Literature DB >> 21201031

trans-Diaqua-bis[5-carb-oxy-2-(3-pyridyl)-1H-imidazole-4-carboxyl-ato-κN,O]manganese(II).

Li-Zhuang Chen1.   

Abstract

In the title compound, [Mn(C(10)H(6)N(3)O(4))(2)(H(2)O)(2)], synthesized by hydro-thermal reaction, the Mn(II) ion lies on an inversion centre and displays a distorted octa-hedral coordination geometry defined by the two imidazole N atoms and two carboxylate O atoms of the two trans-standing chelate ligands, and two O atoms of the water mol-ecules. A two-dimensional supra-molecular architecture is formed via N-H⋯O, O-H⋯N and O-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2008        PMID: 21201031      PMCID: PMC2959396          DOI: 10.1107/S1600536808029073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry of imidazoles, see: Xiao et al. (2004 ▶); Zhang et al. (2004 ▶); Lu et al. (2006 ▶).

Experimental

Crystal data

[Mn(C10H6N3O4)2(H2O)2] M = 555.33 Triclinic, a = 6.9574 (7) Å b = 8.5636 (7) Å c = 9.4409 (16) Å α = 81.90 (3)° β = 83.42 (4)° γ = 72.10 (2)° V = 528.41 (11) Å3 Z = 1 Mo Kα radiation μ = 0.70 mm−1 T = 298 (2) K 0.25 × 0.20 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.845, T max = 0.869 5416 measured reflections 2378 independent reflections 1871 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.165 S = 1.11 2378 reflections 175 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.44 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808029073/bx2177sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808029073/bx2177Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C10H6N3O4)2(H2O)2]Z = 1
Mr = 555.33F(000) = 283
Triclinic, P1Dx = 1.745 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9574 (7) ÅCell parameters from 1463 reflections
b = 8.5636 (7) Åθ = 3.1–27.5°
c = 9.4409 (16) ŵ = 0.70 mm1
α = 81.90 (3)°T = 298 K
β = 83.42 (4)°Block, colourless
γ = 72.10 (2)°0.25 × 0.20 × 0.20 mm
V = 528.41 (11) Å3
Rigaku Mercury2 diffractometer2378 independent reflections
Radiation source: fine-focus sealed tube1871 reflections with I > 2σ(I)
graphiteRint = 0.029
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.5°
ω scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.845, Tmax = 0.869l = −12→12
5416 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.1003P)2 + 0.0122P] where P = (Fo2 + 2Fc2)/3
2378 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.54 e Å3
2 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.50000.50000.00000.0299 (2)
C10.3266 (4)0.8677 (4)−0.0160 (3)0.0290 (6)
C20.2634 (4)0.8148 (3)0.1332 (3)0.0253 (6)
C30.1577 (4)0.9082 (3)0.2405 (3)0.0260 (6)
