| Literature DB >> 22058835 |
Stephanie M Bilinovich1, Matthew J Panzner, Wiley J Youngs, Thomas C Leeper.
Abstract
Ethane-sulfonic acid-based buffers like 2-[4-(2-hy-droxy-eth-yl)-piperazin-1-yl]ethane-sulfonic acid (HEPES) are commonly used in biological experiments because of their ability to act as non-coordinating ligands towards metal ions. However, recent work has shown that some of these buffers may in fact coordinate metal ions. The title complex, {[Ag(C(8)H(17)N(2)O(4)S)]·3H(2)O}(n), is a metal-organic framework formed from HEPES and a silver(I) ion. In this polymeric complex, each Ag atom is primarily coordinated by two N atoms in a distorted linear geometry. Weaker secondary bonding inter-actions from the hy-droxy and sulfate O atoms of HEPES complete a distorted seesaw geometry. The crystal structure is stabilized by O-H⋯O hydrogen-bonding interactions.Entities:
Year: 2011 PMID: 22058835 PMCID: PMC3200587 DOI: 10.1107/S160053681103008X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ag(C8H17N2O4S)]·3H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1601 reflections |
| θ = 2.7–21.3° | |
| µ = 1.55 mm−1 | |
| β = 90.910 (3)° | Column, colorless |
| 0.25 × 0.10 × 0.07 mm | |
| Bruker APEXI CCD diffractometer | 2946 independent reflections |
| Radiation source: fine-focus sealed tube | 2446 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.3°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 11308 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2946 reflections | (Δ/σ)max = 0.001 |
| 190 parameters | Δρmax = 1.58 e Å−3 |
| 9 restraints | Δρmin = −0.73 e Å−3 |
| Experimental. Two A level alerts are generated by cif check: Angle Calc 87.45 (5), Rep 94.22 (9), Dev..135.40 Sigma N2-AG1-O2 Angle Calc 89.17 (5), Rep 87.18 (7), Dev..135.40 Sigma O2-AG1-O4 Both of the reported angles were verified during refinement with SHELXL-97 and can be confirmed by analyzing the resulting cif with Mercury. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ag1 | 0.38547 (2) | 0.14705 (2) | 0.29401 (2) | 0.01471 (11) | |
| S1 | 0.68653 (8) | −0.16901 (8) | 0.41427 (7) | 0.0135 (2) | |
| O1 | 0.6794 (2) | −0.3109 (2) | 0.39089 (19) | 0.0177 (6) | |
| O2 | 0.7190 (2) | −0.1418 (2) | 0.52171 (19) | 0.0189 (6) | |
| O3 | 0.7607 (2) | −0.1011 (3) | 0.3391 (2) | 0.0196 (6) | |
| O4 | 0.5744 (2) | 0.2274 (2) | 0.39058 (19) | 0.0175 (6) | |
| H4 | 0.6437 | 0.2101 | 0.3717 | 0.026* | |
| O5 | 0.8863 (3) | 0.3405 (3) | 0.4864 (2) | 0.0317 (7) | |
| H5C | 0.883 (5) | 0.412 (3) | 0.452 (3) | 0.048* | |
| H5D | 0.862 (4) | 0.281 (3) | 0.444 (3) | 0.048* | |
| O6 | 0.7024 (3) | 0.6635 (2) | 0.1703 (2) | 0.0211 (6) | |
