Literature DB >> 22590265

1-(3,5-Dimeth-oxy-benz-yl)-1H-pyrrole.

Yueqing Li1, Xu Zhang, Shiyong Huo, Wei Huang, Weijie Zhao.   

Abstract

The title compound, C(13)H(15)NO(2), was synthesized from 3,5-dimeth-oxy-benzaldehyde. The dihedral angle between the pyrrole and benzene rings is 89.91 (5)°. In the crystal, weak C-H⋯O and C-H⋯π interactions link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22590265      PMCID: PMC3344503          DOI: 10.1107/S1600536812015024

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-HIV-1 activity of N-(aryl­meth­yl)-pyrrole, see: Liu et al. (2008 ▶); Teixeira et al. (2008 ▶). For a related structure, see: Wang et al. (2011 ▶). For the synthesis of 3,5-dimeth­oxy-benzyl­amine, see: Yraola et al. (2006 ▶).

Experimental

Crystal data

C13H15NO2 M = 217.26 Monoclinic, a = 9.7569 (11) Å b = 12.2303 (10) Å c = 10.4181 (10) Å β = 113.720 (7)° V = 1138.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 153 K 0.21 × 0.21 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer 7643 measured reflections 2230 independent reflections 1717 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.140 S = 0.99 2230 reflections 145 parameters H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015024/rk2345sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015024/rk2345Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015024/rk2345Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO2F(000) = 464
Mr = 217.26Dx = 1.268 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2351 reflections
a = 9.7569 (11) Åθ = 2.8–26.0°
b = 12.2303 (10) ŵ = 0.09 mm1
c = 10.4181 (10) ÅT = 153 K
β = 113.720 (7)°Needle, colorless
V = 1138.2 (2) Å30.21 × 0.21 × 0.16 mm
Z = 4
Bruker APEXII CCD diffractometer1717 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
Graphite monochromatorθmax = 26.0°, θmin = 2.7°
φ and ω scansh = −12→8
7643 measured reflectionsk = −15→15
2230 independent reflectionsl = −11→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
2230 reflections(Δ/σ)max = 0.014
145 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.14877 (13)0.21993 (9)0.87889 (11)0.0396 (3)
O10.13871 (14)0.44438 (8)0.47582 (11)0.0572 (4)
O20.08702 (13)0.07035 (8)0.30839 (10)0.0536 (3)
C110.13905 (15)0.11206 (11)0.54195 (14)0.0397 (4)
H11A0.14070.03730.55910.048*
C70.16360 (16)0.29689 (11)0.62375 (14)0.0407 (4)
H7A0.18140.34690.69590.049*
C90.10819 (16)0.26083 (11)0.37960 (14)0.0384 (4)
H9A0.08840.28580.28950.046*
C50.19169 (18)0.14323 (12)0.79460 (15)0.0478 (4)
H5A0.13580.07590.78500.057*
H5B0.29710.12610.84370.057*
C80.13589 (16)0.33349 (11)0.48959 (14)0.0394 (4)
C100.11093 (15)0.14936 (10)0.40823 (14)0.0381 (4)
C10.24214 (17)0.29419 (12)0.96984 (15)0.0455 (4)
H1A0.34530.29800.99770.055*
C60.16472 (15)0.18558 (11)0.65030 (14)0.0380 (4)
C120.0972 (2)0.48874 (13)0.33928 (16)0.0573 (5)
H12A0.10150.56710.34480.086*
H12B−0.00280.46620.28080.086*
H12C0.16500.46290.30000.086*
C40.00631 (16)0.24161 (13)0.86324 (15)0.0475 (4)
H4A−0.07880.20350.80590.057*
C20.15797 (19)0.36182 (13)1.01276 (16)0.0514 (4)
H2A0.19320.41971.07540.062*