C40.0487 (5)1.0861 (4)0.2425 (3)0.0308 (6)
C50.2472 (4)0.6428 (3)0.3206 (3)0.0229 (5)
C60.2698 (4)0.4926 (3)0.4203 (3)0.0253 (6)
C70.3049 (5)0.3401 (4)0.3713 (3)0.0336 (7)
H7A0.31200.33140.27370.040*
C80.3291 (5)0.2013 (4)0.4703 (3)0.0369 (7)
H8A0.35920.09720.43990.044*
C90.3080 (5)0.2195 (4)0.6156 (3)0.0345 (7)
H9A0.32150.12610.68170.041*
N30.2692 (4)0.3661 (3)0.6640 (3)0.0332 (6)
C110.2491 (5)0.4986 (4)0.5688 (3)0.0300 (6)
H11A0.21960.60100.60250.036*
N10.3172 (3)0.6504 (3)0.1834 (2)0.0255 (5)
N20.1531 (4)0.7971 (3)0.3573 (2)0.0269 (5)
H2A0.09920.82070.44120.032*
O10.4330 (4)0.7595 (3)−0.0912 (2)0.0380 (5)
O20.2722 (4)1.0220 (3)−0.0599 (2)0.0408 (6)
O30.0641 (4)1.1816 (3)0.1292 (2)0.0397 (6)
H30.16021.13480.07640.060*
O4−0.0526 (4)1.1310 (3)0.3540 (2)0.0457 (6)
O50.7793 (4)0.5087 (3)0.0738 (2)0.0414 (6)
H50.75440.55390.14760.062*
H5B0.867 (5)0.416 (3)0.083 (3)0.042 (10)*
U11U22U33U12U13U23
Mn10.0369 (4)0.0247 (4)0.0204 (3)0.0026 (3)0.0007 (3)−0.0056 (2)
C10.0337 (15)0.0254 (14)0.0204 (13)0.0004 (11)0.0015 (11)−0.0017 (10)
C20.0307 (14)0.0207 (13)0.0197 (13)−0.0006 (10)−0.0005 (11)−0.0035 (10)
C30.0315 (14)0.0231 (14)0.0205 (12)−0.0040 (11)0.0015 (11)−0.0049 (10)
C40.0366 (16)0.0242 (14)0.0257 (14)0.0005 (12)−0.0005 (12)−0.0061 (11)
C50.0233 (13)0.0235 (13)0.0184 (12)−0.0021 (10)0.0020 (10)−0.0047 (9)
C60.0270 (13)0.0265 (14)0.0208 (13)−0.0063 (11)0.0028 (11)−0.0041 (10)
C70.0455 (17)0.0288 (15)0.0212 (14)−0.0052 (13)0.0077 (13)−0.0064 (11)
C80.0493 (19)0.0225 (14)0.0336 (16)−0.0033 (12)−0.0003 (14)−0.0048 (11)
C90.0404 (17)0.0279 (15)0.0303 (16)−0.0074 (13)0.0003 (13)0.0039 (12)
N30.0419 (15)0.0327 (13)0.0209 (12)−0.0075 (11)0.0023 (10)−0.0012 (9)
C110.0388 (16)0.0271 (14)0.0226 (14)−0.0065 (12)−0.0030 (12)−0.0041 (11)
N10.0310 (12)0.0214 (11)0.0200 (11)−0.0021 (9)−0.0007 (10)−0.0028 (9)
N20.0334 (12)0.0246 (12)0.0185 (11)−0.0032 (10)0.0038 (9)−0.0058 (8)
O10.0503 (14)0.0304 (11)0.0210 (10)0.0023 (10)0.0077 (9)−0.0028 (8)
O20.0578 (14)0.0251 (11)0.0257 (11)0.0011 (10)0.0082 (10)0.0035 (8)
O30.0508 (14)0.0229 (11)0.0330 (12)0.0038 (9)0.0059 (10)−0.0031 (8)
O40.0650 (16)0.0303 (12)0.0291 (12)0.0059 (11)0.0040 (11)−0.0123 (9)
O50.0423 (13)0.0434 (14)0.0309 (12)0.0012 (11)−0.0015 (10)−0.0119 (10)
Mn1—O5i2.163 (2)C5—N21.356 (3)
Mn1—O52.163 (2)C5—C61.460 (4)
Mn1—O1i2.194 (2)C6—C71.389 (4)
Mn1—O12.194 (2)C6—C111.399 (4)
Mn1—N1i2.322 (2)C7—C81.383 (4)
Mn1—N12.322 (2)C7—H7A0.9300
C1—O11.246 (3)C8—C91.388 (4)
C1—O21.279 (3)C8—H8A0.9300
C1—C21.477 (4)C9—N31.335 (4)
C2—N11.370 (3)C9—H9A0.9300
C2—C31.380 (4)N3—C111.326 (4)
C3—N21.355 (3)C11—H11A0.9300
C3—C41.480 (4)N2—H2A0.8600