| H6A | 0.707 (4) | 0.582 (2) | 0.158 (3) | 0.032* | |
| H6C | 0.704 (4) | 0.666 (4) | 0.2369 (15) | 0.032* | |
| O7 | 0.0771 (3) | 0.4128 (3) | 0.6131 (2) | 0.0321 (7) | |
| H7C | 0.027 (3) | 0.374 (4) | 0.574 (3) | 0.048* | |
| H7D | 0.143 (2) | 0.375 (4) | 0.617 (4) | 0.048* | |
| N1 | 0.3695 (2) | −0.0753 (3) | 0.2742 (2) | 0.0123 (6) | |
| N2 | 0.3799 (3) | 0.3721 (3) | 0.2809 (2) | 0.0142 (7) | |
| C1 | 0.2842 (3) | −0.1321 (3) | 0.3490 (3) | 0.0139 (7) | |
| H1B | 0.3071 | −0.1046 | 0.4203 | 0.017* | |
| H1A | 0.2879 | −0.2300 | 0.3458 | 0.017* | |
| C2 | 0.3296 (3) | −0.1120 (4) | 0.1675 (3) | 0.0148 (8) | |
| H2B | 0.3345 | −0.2093 | 0.1593 | 0.018* | |
| H2A | 0.3832 | −0.0711 | 0.1166 | 0.018* | |
| C3 | 0.2954 (3) | 0.4323 (3) | 0.3552 (3) | 0.0153 (8) | |
| H3B | 0.2998 | 0.5300 | 0.3503 | 0.018* | |
| H3A | 0.3182 | 0.4064 | 0.4269 | 0.018* | |
| C4 | 0.3408 (3) | 0.4125 (3) | 0.1743 (3) | 0.0140 (7) | |
| H4A | 0.3948 | 0.3735 | 0.1228 | 0.017* | |
| H4B | 0.3454 | 0.5101 | 0.1681 | 0.017* | |
| C5 | 0.4886 (3) | −0.1349 (3) | 0.2912 (3) | 0.0124 (7) | |
| H5B | 0.5429 | −0.1006 | 0.2379 | 0.015* | |
| H5A | 0.4826 | −0.2321 | 0.2820 | 0.015* | |
| C6 | 0.5408 (3) | −0.1060 (4) | 0.3980 (3) | 0.0144 (8) | |
| H6D | 0.4893 | −0.1455 | 0.4512 | 0.017* | |
| H6B | 0.5421 | −0.0090 | 0.4091 | 0.017* | |
| C7 | 0.5006 (3) | 0.4236 (3) | 0.3009 (3) | 0.0164 (8) | |
| H7B | 0.4966 | 0.5212 | 0.3076 | 0.020* | |
| H7A | 0.5504 | 0.4031 | 0.2404 | 0.020* | |
| C8 | 0.5599 (3) | 0.3672 (3) | 0.3982 (3) | 0.0187 (8) | |
| H8B | 0.6384 | 0.4094 | 0.4086 | 0.022* | |
| H8A | 0.5111 | 0.3881 | 0.4593 | 0.022* |
| Ag1 | 0.01836 (18) | 0.00864 (16) | 0.01706 (17) | −0.00008 (10) | −0.00190 (12) | −0.00012 (11) |
| S1 | 0.0165 (5) | 0.0111 (4) | 0.0130 (4) | 0.0014 (3) | −0.0011 (4) | 0.0000 (3) |
| O1 | 0.0216 (14) | 0.0125 (12) | 0.0190 (14) | 0.0033 (10) | −0.0010 (12) | −0.0018 (11) |
| O2 | 0.0219 (15) | 0.0213 (14) | 0.0133 (13) | 0.0004 (11) | −0.0053 (11) | −0.0043 (11) |
| O3 | 0.0214 (15) | 0.0181 (13) | 0.0194 (14) | −0.0005 (11) | 0.0043 (12) | 0.0007 (11) |
| O4 | 0.0177 (13) | 0.0118 (13) | 0.0228 (14) | 0.0004 (10) | −0.0014 (11) | 0.0000 (11) |
| O5 | 0.0340 (18) | 0.0341 (18) | 0.0270 (17) | −0.0089 (14) | −0.0016 (15) | −0.0027 (13) |
| O6 | 0.0262 (16) | 0.0168 (14) | 0.0203 (14) | 0.0012 (11) | 0.0016 (13) | −0.0001 (12) |
| O7 | 0.0300 (18) | 0.0325 (18) | 0.0334 (18) | 0.0154 (14) | −0.0098 (14) | −0.0091 (14) |
| N1 | 0.0110 (16) | 0.0115 (15) | 0.0142 (16) | −0.0011 (11) | 0.0006 (12) | 0.0015 (12) |
| N2 | 0.0151 (17) | 0.0123 (15) | 0.0151 (16) | −0.0013 (11) | 0.0008 (13) | 0.0031 (12) |
