)0.70215 (7)0.0269 (2)
O30.39875 (12)0.24964 (10)0.74716 (7)0.0289 (2)
O40.49142 (12)0.38406 (10)0.83878 (7)0.0289 (2)
H40.54510.29350.86730.043*
N10.37128 (13)0.76999 (12)0.58804 (8)0.0228 (2)
C10.28998 (15)0.80945 (15)0.49543 (9)0.0236 (2)
C20.23764 (14)0.98470 (14)0.46992 (9)0.0223 (2)
C30.15355 (15)1.08616 (16)0.38653 (10)0.0273 (3)
H3A0.11711.04800.33460.033*
C40.12468 (15)1.24709 (16)0.38213 (10)0.0290 (3)
H4A0.06701.32010.32610.035*
C50.17853 (15)1.30301 (15)0.45800 (10)0.0279 (3)
H5A0.15731.41330.45260.034*
C60.26336 (15)1.19969 (15)0.54206 (10)0.0247 (3)
H6A0.30061.23720.59410.030*
C70.29048 (14)1.04076 (14)0.54603 (9)0.0215 (2)
C80.37667 (14)0.90240 (14)0.62382 (9)0.0214 (2)
C90.44832 (15)0.61010 (14)0.63967 (10)0.0236 (2)
H9A0.53060.61120.68700.028*
H9B0.50990.54790.58660.028*
C100.31773 (15)0.53188 (14)0.70237 (10)0.0239 (3)
H10A0.24770.59930.75050.029*
H10B0.24310.51890.65440.029*
C110.40448 (14)0.37333 (14)0.76419 (9)0.0219 (2)
O50.05201 (12)−0.05872 (12)0.78890 (7)0.0323 (2)
O60.06764 (11)0.39207 (10)0.88703 (7)0.0292 (2)
N20.28028 (12)0.17054 (11)1.06458 (8)0.0210 (2)
N30.34827 (12)−0.08987 (12)1.07618 (8)0.0211 (2)
N40.19842 (12)−0.08902 (12)0.92895 (8)0.0225 (2)
N50.05480 (12)0.16501 (12)0.84150 (8)0.0246 (2)
C200.27113 (17)0.32244 (15)1.08893 (11)0.0292 (3)
H20A0.32950.30561.15220.044*
H20B0.15300.38041.10040.044*
H20C0.32470.38331.03050.044*
C210.36256 (14)0.02847 (13)1.11659 (9)0.0214 (2)
H21A0.42410.01361.17560.026*
C220.25050 (14)−0.01704 (14)0.99472 (9)0.0196 (2)
C230.25004 (16)−0.26028 (15)0.93844 (10)0.0273 (3)
H23A0.3469−0.29030.88900.041*
H23B0.1567−0.29480.92290.041*
H23C0.2811−0.31051.00980.041*
C240.09971 (14)0.00176 (15)0.84884 (9)0.0239 (3)
C25−0.04962 (17)0.26056 (18)0.75566 (10)0.0330 (3)
H25A−0.08900.37020.76470.050*0.50
H25B−0.14660.22020.75620.050*0.50
H25C0.01720.25490.68880.050*0.50
H25D−0.05670.19330.70850.050*0.50
H25E0.00100.34340.71700.050*0.50
H25F−0.16280.30860.78440.050*0.50
C260.10740 (14)0.24778 (14)0.90378 (9)0.0226 (2)
C270.20625 (14)0.14314 (14)0.98483 (9)0.0206 (2)
U11U22U33U12U13U23
O10.0409 (5)0.0297 (5)0.0309 (5)−0.0097 (4)−0.0096 (4)−0.0099 (4)
O20.0321 (5)0.0264 (5)0.0230 (4)−0.0075 (4)−0.0101 (4)−0.0023 (4)