C30.00937 (18)0.32851 (14)0.94572 (16)0.0528 (4)
H3A−0.07260.35990.95560.063*
C130.0520 (2)0.10539 (13)0.16790 (15)0.0537 (4)
H13A0.03600.04270.10820.081*
H13B0.13360.14780.16510.081*
H13C−0.03700.14930.13590.081*
U11U22U33U12U13U23
N0.0424 (7)0.0461 (7)0.0284 (6)−0.0016 (5)0.0122 (5)0.0034 (5)
O10.0951 (9)0.0343 (6)0.0415 (6)−0.0005 (5)0.0266 (6)0.0034 (4)
O20.0836 (8)0.0395 (6)0.0364 (6)−0.0022 (5)0.0230 (6)−0.0046 (4)
C110.0453 (8)0.0327 (7)0.0388 (8)0.0017 (6)0.0146 (7)0.0029 (6)
C70.0502 (9)0.0380 (8)0.0321 (8)−0.0007 (6)0.0146 (6)−0.0032 (6)
C90.0433 (8)0.0409 (8)0.0304 (7)0.0010 (6)0.0142 (6)0.0035 (6)
C50.0616 (10)0.0434 (8)0.0366 (8)0.0042 (7)0.0180 (7)0.0038 (6)
C80.0473 (8)0.0329 (7)0.0387 (8)0.0005 (6)0.0180 (6)0.0012 (6)
C100.0433 (8)0.0362 (7)0.0343 (7)0.0005 (6)0.0150 (6)−0.0028 (6)
C10.0442 (8)0.0564 (9)0.0331 (8)−0.0090 (7)0.0126 (6)0.0010 (7)
C60.0401 (8)0.0393 (8)0.0326 (7)0.0021 (6)0.0126 (6)0.0025 (6)
C120.0857 (12)0.0398 (8)0.0516 (10)0.0030 (8)0.0332 (9)0.0121 (7)
C40.0390 (8)0.0630 (10)0.0367 (8)−0.0048 (7)0.0114 (7)0.0107 (7)
C20.0703 (11)0.0494 (9)0.0366 (8)−0.0056 (8)0.0237 (8)−0.0016 (7)
C30.0556 (10)0.0625 (10)0.0472 (9)0.0140 (8)0.0278 (8)0.0130 (8)
C130.0745 (11)0.0525 (9)0.0329 (8)−0.0035 (8)0.0203 (8)−0.0068 (7)
N—C41.3589 (19)C5—C61.5097 (19)
N—C11.3631 (18)C5—H5A0.9700
N—C51.4568 (18)C5—H5B0.9700
O1—C81.3652 (16)C1—C21.362 (2)
O1—C121.4207 (17)C1—H1A0.9300
O2—C101.3693 (16)C12—H12A0.9600
O2—C131.4284 (17)C12—H12B0.9600
C11—C61.3849 (19)C12—H12C0.9600
C11—C101.3845 (19)C4—C31.359 (2)
C11—H11A0.9300C4—H4A0.9300
C7—C61.3883 (19)C2—C31.393 (2)
C7—C81.3868 (19)C2—H2A0.9300
C7—H7A0.9300C3—H3A0.9300
C9—C81.3880 (19)C13—H13A0.9600
C9—C101.3934 (19)C13—H13B0.9600
C9—H9A0.9300C13—H13C0.9600
C4—N—C1108.58 (13)C2—C1—H1A126.0
C4—N—C5125.56 (13)N—C1—H1A126.0
C1—N—C5125.05 (13)C11—C6—C7119.33 (13)
C8—O1—C12118.35 (12)C11—C6—C5119.39 (12)
C10—O2—C13117.65 (11)C7—C6—C5121.27 (13)
C6—C11—C10120.26 (12)O1—C12—H12A109.5
C6—C11—H11A119.9O1—C12—H12B109.5
C10—C11—H11A119.9H12A—C12—H12B109.5
C6—C7—C8120.00 (13)O1—C12—H12C109.5
C6—C7—H7A120.0H12A—C12—H12C109.5
C8—C7—H7A120.0H12B—C12—H12C109.5
C8—C9—C10117.98 (12)N—C4—C3108.38 (13)
C8—C9—H9A121.0N—C4—H4A125.8
C10—C9—H9A121.0C3—C4—H4A125.8
N—C5—C6113.71 (12)C1—C2—C3107.53 (15)
N—C5—H5A108.8C1—C2—H2A126.2
C6—C5—H5A108.8C3—C2—H2A126.2
N—C5—H5B108.8C4—C3—C2107.42 (14)
C6—C5—H5B108.8C4—C3—H3A126.3
H5A—C5—H5B107.7C2—C3—H3A126.3
O1—C8—C7115.00 (13)O2—C13—H13A109.5
O1—C8—C9123.69 (13)O2—C13—H13B109.5
C7—C8—C9121.31 (13)H13A—C13—H13B109.5
O2—C10—C11115.85 (12)O2—C13—H13C109.5
O2—C10—C9123.04 (12)H13A—C13—H13C109.5
C11—C10—C9121.11 (13)H13B—C13—H13C109.5
C2—C1—N108.07 (14)
D—H···AD—HH···AD···AD—H···A
C1—H1A···Cgi0.932.793.6935 (19)165
C2—H2A···O2ii0.932.723.527 (2)146
C5—H5A···O2iii0.972.683.609 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C6–C11 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1ACgi0.932.793.694 (2)165
C2—H2A⋯O2ii0.932.723.527 (2)146
C5—H5A⋯O2iii0.972.683.609 (2)161

Symmetry codes: (i) ; (ii) ; (iii) .

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