Literature DB >> 22058897

Bis(μ(2)-pyridine-2-carboxamide oximato)bis-[(pyridine-2-carboxamide oxime)zinc] dinitrate.

Xiao-Hui Deng, Jing-Wen Ran.   

Abstract

In the title dinuclear compound, [Zn(2)(C(6)H(6)N(3)O)(2)(C(6)H(7)N(3)O)(2)](NO(3))(2), the Zn(II) cation is N,N'-chelated by one pyridine-2-carboxamide oximate anion and one pyridine-2-carboxamide oxime mol-ecule, and is further bridged by an oxime O atom from the adjacent pyridine-2-carboxamide oximate anion, forming a distorted trigonal bipyramidal coordination. Two pyridine-2-carboxamide oximate anions bridge two Zn(II) cations to form the centrosymmetric dinuclear mol-ecule. Extensive O-H⋯O, N-H⋯O and O-H⋯N hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2011        PMID: 22058897      PMCID: PMC3200762          DOI: 10.1107/S1600536811034908

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar metal complexes, see: Papatriantafyllopoulou et al. (2008 ▶); Stamatatos et al. (2006a ▶,b ▶). For the synthesis of the ligand, see: Bernasek (1957 ▶).

Experimental

Crystal data

[Zn2(C6H6N3O)2(C6H7N3O)2](NO3)2 M = 801.33 Monoclinic, a = 7.4125 (14) Å b = 22.201 (4) Å c = 9.4225 (17) Å β = 106.794 (2)° V = 1484.5 (5) Å3 Z = 2 Mo Kα radiation μ = 1.70 mm−1 T = 293 K 0.51 × 0.48 × 0.39 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.478, T max = 0.557 8302 measured reflections 2632 independent reflections 2297 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.117 S = 1.03 2632 reflections 209 parameters H-atom parameters constrained Δρmax = 1.43 e Å−3 Δρmin = −0.97 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811034908/xu5304sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811034908/xu5304Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C6H6N3O)2(C6H7N3O)2](NO3)2F(000) = 816
Mr = 801.33Dx = 1.793 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2632 reflections
a = 7.4125 (14) Åθ = 1.8–25.1°
b = 22.201 (4) ŵ = 1.70 mm1
c = 9.4225 (17) ÅT = 293 K
β = 106.794 (2)°Block, yellow
V = 1484.5 (5) Å30.51 × 0.48 × 0.39 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer2632 independent reflections
Radiation source: fine-focus sealed tube2297 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 25.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→6
Tmin = 0.478, Tmax = 0.557k = −26→26
8302 measured reflectionsl = −9→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0547P)2 + 4.2299P] where P = (Fo2 + 2Fc2)/3
2632 reflections(Δ/σ)max = 0.001
209 parametersΔρmax = 1.43 e Å3
0 restraintsΔρmin = −0.97 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.46944 (6)0.437379 (19)0.86499 (5)0.02829 (17)
O20.3307 (4)0.44030 (11)1.0158 (3)0.0305 (6)
N60.5478 (4)0.52822 (14)0.8642 (3)0.0279 (7)
O10.8933 (4)0.45773 (13)1.0281 (4)0.0412 (7)
H10.84980.49191.02080.062*
C120.4742 (5)0.55977 (16)0.7481 (4)0.0290 (8)
N30.7493 (5)0.41671 (15)0.9631 (4)0.0326 (7)
C110.3546 (5)0.52544 (17)0.6194 (4)0.0302 (8)
N10.4877 (5)0.34274 (15)0.8238 (4)0.0321 (7)
N40.3239 (5)0.46677 (15)0.6470 (4)0.0311 (7)
N50.5021 (6)0.61900 (15)0.7361 (4)0.0465 (10)
H5A0.57390.63850.80990.056*
H5B0.44820.63750.65470.056*
