Literature DB >> 22058835

Poly[[{μ(3)-2-[4-(2-hy-droxy-eth-yl)piperazin-1-yl]ethane-sulfonato}-silver(I)] trihydrate].

Stephanie M Bilinovich1, Matthew J Panzner, Wiley J Youngs, Thomas C Leeper.   

Abstract

Ethane-sulfonic acid-based buffers like 2-[4-(2-hy-droxy-eth-yl)-piperazin-1-yl]ethane-sulfonic acid (HEPES) are commonly used in biological experiments because of their ability to act as non-coordinating ligands towards metal ions. However, recent work has shown that some of these buffers may in fact coordinate metal ions. The title complex, {[Ag(C(8)H(17)N(2)O(4)S)]·3H(2)O}(n), is a metal-organic framework formed from HEPES and a silver(I) ion. In this polymeric complex, each Ag atom is primarily coordinated by two N atoms in a distorted linear geometry. Weaker secondary bonding inter-actions from the hy-droxy and sulfate O atoms of HEPES complete a distorted seesaw geometry. The crystal structure is stabilized by O-H⋯O hydrogen-bonding interactions.

Entities:  

Year:  2011        PMID: 22058835      PMCID: PMC3200587          DOI: 10.1107/S160053681103008X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other compounds with silver bound to ethane­sulfonic acid derivatives that are used as buffers, see: Jiang, Liu et al. (2008 ▶), where HEPES is used, and Jiang, Ma et al. (2008 ▶), where MES is used. For background on metal coordination to buffer compounds like HEPES, see: Soares & Conde (2000 ▶); Sokolowska & Bal (2005 ▶). For copper complexes of HEPES inter­fering with protein assays, see: Gregory & Sajdera (1970 ▶); Lleu & Rebel (1991 ▶); Kaushal & Barnes (1986 ▶). For general information on HEPES and related buffers, see: Good et al. (1966 ▶).

Experimental

Crystal data

[Ag(C8H17N2O4S)]·3H2O M = 399.21 Monoclinic, a = 11.2811 (19) Å b = 10.0973 (17) Å c = 12.875 (2) Å β = 90.910 (3)° V = 1466.4 (4) Å3 Z = 4 Mo Kα radiation μ = 1.55 mm−1 T = 100 K 0.25 × 0.10 × 0.07 mm

