Literature DB >> 22058838

trans-Diaqua-bis-[5-carb-oxy-2-(3-pyrid-yl)-1H-imidazole-4-carboxyl-ato-κN,O]cobalt(II).

Qing-Guang Zhan1.   

Abstract

In the title complex, [Co(C(10)H(6)N(3)O(4))(2)(H(2)O)(2)], the Co(II) atom is located on an inversion centre and displays a distorted octa-hedral coordination geometry defined by two N,O-bidentate ligands in the equatorial plane and two water mol-ecules in the axial positions. The conformation is stabilized by intra-molecular O-H⋯O hydrogen bonds. Inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into chains, which are further connected by inter-molecular O-H⋯O and O-H⋯N hydrogen-bonding inter-actions, forming a two-dimensional supra-molecular network parallel to (110).

Entities:  

Year:  2011        PMID: 22058838      PMCID: PMC3200953          DOI: 10.1107/S1600536811029618

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the design and synthesis of coordination polymers based on 1H-imidazole-4,5-dicarb­oxy­lic acid, see: Gu et al. (2010 ▶); Wang et al. (2010 ▶). For related complexes with 5-carb­oxy-2-(3-pyrid­yl)-1H-imidazole-4-carboxyl­ate, see: Chen (2008 ▶); Liu et al. (2009 ▶); Jing et al. (2010 ▶, 2011 ▶); Zhou et al. (2011 ▶).