N70.6922 (6)0.77875 (19)0.9401 (5)0.0590 (5)
N20.9964 (5)0.35112 (17)0.9759 (4)0.0429 (9)
H2A1.07970.37781.01610.051*
H2B1.03090.31560.95830.051*
C50.6647 (5)0.32001 (17)0.8733 (4)0.0298 (8)
C80.1400 (7)0.4564 (2)0.3942 (5)0.0431 (11)
H80.06650.43210.31940.052*
C100.2807 (6)0.55061 (19)0.4812 (5)0.0383 (10)
H100.30380.59080.46470.046*
C60.8138 (5)0.36488 (17)0.9409 (4)0.0298 (8)
O50.8612 (5)0.78443 (16)1.0109 (4)0.0590 (5)
O30.5941 (5)0.82406 (15)0.9079 (4)0.0590 (5)
O40.6244 (5)0.72889 (15)0.9025 (4)0.0590 (5)
C70.2194 (7)0.43374 (19)0.5347 (5)0.0406 (10)
H70.19920.39340.55200.049*
C40.7013 (7)0.25955 (19)0.8636 (5)0.0402 (10)
H40.82370.24490.89870.048*
C30.5540 (7)0.22116 (19)0.8011 (5)0.0462 (11)
H30.57620.18030.79220.055*
C90.1715 (6)0.5154 (2)0.3668 (5)0.0431 (11)
H90.12030.53170.27290.052*
C10.3466 (6)0.30447 (19)0.7682 (5)0.0380 (10)
H1A0.22420.31940.73890.046*
C20.3739 (7)0.2436 (2)0.7522 (5)0.0428 (11)
H20.27270.21840.70920.051*
U11U22U33U12U13U23
Zn10.0276 (3)0.0250 (3)0.0300 (3)0.00004 (17)0.00468 (19)−0.00044 (17)
O20.0287 (14)0.0296 (14)0.0315 (14)−0.0055 (11)0.0062 (12)−0.0041 (11)
N60.0281 (16)0.0260 (16)0.0276 (17)−0.0017 (13)0.0049 (13)−0.0021 (13)
O10.0293 (15)0.0309 (15)0.0560 (19)−0.0054 (12)0.0003 (14)−0.0053 (14)
C120.030 (2)0.0242 (18)0.033 (2)0.0029 (15)0.0079 (17)−0.0004 (15)
N30.0253 (17)0.0295 (17)0.0394 (19)−0.0038 (14)0.0039 (14)−0.0009 (14)
C110.029 (2)0.0298 (19)0.032 (2)0.0051 (16)0.0094 (16)0.0001 (16)
N10.0302 (17)0.0287 (17)0.0348 (18)−0.0006 (14)0.0053 (14)−0.0003 (14)
N40.0341 (18)0.0279 (16)0.0286 (17)0.0006 (14)0.0048 (14)−0.0003 (13)
N50.061 (3)0.0255 (18)0.042 (2)−0.0020 (17)−0.0027 (19)0.0038 (15)
N70.0512 (11)0.0453 (9)0.0727 (13)−0.0021 (8)0.0056 (9)−0.0090 (9)
N20.0279 (18)0.0374 (19)0.059 (2)0.0032 (15)0.0050 (17)−0.0044 (17)
C50.033 (2)0.0289 (19)0.029 (2)0.0016 (16)0.0098 (16)0.0010 (16)
C80.045 (3)0.046 (3)0.033 (2)−0.002 (2)0.0034 (19)−0.0070 (19)
C100.043 (2)0.035 (2)0.037 (2)0.0052 (18)0.0099 (19)0.0056 (18)
C60.029 (2)0.030 (2)0.029 (2)0.0030 (16)0.0057 (16)0.0052 (16)
O50.0512 (11)0.0453 (9)0.0727 (13)−0.0021 (8)0.0056 (9)−0.0090 (9)
O30.0512 (11)0.0453 (9)0.0727 (13)−0.0021 (8)0.0056 (9)−0.0090 (9)
O40.0512 (11)0.0453 (9)0.0727 (13)−0.0021 (8)0.0056 (9)−0.0090 (9)
C70.046 (3)0.032 (2)0.037 (2)−0.0053 (18)0.002 (2)−0.0044 (18)
C40.044 (2)0.033 (2)0.043 (3)0.0053 (18)0.011 (2)0.0009 (18)
C30.061 (3)0.028 (2)0.048 (3)0.000 (2)0.013 (2)−0.0053 (19)
C90.043 (3)0.051 (3)0.032 (2)0.006 (2)0.0056 (19)0.0050 (19)
C10.035 (2)0.038 (2)0.038 (2)−0.0052 (18)0.0059 (18)0.0014 (18)
C20.050 (3)0.039 (2)0.038 (2)−0.015 (2)0.010 (2)−0.0048 (19)
Zn1—O21.981 (3)N7—O41.225 (5)
Zn1—N12.148 (3)N7—O51.244 (5)
Zn1—N32.064 (3)N2—C61.333 (5)
Zn1—N42.128 (3)N2—H2A0.8600
Zn1—N62.099 (3)N2—H2B0.8600
O2—N6i1.411 (4)C5—C41.378 (6)
N6—C121.281 (5)C5—C61.487 (5)
N6—O2i1.411 (4)C8—C91.368 (7)
O1—N31.402 (4)C8—C71.379 (6)
O1—H10.8200C8—H80.9300
C12—N51.341 (5)C10—C91.386 (6)
C12—C111.489 (5)C10—H100.9300
N3—C61.286 (5)C7—H70.9300
C11—N41.361 (5)C4—C31.376 (6)
C11—C101.377 (6)C4—H40.9300
N1—C11.332 (5)C3—C21.374 (7)
N1—C51.357 (5)C3—H30.9300