C4—O41.238 (3)O3—H30.8200
C4—O31.267 (4)O5—H50.8200
C5—N11.331 (3)O5—H5B0.839 (17)
O5i—Mn1—O5180.00 (11)N2—C5—C6123.9 (2)
O5i—Mn1—O1i90.51 (10)C7—C6—C11117.7 (3)
O5—Mn1—O1i89.49 (10)C7—C6—C5121.3 (2)
O5i—Mn1—O189.49 (10)C11—C6—C5121.0 (2)
O5—Mn1—O190.51 (10)C8—C7—C6118.9 (3)
O1i—Mn1—O1180.0C8—C7—H7A120.6
O5i—Mn1—N1i90.00 (8)C6—C7—H7A120.6
O5—Mn1—N1i90.00 (8)C7—C8—C9119.2 (3)
O1i—Mn1—N1i74.86 (8)C7—C8—H8A120.4
O1—Mn1—N1i105.14 (8)C9—C8—H8A120.4
O5i—Mn1—N190.00 (8)N3—C9—C8122.5 (3)
O5—Mn1—N190.00 (8)N3—C9—H9A118.8
O1i—Mn1—N1105.14 (8)C8—C9—H9A118.8
O1—Mn1—N174.86 (8)C11—N3—C9118.2 (3)
N1i—Mn1—N1180.0N3—C11—C6123.5 (3)
O1—C1—O2123.7 (3)N3—C11—H11A118.2
O1—C1—C2118.1 (3)C6—C11—H11A118.2
O2—C1—C2118.2 (3)C5—N1—C2105.7 (2)
N1—C2—C3110.3 (2)C5—N1—Mn1145.47 (18)
N1—C2—C1119.8 (2)C2—N1—Mn1108.75 (16)
C3—C2—C1129.9 (3)C3—N2—C5109.1 (2)
N2—C3—C2104.8 (2)C3—N2—H2A125.5
N2—C3—C4121.9 (2)C5—N2—H2A125.5
C2—C3—C4133.1 (3)C1—O1—Mn1118.36 (18)
O4—C4—O3124.5 (3)C4—O3—H3109.5
O4—C4—C3117.8 (3)Mn1—O5—H5109.5
O3—C4—C3117.7 (2)Mn1—O5—H5B113 (2)
N1—C5—N2110.0 (2)H5—O5—H5B112.4
N1—C5—C6126.0 (2)
O1—C1—C2—N1−1.9 (4)C6—C5—N1—C2−179.2 (3)
O2—C1—C2—N1179.4 (3)N2—C5—N1—Mn1176.6 (2)
O1—C1—C2—C3175.6 (3)C6—C5—N1—Mn1−2.2 (5)
O2—C1—C2—C3−3.1 (5)C3—C2—N1—C5−0.6 (3)
N1—C2—C3—N21.4 (3)C1—C2—N1—C5177.3 (3)
C1—C2—C3—N2−176.2 (3)C3—C2—N1—Mn1−178.84 (19)
N1—C2—C3—C4−173.1 (3)C1—C2—N1—Mn1−0.9 (3)
C1—C2—C3—C49.3 (6)O5i—Mn1—N1—C595.6 (3)
N2—C3—C4—O4−1.9 (5)O5—Mn1—N1—C5−84.4 (3)
C2—C3—C4—O4171.9 (3)O1i—Mn1—N1—C55.0 (4)
N2—C3—C4—O3178.8 (3)O1—Mn1—N1—C5−175.0 (4)
C2—C3—C4—O3−7.4 (5)O5i—Mn1—N1—C2−87.49 (19)
N1—C5—C6—C7−22.7 (4)O5—Mn1—N1—C292.51 (19)
N2—C5—C6—C7158.6 (3)O1i—Mn1—N1—C2−178.01 (18)
N1—C5—C6—C11159.7 (3)O1—Mn1—N1—C21.99 (18)
N2—C5—C6—C11−18.9 (4)C2—C3—N2—C5−1.7 (3)
C11—C6—C7—C8−3.7 (4)C4—C3—N2—C5173.6 (3)
C5—C6—C7—C8178.7 (3)N1—C5—N2—C31.4 (3)
C6—C7—C8—C93.1 (5)C6—C5—N2—C3−179.8 (2)
C7—C8—C9—N3−1.4 (5)O2—C1—O1—Mn1−177.4 (2)
C8—C9—N3—C110.4 (5)C2—C1—O1—Mn13.9 (4)
C9—N3—C11—C6−1.1 (5)O5i—Mn1—O1—C186.8 (2)
C7—C6—C11—N32.8 (4)O5—Mn1—O1—C1−93.2 (2)
C5—C6—C11—N3−179.6 (3)N1i—Mn1—O1—C1176.7 (2)
N2—C5—N1—C2−0.4 (3)N1—Mn1—O1—C1−3.3 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O4ii0.862.002.840 (3)164.
O5—H5···N3iii0.821.972.779 (3)171.
O5—H5B···O3iv0.84 (2)2.07 (2)2.908 (3)173 (3)
O3—H3···O20.821.692.456 (3)155.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O4i0.862.002.840 (3)164
O5—H5⋯N3ii0.821.972.779 (3)171
O5—H5B⋯O3iii0.839 (17)2.074 (18)2.908 (3)173 (3)
O3—H3⋯O20.821.692.456 (3)155

Symmetry codes: (i) ; (ii) ; (iii) .

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