O30.0373 (5)0.0201 (4)0.0304 (5)−0.0067 (4)−0.0098 (4)−0.0040 (4)
O40.0360 (5)0.0177 (4)0.0330 (5)−0.0036 (4)−0.0161 (4)−0.0018 (4)
N10.0269 (5)0.0189 (5)0.0222 (5)−0.0059 (4)−0.0063 (4)−0.0012 (4)
C10.0247 (6)0.0257 (6)0.0212 (6)−0.0077 (5)−0.0033 (4)−0.0044 (5)
C20.0211 (5)0.0241 (6)0.0208 (6)−0.0060 (4)−0.0021 (4)−0.0022 (5)
C30.0243 (6)0.0344 (7)0.0223 (6)−0.0072 (5)−0.0055 (5)−0.0027 (5)
C40.0223 (6)0.0315 (7)0.0254 (6)−0.0010 (5)−0.0048 (5)0.0036 (5)
C50.0253 (6)0.0218 (6)0.0309 (7)−0.0016 (5)−0.0005 (5)−0.0009 (5)
C60.0256 (6)0.0234 (6)0.0247 (6)−0.0059 (5)−0.0026 (5)−0.0047 (5)
C70.0208 (5)0.0229 (6)0.0189 (5)−0.0050 (4)−0.0022 (4)−0.0011 (4)
C80.0208 (5)0.0220 (6)0.0210 (6)−0.0063 (4)−0.0023 (4)−0.0024 (4)
C90.0241 (6)0.0187 (6)0.0259 (6)−0.0033 (4)−0.0048 (5)−0.0020 (5)
C100.0243 (6)0.0193 (6)0.0270 (6)−0.0047 (4)−0.0064 (5)−0.0015 (5)
C110.0222 (5)0.0199 (6)0.0230 (6)−0.0051 (4)−0.0032 (4)−0.0028 (4)
O50.0318 (5)0.0408 (6)0.0277 (5)−0.0105 (4)−0.0103 (4)−0.0083 (4)
O60.0284 (4)0.0223 (4)0.0298 (5)0.0016 (3)−0.0047 (4)−0.0002 (4)
N20.0210 (5)0.0192 (5)0.0217 (5)−0.0028 (4)−0.0030 (4)−0.0042 (4)
N30.0215 (5)0.0206 (5)0.0202 (5)−0.0040 (4)−0.0048 (4)−0.0022 (4)
N40.0241 (5)0.0229 (5)0.0210 (5)−0.0062 (4)−0.0053 (4)−0.0034 (4)
N50.0220 (5)0.0288 (6)0.0200 (5)−0.0049 (4)−0.0064 (4)0.0009 (4)
C200.0344 (7)0.0211 (6)0.0321 (7)−0.0029 (5)−0.0060 (5)−0.0094 (5)
C210.0206 (5)0.0211 (6)0.0208 (6)−0.0031 (4)−0.0040 (4)−0.0028 (4)
C220.0179 (5)0.0216 (6)0.0185 (5)−0.0052 (4)−0.0016 (4)−0.0024 (4)
C230.0314 (6)0.0225 (6)0.0302 (6)−0.0069 (5)−0.0068 (5)−0.0075 (5)
C240.0202 (5)0.0306 (6)0.0205 (6)−0.0067 (5)−0.0032 (4)−0.0036 (5)
C250.0287 (6)0.0403 (8)0.0237 (6)−0.0041 (6)−0.0105 (5)0.0046 (6)
C260.0180 (5)0.0243 (6)0.0213 (6)−0.0021 (4)−0.0004 (4)−0.0013 (5)
C270.0190 (5)0.0208 (6)0.0208 (6)−0.0036 (4)−0.0025 (4)−0.0032 (4)
O1—C11.2106 (15)O6—C261.2265 (15)
O2—C81.2132 (14)N2—C211.3446 (15)
O3—C111.2066 (15)N2—C271.3867 (15)
O4—C111.3312 (14)N2—C201.4604 (16)
O4—H40.8400N3—C211.3395 (15)
N1—C81.3979 (16)N3—C221.3597 (14)
N1—C11.3982 (15)N4—C221.3719 (15)
N1—C91.4499 (15)N4—C241.3820 (15)
C1—C21.4895 (17)N4—C231.4644 (16)
C2—C31.3841 (16)N5—C241.3994 (17)
C2—C71.3899 (17)N5—C261.4110 (16)