N4—C71.336 (5)C9—H90.9300
N5—H5A0.8600C1—C21.381 (6)
N5—H5B0.8600C1—H1A0.9300
N7—O31.227 (5)C2—H20.9300
O2—Zn1—N3110.42 (13)O4—N7—O5120.8 (4)
O2—Zn1—N699.93 (12)C6—N2—H2A120.0
N3—Zn1—N688.39 (13)C6—N2—H2B120.0
O2—Zn1—N4117.30 (12)H2A—N2—H2B120.0
N3—Zn1—N4131.62 (14)N1—C5—C4121.9 (4)
N6—Zn1—N476.45 (12)N1—C5—C6115.0 (3)
O2—Zn1—N1103.55 (12)C4—C5—C6123.0 (4)
N3—Zn1—N175.87 (13)C9—C8—C7118.8 (4)
N6—Zn1—N1155.12 (13)C9—C8—H8120.6
N4—Zn1—N199.58 (13)C7—C8—H8120.6
N6i—O2—Zn1104.3 (2)C9—C10—C11119.3 (4)
C12—N6—O2i115.4 (3)C9—C10—H10120.3
C12—N6—Zn1118.6 (3)C11—C10—H10120.3
O2i—N6—Zn1125.9 (2)N3—C6—N2124.3 (4)
N3—O1—H1109.5N3—C6—C5113.8 (3)
N6—C12—N5124.8 (4)N2—C6—C5121.9 (4)
N6—C12—C11115.0 (3)N4—C7—C8123.3 (4)
N5—C12—C11120.2 (4)N4—C7—H7118.3
C6—N3—O1112.4 (3)C8—C7—H7118.3
C6—N3—Zn1119.9 (3)C5—C4—C3119.0 (4)
O1—N3—Zn1126.2 (2)C5—C4—H4120.5
N4—C11—C10121.8 (4)C3—C4—H4120.5
N4—C11—C12115.3 (3)C2—C3—C4119.5 (4)
C10—C11—C12122.9 (4)C2—C3—H3120.2
C1—N1—C5118.0 (3)C4—C3—H3120.2
C1—N1—Zn1127.7 (3)C8—C9—C10119.1 (4)
C5—N1—Zn1114.0 (2)C8—C9—H9120.4
C7—N4—C11117.7 (3)C10—C9—H9120.4
C7—N4—Zn1127.8 (3)N1—C1—C2123.0 (4)
C11—N4—Zn1114.3 (2)N1—C1—H1A118.5
C12—N5—H5A120.0C2—C1—H1A118.5
C12—N5—H5B120.0C3—C2—C1118.5 (4)
H5A—N5—H5B120.0C3—C2—H2120.8
O3—N7—O4120.3 (4)C1—C2—H2120.8
O3—N7—O5118.9 (4)
N3—Zn1—O2—N6i43.2 (2)C12—C11—N4—C7−179.2 (4)
N6—Zn1—O2—N6i−48.8 (2)C10—C11—N4—Zn1175.9 (3)
N4—Zn1—O2—N6i−128.6 (2)C12—C11—N4—Zn1−3.6 (4)
N1—Zn1—O2—N6i123.0 (2)O2—Zn1—N4—C7−90.2 (4)
O2—Zn1—N6—C12−112.5 (3)N3—Zn1—N4—C7100.1 (4)
N3—Zn1—N6—C12137.0 (3)N6—Zn1—N4—C7175.4 (4)
N4—Zn1—N6—C123.4 (3)N1—Zn1—N4—C720.5 (4)
N1—Zn1—N6—C1286.9 (4)O2—Zn1—N4—C1194.8 (3)
O2—Zn1—N6—O2i64.1 (3)N3—Zn1—N4—C11−74.9 (3)
N3—Zn1—N6—O2i−46.3 (3)N6—Zn1—N4—C110.4 (3)
N4—Zn1—N6—O2i−180.0 (3)N1—Zn1—N4—C11−154.5 (3)
N1—Zn1—N6—O2i−96.5 (4)C1—N1—C5—C41.8 (6)
O2i—N6—C12—N5−1.5 (6)Zn1—N1—C5—C4176.4 (3)
Zn1—N6—C12—N5175.5 (3)C1—N1—C5—C6−177.0 (4)
O2i—N6—C12—C11176.8 (3)Zn1—N1—C5—C6−2.4 (4)
Zn1—N6—C12—C11−6.3 (5)N4—C11—C10—C90.2 (7)
O2—Zn1—N3—C6109.2 (3)C12—C11—C10—C9179.6 (4)
N6—Zn1—N3—C6−150.8 (3)O1—N3—C6—N20.3 (6)
N4—Zn1—N3—C6−80.6 (3)Zn1—N3—C6—N2167.2 (3)
N1—Zn1—N3—C69.7 (3)O1—N3—C6—C5179.5 (3)
O2—Zn1—N3—O1−86.0 (3)Zn1—N3—C6—C5−13.7 (5)
N6—Zn1—N3—O114.0 (3)N1—C5—C6—N310.2 (5)
N4—Zn1—N3—O184.3 (3)C4—C5—C6—N3−168.6 (4)
N1—Zn1—N3—O1174.6 (3)N1—C5—C6—N2−170.7 (4)
N6—C12—C11—N46.5 (5)C4—C5—C6—N210.6 (6)
N5—C12—C11—N4−175.1 (4)C11—N4—C7—C8−1.0 (7)
N6—C12—C11—C10−173.0 (4)Zn1—N4—C7—C8−175.8 (4)
N5—C12—C11—C105.4 (6)C9—C8—C7—N41.1 (8)
O2—Zn1—N1—C162.8 (4)N1—C5—C4—C30.4 (7)
N3—Zn1—N1—C1170.8 (4)C6—C5—C4—C3179.0 (4)
N6—Zn1—N1—C1−136.9 (4)C5—C4—C3—C2−1.1 (7)
N4—Zn1—N1—C1−58.5 (4)C7—C8—C9—C10−0.5 (7)
O2—Zn1—N1—C5−111.2 (3)C11—C10—C9—C8−0.1 (7)
N3—Zn1—N1—C5−3.2 (3)C5—N1—C1—C2−3.3 (6)
N6—Zn1—N1—C549.1 (5)Zn1—N1—C1—C2−177.1 (3)
N4—Zn1—N1—C5127.5 (3)C4—C3—C2—C1−0.4 (7)
C10—C11—N4—C70.3 (6)N1—C1—C2—C32.6 (7)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.982.767 (4)162.
O1—H1···N60.822.433.018 (4)129.
N2—H2A···O2ii0.862.323.108 (5)152.
N2—H2B···O5iii0.862.353.180 (5)162.
N5—H5A···O40.862.182.900 (5)142.
N5—H5B···O5iv0.862.182.985 (5)156.
Table 1