| C1 | 0.0163 (19) | 0.0119 (18) | 0.0134 (18) | −0.0016 (14) | 0.0006 (15) | −0.0001 (14) |
| C2 | 0.019 (2) | 0.0154 (18) | 0.0097 (17) | −0.0001 (14) | 0.0015 (15) | −0.0012 (14) |
| C3 | 0.0180 (19) | 0.0124 (18) | 0.0154 (19) | 0.0057 (14) | 0.0003 (15) | −0.0006 (15) |
| C4 | 0.0175 (19) | 0.0110 (18) | 0.0135 (18) | 0.0013 (14) | 0.0036 (15) | 0.0020 (14) |
| C5 | 0.0164 (19) | 0.0091 (17) | 0.0117 (17) | 0.0020 (13) | 0.0000 (15) | 0.0015 (14) |
| C6 | 0.0147 (19) | 0.0160 (18) | 0.0125 (18) | 0.0021 (14) | −0.0026 (15) | −0.0012 (15) |
| C7 | 0.0143 (19) | 0.0111 (18) | 0.024 (2) | −0.0033 (14) | 0.0002 (16) | 0.0017 (16) |
| C8 | 0.019 (2) | 0.0133 (19) | 0.024 (2) | −0.0012 (14) | −0.0048 (17) | −0.0046 (16) |
| Ag1—N1 | 2.266 (3) | C1—C4ii | 1.506 (5) |
| Ag1—N2 | 2.280 (3) | C1—H1B | 0.9900 |
| Ag1—O2i | 2.666 (2) | C1—H1A | 0.9900 |
| Ag1—O4 | 2.581 (2) | C2—C3ii | 1.503 (5) |
| S1—O2 | 1.452 (3) | C2—H2B | 0.9900 |
| S1—O3 | 1.461 (3) | C2—H2A | 0.9900 |
| S1—O1 | 1.466 (3) | C3—C2iii | 1.503 (5) |
| S1—C6 | 1.772 (4) | C3—H3B | 0.9900 |
| O4—C8 | 1.425 (4) | C3—H3A | 0.9900 |
| O4—H4 | 0.8400 | C4—C1iii | 1.506 (5) |
| O5—H5C | 0.851 (19) | C4—H4A | 0.9900 |
| O5—H5D | 0.855 (18) | C4—H4B | 0.9900 |
| O6—H6A | 0.839 (18) | C5—C6 | 1.515 (5) |
| O6—H6C | 0.858 (18) | C5—H5B | 0.9900 |
| O7—H7C | 0.848 (19) | C5—H5A | 0.9900 |
| O7—H7D | 0.838 (19) | C6—H6D | 0.9900 |
| N1—C5 | 1.485 (4) | C6—H6B | 0.9900 |
| N1—C2 | 1.486 (4) | C7—C8 | 1.521 (5) |
| N1—C1 | 1.486 (4) | C7—H7B | 0.9900 |
| N2—C7 | 1.477 (4) | C7—H7A | 0.9900 |
| N2—C3 | 1.490 (4) | C8—H8B | 0.9900 |
| N2—C4 | 1.492 (4) | C8—H8A | 0.9900 |
| N1—Ag1—N2 | 167.73 (11) | C3ii—C2—H2A | 109.2 |
| N1—Ag1—O2i | 92.58 (8) | H2B—C2—H2A | 107.9 |
| N1—Ag1—O4 | 115.41 (8) | N2—C3—C2iii | 111.2 (3) |
| N2iii—Ag1—O2i | 94.22 (9) | N2—C3—H3B | 109.4 |
| N2—Ag1—O4 | 75.16 (9) | C2iii—C3—H3B | 109.4 |
| O2i—Ag1—O4iii | 87.18 (7) | N2—C3—H3A | 109.4 |
| O2—S1—O3 | 113.85 (16) | C2iii—C3—H3A | 109.4 |
| O2—S1—O1 | 113.13 (14) | H3B—C3—H3A | 108.0 |
| O3—S1—O1 | 110.65 (15) | N2—C4—C1iii | 111.3 (3) |
| O2—S1—C6 | 105.35 (16) | N2—C4—H4A | 109.4 |
| O3—S1—C6 | 107.02 (16) | C1iii—C4—H4A | 109.4 |
| O1—S1—C6 | 106.21 (16) | N2—C4—H4B | 109.4 |
| C8—O4—H4 | 109.5 | C1iii—C4—H4B | 109.4 |
| H5C—O5—H5D | 105 (4) | H4A—C4—H4B | 108.0 |
| H6A—O6—H6C | 103 (3) | N1—C5—C6 | 113.1 (3) |
| H7C—O7—H7D | 113 (4) | N1—C5—H5B | 109.0 |
| C5—N1—C2 | 107.1 (3) | C6—C5—H5B | 109.0 |
| C5—N1—C1 | 109.9 (3) | N1—C5—H5A | 109.0 |
| C2—N1—C1 | 108.2 (3) | C6—C5—H5A | 109.0 |
| C5—N1—Ag1 | 108.4 (2) | H5B—C5—H5A | 107.8 |
| C2—N1—Ag1 | 111.9 (2) | C5—C6—S1 | 112.6 (2) |