C3—C41.3957 (19)N5—C251.4712 (15)
C3—H3A0.9500C20—H20A0.9800
C4—C51.3910 (19)C20—H20B0.9800
C4—H4A0.9500C20—H20C0.9800
C5—C61.3986 (17)C21—H21A0.9500
C5—H5A0.9500C22—C271.3689 (16)
C6—C71.3807 (17)C23—H23A0.9800
C6—H6A0.9500C23—H23B0.9800
C7—C81.4927 (16)C23—H23C0.9800
C9—C101.5252 (17)C25—H25A0.9800
C9—H9A0.9900C25—H25B0.9800
C9—H9B0.9900C25—H25C0.9800
C10—C111.5073 (16)C25—H25D0.9800
C10—H10A0.9900C25—H25E0.9800
C10—H10B0.9900C25—H25F0.9800
O5—C241.2190 (15)C26—C271.4275 (16)
C11—O4—H4109.5C21—N3—C22104.19 (10)
C8—N1—C1112.53 (10)C22—N4—C24119.59 (10)
C8—N1—C9123.16 (10)C22—N4—C23121.80 (10)
C1—N1—C9124.26 (10)C24—N4—C23118.57 (10)
O1—C1—N1124.51 (12)C24—N5—C26126.81 (10)
O1—C1—C2130.13 (11)C24—N5—C25116.45 (10)
N1—C1—C2105.36 (10)C26—N5—C25116.62 (11)
C3—C2—C7121.42 (12)N2—C20—H20A109.5
C3—C2—C1130.01 (11)N2—C20—H20B109.5
C7—C2—C1108.56 (10)H20A—C20—H20B109.5
C2—C3—C4117.05 (12)N2—C20—H20C109.5
C2—C3—H3A121.5H20A—C20—H20C109.5
C4—C3—H3A121.5H20B—C20—H20C109.5
C5—C4—C3121.47 (11)N3—C21—N2112.65 (10)
C5—C4—H4A119.3N3—C21—H21A123.7
C3—C4—H4A119.3N2—C21—H21A123.7
C4—C5—C6121.12 (12)N3—C22—C27111.37 (10)
C4—C5—H5A119.4N3—C22—N4126.43 (11)
C6—C5—H5A119.4C27—C22—N4122.20 (10)
C7—C6—C5116.97 (11)N4—C23—H23A109.5
C7—C6—H6A121.5N4—C23—H23B109.5
C5—C6—H6A121.5H23A—C23—H23B109.5
C6—C7—C2121.96 (11)N4—C23—H23C109.5
C6—C7—C8130.04 (11)H23A—C23—H23C109.5
C2—C7—C8107.99 (10)H23B—C23—H23C109.5
O2—C8—N1124.43 (11)O5—C24—N4121.12 (12)
O2—C8—C7130.01 (11)O5—C24—N5121.97 (11)
N1—C8—C7105.56 (10)N4—C24—N5116.90 (10)
N1—C9—C10111.68 (10)N5—C25—H25A109.5
N1—C9—H9A109.3N5—C25—H25B109.5
C10—C9—H9A109.3H25A—C25—H25B109.5
N1—C9—H9B109.3N5—C25—H25C109.5
C10—C9—H9B109.3H25A—C25—H25C109.5
H9A—C9—H9B107.9H25B—C25—H25C109.5
C11—C10—C9109.85 (10)N5—C25—H25D109.5
C11—C10—H10A109.7N5—C25—H25E109.5
C9—C10—H10A109.7H25D—C25—H25E109.5
C11—C10—H10B109.7N5—C25—H25F109.5
C9—C10—H10B109.7H25D—C25—H25F109.5
H10A—C10—H10B108.2H25E—C25—H25F109.5
O3—C11—O4123.34 (11)O6—C26—N5121.50 (11)
O3—C11—C10124.00 (11)O6—C26—C27126.91 (12)
O4—C11—C10112.64 (10)N5—C26—C27111.59 (10)
C21—N2—C27106.39 (10)C22—C27—N2105.40 (10)
C21—N2—C20126.14 (10)C22—C27—C26122.76 (11)
C27—N2—C20127.47 (10)N2—C27—C26131.82 (11)
C8—N1—C1—O1179.26 (12)C27—N2—C21—N30.32 (13)