Selected bond lengths (Å)

Zn1—O21.981 (3)
Zn1—N12.148 (3)
Zn1—N32.064 (3)
Zn1—N42.128 (3)
Zn1—N62.099 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.982.767 (4)162
O1—H1⋯N60.822.433.018 (4)129
N2—H2A⋯O2ii0.862.323.108 (5)152
N2—H2B⋯O5iii0.862.353.180 (5)162
N5—H5A⋯O40.862.182.900 (5)142
N5—H5B⋯O5iv0.862.182.985 (5)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Using pyridine amidoximes in 3d-metal cluster chemistry: a novel ferromagnetic Ni12 complex from the use of pyridine-2-amidoxime.

Authors:  Constantina Papatriantafyllopoulou; Leigh F Jones; Tuyen D Nguyen; Nuria Matamoros-Salvador; Luís Cunha-Silva; Filipe A Almeida Paz; João Rocha; Marco Evangelisti; Euan K Brechin; Spyros P Perlepes
Journal:  Dalton Trans       Date:  2008-04-16       Impact factor: 4.390

  2 in total
  1 in total

1.  Bis[μ(3)-N'-oxidopyridine-2-carbox-imidamidato(2-)]bis-[μ(2)-N'-oxido-pyridine-2-carboximidamidato(1-)]tetra-pyridine-tetra-nickel(II) dinitrate.

Authors:  Xiao-Hui Deng; Jing-Wen Ran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  1 in total

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