Experimental

Crystal data

[Co(C10H6N3O4)2(H2O)2] M = 559.32 Triclinic, a = 7.0240 (9) Å b = 8.8770 (12) Å c = 9.3240 (12) Å α = 81.598 (2)° β = 83.290 (2)° γ = 67.755 (2)° V = 531.12 (12) Å3 Z = 1 Mo Kα radiation μ = 0.88 mm−1 T = 298 K 0.32 × 0.28 × 0.26 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.765, T max = 0.803 2936 measured reflections 2052 independent reflections 1589 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.104 S = 1.06 2052 reflections 170 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811029618/rz2627sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811029618/rz2627Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C10H6N3O4)2(H2O)2]Z = 1
Mr = 559.32F(000) = 285
Triclinic, P1Dx = 1.749 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.0240 (9) ÅCell parameters from 860 reflections
b = 8.8770 (12) Åθ = 2.2–24.9°
c = 9.3240 (12) ŵ = 0.88 mm1
α = 81.598 (2)°T = 298 K
β = 83.290 (2)°Block, brown
γ = 67.755 (2)°0.32 × 0.28 × 0.26 mm
V = 531.12 (12) Å3
Bruker SMART APEXII CCD area-detector diffractometer2052 independent reflections
Radiation source: fine-focus sealed tube1589 reflections with I > 2σ(I)
graphiteRint = 0.017
phi and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.765, Tmax = 0.803k = −10→6
2936 measured reflectionsl = −10→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0385P)2 + 0.3865P] where P = (Fo2 + 2Fc2)/3
2052 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co11.00000.00000.50000.0352 (2)
O30.5734 (4)0.6730 (3)0.6242 (2)0.0470 (6)
H30.63700.61540.56010.071*
N20.6548 (4)0.2945 (3)0.8556 (2)0.0313 (6)
H20.59960.31980.94040.038*
O10.9299 (4)0.2412 (3)0.4017 (2)0.0432 (6)
N10.8176 (4)0.1439 (3)0.6778 (2)0.0310 (6)
O20.7771 (4)0.5056 (3)0.4308 (2)0.0463 (6)
O40.4586 (4)0.6330 (3)0.8526 (2)0.0511 (7)
C30.6630 (5)0.4031 (4)0.7370 (3)0.0309 (7)
C50.7482 (5)0.1401 (4)0.8172 (3)0.0295 (7)
O50.7336 (3)−0.0027 (3)0.4303 (2)0.0456 (6)
H5A0.63630.09010.41780.055*
H5B0.7239−0.06200.36980.055*
C40.5565 (5)0.5820 (4)0.7409 (3)0.0359 (8)
N30.7778 (4)−0.1290 (3)1.1669 (3)0.0395 (7)
C10.8292 (5)0.3538 (4)0.4769 (3)0.0358 (8)
C100.7591 (5)−0.0006 (4)1.0681 (3)0.0357 (7)
H100.73950.09881.10060.043*
C20.7669 (5)0.3071 (4)0.6286 (3)0.0307 (7)
C60.7672 (5)−0.0064 (4)0.9188 (3)0.0302 (7)
C90.8085 (5)−0.2721 (4)1.1191 (3)0.0408 (8)
H90.8238−0.36341.18650.049*
C80.8181 (5)−0.2887 (4)0.9732 (3)0.0413 (8)
H80.8411−0.39010.94360.050*
C70.7934 (5)−0.1542 (4)0.8716 (3)0.0381 (8)
H70.7943−0.16280.77320.046*
U11U22U33U12U13U23
Co10.0425 (4)0.0304 (4)0.0199 (3)0.0005 (3)0.0020 (2)−0.0042 (2)
O30.0634 (17)0.0283 (12)0.0362 (13)−0.0031 (12)0.0034 (12)−0.0062 (10)
N20.0357 (15)0.0312 (14)0.0193 (12)−0.0042 (12)0.0043 (10)−0.0056 (10)
O10.0519 (15)0.0365 (13)0.0219 (11)0.0020 (11)0.0086 (10)−0.0030 (10)
N10.0381 (15)0.0277 (13)0.0184 (12)−0.0038 (12)0.0022 (10)−0.0016 (10)
O20.0629 (16)0.0325 (13)0.0277 (12)−0.0056 (12)0.0065 (11)0.0050 (10)
O40.0706 (18)0.0352 (13)0.0320 (13)0.0002 (12)0.0022 (12)−0.0142 (10)
C30.0337 (17)0.0270 (16)0.0239 (15)−0.0026 (13)0.0012 (12)−0.0043 (12)
C50.0319 (17)0.0280 (16)0.0217 (14)−0.0035 (13)0.0014 (12)−0.0047 (12)
O50.0465 (14)0.0443 (14)0.0339 (12)−0.0005 (11)−0.0039 (10)−0.0109 (10)
C40.0436 (19)0.0300 (17)0.0261 (16)−0.0045 (15)−0.0011 (14)−0.0043 (14)
N30.0473 (17)0.0373 (16)0.0261 (13)−0.0089 (13)0.0000 (12)0.0001 (12)