Data collection

Bruker APEXI CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.699, T max = 0.900 11308 measured reflections 2946 independent reflections 2446 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.09 2946 reflections 190 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.58 e Å−3 Δρmin = −0.73 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681103008X/mw2014sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103008X/mw2014Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag(C8H17N2O4S)]·3H2OF(000) = 816
Mr = 399.21Dx = 1.808 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1601 reflections
a = 11.2811 (19) Åθ = 2.7–21.3°
b = 10.0973 (17) ŵ = 1.55 mm1
c = 12.875 (2) ÅT = 100 K
β = 90.910 (3)°Column, colorless
V = 1466.4 (4) Å30.25 × 0.10 × 0.07 mm
Z = 4
Bruker APEXI CCD diffractometer2946 independent reflections
Radiation source: fine-focus sealed tube2446 reflections with I > 2σ(I)
graphiteRint = 0.050
φ and ω scansθmax = 26.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker 2001)h = −14→14
Tmin = 0.699, Tmax = 0.900k = −12→11
11308 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0356P)2] where P = (Fo2 + 2Fc2)/3
2946 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 1.58 e Å3
9 restraintsΔρmin = −0.73 e Å3
Experimental. Two A level alerts are generated by cif check: Angle Calc 87.45 (5), Rep 94.22 (9), Dev..135.40 Sigma N2-AG1-O2 Angle Calc 89.17 (5), Rep 87.18 (7), Dev..135.40 Sigma O2-AG1-O4 Both of the reported angles were verified during refinement with SHELXL-97 and can be confirmed by analyzing the resulting cif with Mercury.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Distance and angle restraints were applied to the hydrogen atoms associated with the three solvent water molecules found from the difference Fourier map.
xyzUiso*/Ueq
Ag10.38547 (2)0.14705 (2)0.29401 (2)0.01471 (11)
S10.68653 (8)−0.16901 (8)0.41427 (7)0.0135 (2)
O10.6794 (2)−0.3109 (2)0.39089 (19)0.0177 (6)
O20.7190 (2)−0.1418 (2)0.52171 (19)0.0189 (6)
O30.7607 (2)−0.1011 (3)0.3391 (2)0.0196 (6)
O40.5744 (2)0.2274 (2)0.39058 (19)0.0175 (6)
H40.64370.21010.37170.026*
O50.8863 (3)0.3405 (3)0.4864 (2)0.0317 (7)
H5C0.883 (5)0.412 (3)0.452 (3)0.048*
H5D0.862 (4)0.281 (3)0.444 (3)0.048*
O60.7024 (3)0.6635 (2)0.1703 (2)0.0211 (6)
H6A0.707 (4)0.582 (2)0.158 (3)0.032*
H6C0.704 (4)0.666 (4)0.2369 (15)0.032*
O70.0771 (3)0.4128 (3)0.6131 (2)0.0321 (7)
H7C0.027 (3)0.374 (4)0.574 (3)0.048*
H7D0.143 (2)0.375 (4)0.617 (4)0.048*
N10.3695 (2)−0.0753 (3)0.2742 (2)0.0123 (6)
N20.3799 (3)0.3721 (3)0.2809 (2)0.0142 (7)
C10.2842 (3)−0.1321 (3)0.3490 (3)0.0139 (7)
H1B0.3071−0.10460.42030.017*
H1A0.2879−0.23000.34580.017*
C20.3296 (3)−0.1120 (4)0.1675 (3)0.0148 (8)
H2B0.3345−0.20930.15930.018*
H2A0.3832−0.07110.11660.018*
C30.2954 (3)0.4323 (3)0.3552 (3)0.0153 (8)
H3B0.29980.53000.35030.018*
H3A0.31820.40640.42690.018*
C40.3408 (3)0.4125 (3)0.1743 (3)0.0140 (7)
H4A0.39480.37350.12280.017*
H4B0.34540.51010.16810.017*
C50.4886 (3)−0.1349 (3)0.2912 (3)0.0124 (7)
H5B0.5429−0.10060.23790.015*
H5A0.4826−0.23210.28200.015*