| C1—N1—Ag1 | 111.2 (2) | C5—C6—H6D | 109.1 |
| C7—N2—C3 | 110.0 (3) | S1—C6—H6D | 109.1 |
| C7—N2—C4 | 108.8 (3) | C5—C6—H6B | 109.1 |
| C3—N2—C4 | 107.2 (3) | S1—C6—H6B | 109.1 |
| C7—N2—Ag1 | 108.3 (2) | H6D—C6—H6B | 107.8 |
| C3—N2—Ag1 | 112.1 (2) | N2—C7—C8 | 113.8 (3) |
| C4—N2—Ag1 | 110.4 (2) | N2—C7—H7B | 108.8 |
| N1—C1—C4ii | 111.7 (3) | C8—C7—H7B | 108.8 |
| N1—C1—H1B | 109.3 | N2—C7—H7A | 108.8 |
| C4ii—C1—H1B | 109.3 | C8—C7—H7A | 108.8 |
| N1—C1—H1A | 109.3 | H7B—C7—H7A | 107.7 |
| C4ii—C1—H1A | 109.3 | O4—C8—C7 | 111.4 (3) |
| H1B—C1—H1A | 108.0 | O4—C8—H8B | 109.4 |
| N1—C2—C3ii | 112.0 (3) | C7—C8—H8B | 109.4 |
| N1—C2—H2B | 109.2 | O4—C8—H8A | 109.4 |
| C3ii—C2—H2B | 109.2 | C7—C8—H8A | 109.4 |
| N1—C2—H2A | 109.2 | H8B—C8—H8A | 108.0 |
| N2—Ag1—N1—C5 | 130.6 (5) | C7—N2—C4—C1iii | −177.5 (3) |
| N2—Ag1—N1—C2 | 12.7 (6) | C3—N2—C4—C1iii | −58.5 (4) |
| N2—Ag1—N1—C1 | −108.5 (5) | Ag1—N2—C4—C1iii | 63.8 (3) |
| N1—Ag1—N2—C7 | −131.4 (5) | C2—N1—C5—C6 | −179.8 (3) |
| N1—Ag1—N2—C3 | 107.1 (5) | C1—N1—C5—C6 | −62.4 (4) |
| N1—Ag1—N2—C4 | −12.4 (6) | Ag1—N1—C5—C6 | 59.3 (3) |
| C5—N1—C1—C4ii | −172.7 (3) | N1—C5—C6—S1 | −176.3 (2) |
| C2—N1—C1—C4ii | −56.0 (4) | O2—S1—C6—C5 | −175.8 (2) |
| Ag1—N1—C1—C4ii | 67.3 (3) | O3—S1—C6—C5 | 62.7 (3) |
| C5—N1—C2—C3ii | 174.6 (3) | O1—S1—C6—C5 | −55.5 (3) |
| C1—N1—C2—C3ii | 56.1 (4) | C3—N2—C7—C8 | 74.0 (4) |
| Ag1—N1—C2—C3ii | −66.7 (3) | C4—N2—C7—C8 | −168.8 (3) |
| C7—N2—C3—C2iii | 176.5 (3) | Ag1—N2—C7—C8 | −48.8 (3) |
| C4—N2—C3—C2iii | 58.4 (4) | N2—C7—C8—O4 | 61.9 (4) |
| Ag1—N2—C3—C2iii | −62.9 (3) |
| H··· | ||||
| O7—H7C···O5iv | 0.85 (2) | 1.96 (2) | 2.777 (4) | 161 (4) |
| O6—H6A···O3v | 0.84 (2) | 1.88 (2) | 2.706 (4) | 166 (4) |
| O6—H6C···O1vi | 0.86 (2) | 2.02 (2) | 2.868 (4) | 169 (4) |
| O5—H5C···O7vii | 0.85 (2) | 2.01 (2) | 2.834 (4) | 163 (5) |
| O5—H5D···O6viii | 0.86 (2) | 2.02 (2) | 2.864 (4) | 171 (4) |
| O4—H4···O6viii | 0.84 | 1.89 | 2.726 (4) | 178 |
| Ag1—N1 | 2.266 (3) |
| Ag1—N2 | 2.280 (3) |
| Ag1—O2i | 2.666 (2) |
| Ag1—O4 | 2.581 (2) |
| N1—Ag1—N2 | 167.73 (11) |
| N1—Ag1—O2i | 92.58 (8) |
| N1—Ag1—O4 | 115.41 (8) |
| N2ii—Ag1—O2i | 94.22 (9) |
| N2—Ag1—O4 | 75.16 (9) |
| O2i—Ag1—O4ii | 87.18 (7) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O7—H7 | 0.85 (2) | 1.96 (2) | 2.777 (4) | 161 (4) |
| O6—H6 | 0.84 (2) | 1.88 (2) | 2.706 (4) | 166 (4) |
| O6—H6 | 0.86 (2) | 2.02 (2) | 2.868 (4) | 169 (4) |
| O5—H5 | 0.85 (2) | 2.01 (2) | 2.834 (4) | 163 (5) |
| O5—H5 | 0.86 (2) | 2.02 (2) | 2.864 (4) | 171 (4) |
| O4—H4⋯O6vii | 0.84 | 1.89 | 2.726 (4) | 178 |
Symmetry codes: (iii) ; (iv) ; (v) ; (vi) ; (vii) .