C10.0409 (19)0.0346 (18)0.0198 (15)−0.0019 (15)0.0016 (13)−0.0014 (13)
C100.0412 (19)0.0343 (18)0.0261 (15)−0.0083 (15)0.0008 (13)−0.0044 (13)
C20.0357 (18)0.0269 (16)0.0217 (14)−0.0036 (14)0.0010 (12)−0.0026 (12)
C60.0311 (17)0.0298 (16)0.0227 (14)−0.0055 (13)0.0047 (12)−0.0025 (12)
C90.043 (2)0.0353 (18)0.0373 (18)−0.0102 (16)−0.0024 (15)0.0064 (15)
C80.050 (2)0.0316 (18)0.0390 (19)−0.0113 (16)0.0023 (15)−0.0070 (15)
C70.044 (2)0.0421 (19)0.0241 (15)−0.0118 (16)0.0048 (14)−0.0074 (14)
Co1—O5i2.061 (2)C3—C21.374 (4)
Co1—O52.061 (2)C3—C41.481 (4)
Co1—O12.098 (2)C5—C61.465 (4)
Co1—O1i2.098 (2)O5—H5A0.8500
Co1—N12.215 (2)O5—H5B0.8499
Co1—N1i2.215 (2)N3—C101.332 (4)
O3—C41.279 (4)N3—C91.339 (4)
O3—H30.8200C1—C21.479 (4)
N2—C51.358 (4)C10—C61.394 (4)
N2—C31.368 (4)C10—H100.9300
N2—H20.8600C6—C71.384 (4)
O1—C11.243 (4)C9—C81.381 (4)
N1—C51.334 (3)C9—H90.9300
N1—C21.374 (4)C8—C71.380 (4)
O2—C11.276 (4)C8—H80.9300
O4—C41.223 (4)C7—H70.9300
O5i—Co1—O5180.0Co1—O5—H5A115.6
O5i—Co1—O189.88 (10)Co1—O5—H5B127.2
O5—Co1—O190.12 (10)H5A—O5—H5B107.7
O5i—Co1—O1i90.12 (10)O4—C4—O3124.5 (3)
O5—Co1—O1i89.88 (10)O4—C4—C3119.0 (3)
O1—Co1—O1i180.0O3—C4—C3116.5 (3)
O5i—Co1—N190.05 (9)C10—N3—C9117.7 (3)
O5—Co1—N189.95 (9)O1—C1—O2124.0 (3)
O1—Co1—N178.08 (8)O1—C1—C2117.3 (3)
O1i—Co1—N1101.92 (8)O2—C1—C2118.7 (3)
O5i—Co1—N1i89.95 (9)N3—C10—C6123.8 (3)
O5—Co1—N1i90.05 (9)N3—C10—H10118.1
O1—Co1—N1i101.92 (8)C6—C10—H10118.1
O1i—Co1—N1i78.08 (8)N1—C2—C3110.8 (2)
N1—Co1—N1i180.00 (7)N1—C2—C1119.0 (3)
C4—O3—H3109.5C3—C2—C1130.2 (3)
C5—N2—C3108.6 (2)C7—C6—C10117.7 (3)
C5—N2—H2125.7C7—C6—C5121.9 (3)
C3—N2—H2125.7C10—C6—C5120.4 (3)
C1—O1—Co1117.58 (19)N3—C9—C8122.3 (3)
C5—N1—C2105.3 (2)N3—C9—H9118.9
C5—N1—Co1146.4 (2)C8—C9—H9118.9
C2—N1—Co1107.94 (17)C7—C8—C9119.7 (3)
N2—C3—C2104.8 (3)C7—C8—H8120.1
N2—C3—C4121.4 (3)C9—C8—H8120.1
C2—C3—C4133.6 (3)C8—C7—C6118.7 (3)
N1—C5—N2110.5 (2)C8—C7—H7120.6
N1—C5—C6126.5 (3)C6—C7—H7120.6
N2—C5—C6123.0 (2)
O5i—Co1—O1—C1−88.7 (3)Co1—O1—C1—C2−0.4 (4)
O5—Co1—O1—C191.3 (3)C9—N3—C10—C60.8 (5)
N1—Co1—O1—C11.4 (2)C5—N1—C2—C3−1.2 (4)
N1i—Co1—O1—C1−178.6 (2)Co1—N1—C2—C3−176.6 (2)
O5i—Co1—N1—C5−84.2 (4)C5—N1—C2—C1178.0 (3)
O5—Co1—N1—C595.8 (4)Co1—N1—C2—C12.6 (3)
O1—Co1—N1—C5−174.0 (4)N2—C3—C2—N11.3 (4)
O1i—Co1—N1—C56.0 (4)C4—C3—C2—N1−172.9 (3)
O5i—Co1—N1—C287.8 (2)N2—C3—C2—C1−177.8 (3)
O5—Co1—N1—C2−92.2 (2)C4—C3—C2—C18.0 (6)
O1—Co1—N1—C2−2.0 (2)O1—C1—C2—N1−1.7 (5)
O1i—Co1—N1—C2178.0 (2)O2—C1—C2—N1178.3 (3)
C5—N2—C3—C2−0.9 (3)O1—C1—C2—C3177.3 (3)
C5—N2—C3—C4174.2 (3)O2—C1—C2—C3−2.7 (6)
C2—N1—C5—N20.6 (4)N3—C10—C6—C70.9 (5)
Co1—N1—C5—N2172.7 (3)N3—C10—C6—C5−179.1 (3)
C2—N1—C5—C6−179.1 (3)N1—C5—C6—C7−23.7 (5)
Co1—N1—C5—C6−7.0 (6)N2—C5—C6—C7156.7 (3)
C3—N2—C5—N10.2 (4)N1—C5—C6—C10156.4 (3)
C3—N2—C5—C6179.9 (3)N2—C5—C6—C10−23.3 (5)
N2—C3—C4—O4−0.4 (5)C10—N3—C9—C8−0.9 (5)
C2—C3—C4—O4173.0 (4)N3—C9—C8—C7−0.7 (5)
N2—C3—C4—O3−179.9 (3)C9—C8—C7—C62.4 (5)
C2—C3—C4—O3−6.5 (6)C10—C6—C7—C8−2.5 (5)
Co1—O1—C1—O2179.7 (3)C5—C6—C7—C8177.6 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O20.821.652.465 (3)176.
N2—H2···O4ii0.862.002.840 (3)166.
O5—H5A···O3iii0.852.072.918 (3)173.
O5—H5B···N3iv0.852.022.784 (3)150.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O20.821.652.465 (3)176
N2—H2⋯O4i0.862.002.840 (3)166
O5—H5A⋯O3ii0.852.072.918 (3)173
O5—H5B⋯N3iii0.852.022.784 (3)150

Symmetry codes: (i) ; (ii) ; (iii) .

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