C60.5408 (3)−0.1060 (4)0.3980 (3)0.0144 (8)
H6D0.4893−0.14550.45120.017*
H6B0.5421−0.00900.40910.017*
C70.5006 (3)0.4236 (3)0.3009 (3)0.0164 (8)
H7B0.49660.52120.30760.020*
H7A0.55040.40310.24040.020*
C80.5599 (3)0.3672 (3)0.3982 (3)0.0187 (8)
H8B0.63840.40940.40860.022*
H8A0.51110.38810.45930.022*
U11U22U33U12U13U23
Ag10.01836 (18)0.00864 (16)0.01706 (17)−0.00008 (10)−0.00190 (12)−0.00012 (11)
S10.0165 (5)0.0111 (4)0.0130 (4)0.0014 (3)−0.0011 (4)0.0000 (3)
O10.0216 (14)0.0125 (12)0.0190 (14)0.0033 (10)−0.0010 (12)−0.0018 (11)
O20.0219 (15)0.0213 (14)0.0133 (13)0.0004 (11)−0.0053 (11)−0.0043 (11)
O30.0214 (15)0.0181 (13)0.0194 (14)−0.0005 (11)0.0043 (12)0.0007 (11)
O40.0177 (13)0.0118 (13)0.0228 (14)0.0004 (10)−0.0014 (11)0.0000 (11)
O50.0340 (18)0.0341 (18)0.0270 (17)−0.0089 (14)−0.0016 (15)−0.0027 (13)
O60.0262 (16)0.0168 (14)0.0203 (14)0.0012 (11)0.0016 (13)−0.0001 (12)
O70.0300 (18)0.0325 (18)0.0334 (18)0.0154 (14)−0.0098 (14)−0.0091 (14)
N10.0110 (16)0.0115 (15)0.0142 (16)−0.0011 (11)0.0006 (12)0.0015 (12)
N20.0151 (17)0.0123 (15)0.0151 (16)−0.0013 (11)0.0008 (13)0.0031 (12)
C10.0163 (19)0.0119 (18)0.0134 (18)−0.0016 (14)0.0006 (15)−0.0001 (14)
C20.019 (2)0.0154 (18)0.0097 (17)−0.0001 (14)0.0015 (15)−0.0012 (14)
C30.0180 (19)0.0124 (18)0.0154 (19)0.0057 (14)0.0003 (15)−0.0006 (15)
C40.0175 (19)0.0110 (18)0.0135 (18)0.0013 (14)0.0036 (15)0.0020 (14)
C50.0164 (19)0.0091 (17)0.0117 (17)0.0020 (13)0.0000 (15)0.0015 (14)
C60.0147 (19)0.0160 (18)0.0125 (18)0.0021 (14)−0.0026 (15)−0.0012 (15)
C70.0143 (19)0.0111 (18)0.024 (2)−0.0033 (14)0.0002 (16)0.0017 (16)
C80.019 (2)0.0133 (19)0.024 (2)−0.0012 (14)−0.0048 (17)−0.0046 (16)
Ag1—N12.266 (3)C1—C4ii1.506 (5)
Ag1—N22.280 (3)C1—H1B0.9900
Ag1—O2i2.666 (2)C1—H1A0.9900
Ag1—O42.581 (2)C2—C3ii1.503 (5)
S1—O21.452 (3)C2—H2B0.9900
S1—O31.461 (3)C2—H2A0.9900
S1—O11.466 (3)C3—C2iii1.503 (5)
S1—C61.772 (4)C3—H3B0.9900
O4—C81.425 (4)C3—H3A0.9900
O4—H40.8400C4—C1iii1.506 (5)
O5—H5C0.851 (19)C4—H4A0.9900
O5—H5D0.855 (18)C4—H4B0.9900
O6—H6A0.839 (18)C5—C61.515 (5)
O6—H6C0.858 (18)C5—H5B0.9900
O7—H7C0.848 (19)C5—H5A0.9900
O7—H7D0.838 (19)C6—H6D0.9900
N1—C51.485 (4)C6—H6B0.9900
N1—C21.486 (4)C7—C81.521 (5)
N1—C11.486 (4)C7—H7B0.9900
N2—C71.477 (4)C7—H7A0.9900
N2—C31.490 (4)C8—H8B0.9900
N2—C41.492 (4)C8—H8A0.9900
N1—Ag1—N2167.73 (11)C3ii—C2—H2A109.2
N1—Ag1—O2i92.58 (8)H2B—C2—H2A107.9
N1—Ag1—O4115.41 (8)N2—C3—C2iii111.2 (3)
N2iii—Ag1—O2i94.22 (9)N2—C3—H3B109.4
N2—Ag1—O475.16 (9)C2iii—C3—H3B109.4
O2i—Ag1—O4iii87.18 (7)N2—C3—H3A109.4
O2—S1—O3113.85 (16)C2iii—C3—H3A109.4
O2—S1—O1113.13 (14)H3B—C3—H3A108.0
O3—S1—O1110.65 (15)N2—C4—C1iii111.3 (3)
O2—S1—C6105.35 (16)N2—C4—H4A109.4
O3—S1—C6107.02 (16)C1iii—C4—H4A109.4
O1—S1—C6106.21 (16)N2—C4—H4B109.4
C8—O4—H4109.5C1iii—C4—H4B109.4
H5C—O5—H5D105 (4)H4A—C4—H4B108.0
H6A—O6—H6C103 (3)N1—C5—C6113.1 (3)
H7C—O7—H7D113 (4)N1—C5—H5B109.0
C5—N1—C2107.1 (3)C6—C5—H5B109.0
C5—N1—C1109.9 (3)N1—C5—H5A109.0
C2—N1—C1108.2 (3)C6—C5—H5A109.0
C5—N1—Ag1108.4 (2)H5B—C5—H5A107.8
C2—N1—Ag1111.9 (2)C5—C6—S1112.6 (2)
C1—N1—Ag1111.2 (2)C5—C6—H6D109.1
C7—N2—C3110.0 (3)S1—C6—H6D109.1
C7—N2—C4108.8 (3)C5—C6—H6B109.1