C9—N1—C1—O11.75 (19)C20—N2—C21—N3179.91 (11)
C8—N1—C1—C2−0.27 (13)C21—N3—C22—C270.33 (13)
C9—N1—C1—C2−177.79 (10)C21—N3—C22—N4−179.28 (11)
O1—C1—C2—C30.1 (2)C24—N4—C22—N3−179.58 (11)
N1—C1—C2—C3179.57 (12)C23—N4—C22—N3−2.06 (18)
O1—C1—C2—C7−178.84 (13)C24—N4—C22—C270.86 (17)
N1—C1—C2—C70.66 (13)C23—N4—C22—C27178.37 (11)
C7—C2—C3—C40.19 (18)C22—N4—C24—O5179.72 (11)
C1—C2—C3—C4−178.61 (12)C23—N4—C24—O52.12 (18)
C2—C3—C4—C50.21 (19)C22—N4—C24—N5−1.58 (16)
C3—C4—C5—C6−0.25 (19)C23—N4—C24—N5−179.18 (10)
C4—C5—C6—C7−0.11 (18)C26—N5—C24—O5−177.48 (11)
C5—C6—C7—C20.51 (18)C25—N5—C24—O5−1.59 (17)
C5—C6—C7—C8179.56 (12)C26—N5—C24—N43.83 (18)
C3—C2—C7—C6−0.57 (18)C25—N5—C24—N4179.72 (10)
C1—C2—C7—C6178.46 (11)C24—N5—C26—O6175.97 (11)
C3—C2—C7—C8−179.80 (11)C25—N5—C26—O60.09 (17)
C1—C2—C7—C8−0.77 (13)C24—N5—C26—C27−4.66 (16)
C1—N1—C8—O2−179.50 (11)C25—N5—C26—C27179.45 (10)
C9—N1—C8—O2−1.95 (18)N3—C22—C27—N2−0.15 (13)
C1—N1—C8—C7−0.18 (13)N4—C22—C27—N2179.47 (10)
C9—N1—C8—C7177.36 (10)N3—C22—C27—C26178.33 (10)
C6—C7—C8—O20.7 (2)N4—C22—C27—C26−2.04 (18)
C2—C7—C8—O2179.86 (12)C21—N2—C27—C22−0.09 (12)
C6—C7—C8—N1−178.55 (12)C20—N2—C27—C22−179.68 (11)
C2—C7—C8—N10.60 (13)C21—N2—C27—C26−178.38 (12)
C8—N1—C9—C10103.65 (13)C20—N2—C27—C262.0 (2)
C1—N1—C9—C10−79.09 (14)O6—C26—C27—C22−177.07 (11)
N1—C9—C10—C11−173.66 (10)N5—C26—C27—C223.61 (16)
C9—C10—C11—O3−112.03 (13)O6—C26—C27—N21.0 (2)
C9—C10—C11—O466.73 (13)N5—C26—C27—N2−178.35 (11)
C22—N3—C21—N2−0.40 (13)
D—H···AD—HH···AD···AD—H···A
O4—H4···N3i0.841.832.6672 (13)175
C3—H3A···O5ii0.952.263.1447 (16)155
C6—H6A···O3iii0.952.313.2283 (16)162
C20—H20B···O6iv0.982.353.2559 (16)154
C25—H25A···O60.982.282.7244 (18)107
C25—H25D···O50.982.262.7152 (19)107
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯N3i0.841.832.6672 (13)175
C3—H3A⋯O5ii0.952.263.1447 (16)155
C6—H6A⋯O3iii0.952.313.2283 (16)162
C20—H20B⋯O6iv0.982.353.2559 (16)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The 1:1 adduct of caffeine and 2-(1,3-dioxoisoindolin-2-yl)acetic acid.

Authors:  Moazzam H Bhatti; Uzma Yunus; Sohail Saeed; Syed Raza Shah; Wing-Tak Wong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-02
  2 in total

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