C3—N2—C4107.2 (3)S1—C6—H6B109.1
C7—N2—Ag1108.3 (2)H6D—C6—H6B107.8
C3—N2—Ag1112.1 (2)N2—C7—C8113.8 (3)
C4—N2—Ag1110.4 (2)N2—C7—H7B108.8
N1—C1—C4ii111.7 (3)C8—C7—H7B108.8
N1—C1—H1B109.3N2—C7—H7A108.8
C4ii—C1—H1B109.3C8—C7—H7A108.8
N1—C1—H1A109.3H7B—C7—H7A107.7
C4ii—C1—H1A109.3O4—C8—C7111.4 (3)
H1B—C1—H1A108.0O4—C8—H8B109.4
N1—C2—C3ii112.0 (3)C7—C8—H8B109.4
N1—C2—H2B109.2O4—C8—H8A109.4
C3ii—C2—H2B109.2C7—C8—H8A109.4
N1—C2—H2A109.2H8B—C8—H8A108.0
N2—Ag1—N1—C5130.6 (5)C7—N2—C4—C1iii−177.5 (3)
N2—Ag1—N1—C212.7 (6)C3—N2—C4—C1iii−58.5 (4)
N2—Ag1—N1—C1−108.5 (5)Ag1—N2—C4—C1iii63.8 (3)
N1—Ag1—N2—C7−131.4 (5)C2—N1—C5—C6−179.8 (3)
N1—Ag1—N2—C3107.1 (5)C1—N1—C5—C6−62.4 (4)
N1—Ag1—N2—C4−12.4 (6)Ag1—N1—C5—C659.3 (3)
C5—N1—C1—C4ii−172.7 (3)N1—C5—C6—S1−176.3 (2)
C2—N1—C1—C4ii−56.0 (4)O2—S1—C6—C5−175.8 (2)
Ag1—N1—C1—C4ii67.3 (3)O3—S1—C6—C562.7 (3)
C5—N1—C2—C3ii174.6 (3)O1—S1—C6—C5−55.5 (3)
C1—N1—C2—C3ii56.1 (4)C3—N2—C7—C874.0 (4)
Ag1—N1—C2—C3ii−66.7 (3)C4—N2—C7—C8−168.8 (3)
C7—N2—C3—C2iii176.5 (3)Ag1—N2—C7—C8−48.8 (3)
C4—N2—C3—C2iii58.4 (4)N2—C7—C8—O461.9 (4)
Ag1—N2—C3—C2iii−62.9 (3)
D—H···AD—HH···AD···AD—H···A
O7—H7C···O5iv0.85 (2)1.96 (2)2.777 (4)161 (4)
O6—H6A···O3v0.84 (2)1.88 (2)2.706 (4)166 (4)
O6—H6C···O1vi0.86 (2)2.02 (2)2.868 (4)169 (4)
O5—H5C···O7vii0.85 (2)2.01 (2)2.834 (4)163 (5)
O5—H5D···O6viii0.86 (2)2.02 (2)2.864 (4)171 (4)
O4—H4···O6viii0.841.892.726 (4)178
Ag1—N12.266 (3)
Ag1—N22.280 (3)
Ag1—O2i2.666 (2)
Ag1—O42.581 (2)
N1—Ag1—N2167.73 (11)
N1—Ag1—O2i92.58 (8)
N1—Ag1—O4115.41 (8)
N2ii—Ag1—O2i94.22 (9)
N2—Ag1—O475.16 (9)
O2i—Ag1—O4ii87.18 (7)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7C⋯O5iii0.85 (2)1.96 (2)2.777 (4)161 (4)
O6—H6A⋯O3iv0.84 (2)1.88 (2)2.706 (4)166 (4)
O6—H6C⋯O1v0.86 (2)2.02 (2)2.868 (4)169 (4)
O5—H5C⋯O7vi0.85 (2)2.01 (2)2.834 (4)163 (5)
O5—H5D⋯O6vii0.86 (2)2.02 (2)2.864 (4)171 (4)
O4—H4⋯O6vii0.841.892.726 (4)178

Symmetry codes: (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  6 in total

1.  Interference of Good's buffers and other biological buffers with protein determination.

Authors:  P L Lleu; G Rebel
Journal:  Anal Biochem       Date:  1991-01       Impact factor: 3.365

2.  Cu(II) complexation by "non-coordinating" N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid (HEPES buffer).

Authors:  Magdalena Sokołowska; Wojciech Bal
Journal:  J Inorg Biochem       Date:  2005-08       Impact factor: 4.155

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Interference in the Lowry method for protein determination.

Authors:  J D Gregory; S W Sajdera
Journal:  Science       Date:  1970-07-03       Impact factor: 47.728

5.  Hydrogen ion buffers for biological research.

Authors:  N E Good; G D Winget; W Winter; T N Connolly; S Izawa; R M Singh
Journal:  Biochemistry       Date:  1966-02       Impact factor: 3.162

6.  Effect of zwitterionic buffers on measurement of small masses of protein with bicinchoninic acid.

Authors:  V Kaushal; L D Barnes
Journal:  Anal Biochem       Date:  1986-09       Impact factor: 3.365

  6 in total

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