Literature DB >> 22058732

N,N-Dimethyl-5-nitro-N,N-diphenyl-pyrimidine-4,6-diamine.

Fuqiang Shi1, Li-Hong Zhu, Long Zhang, Ya-Feng Li.   

Abstract

In the title compound, C(18)H(17)N(5)O(2), the pyrimidine ring makes dihedral angles of 66.09 (12), 71.39 (13) and 56.7 (3)° with two phenyl rings and the nitro group, respectively. The dihedral angle between the two phenyl rings is 44.05 (14)°.

Entities:  

Year:  2011        PMID: 22058732      PMCID: PMC3201557          DOI: 10.1107/S1600536811035094

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyrimidine diamines, see: Barillari et al. (2001 ▶); Che et al. (2008 ▶); Itoh et al. (2004 ▶); Koppel & Robins (1958 ▶); Shi et al. (2011 ▶).

Experimental

Crystal data

C18H17N5O2 M = 335.37 Monoclinic, a = 10.794 (2) Å b = 7.0019 (14) Å c = 23.650 (6) Å β = 109.02 (3)° V = 1689.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.50 × 0.12 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.956, T max = 0.991 15784 measured reflections 3843 independent reflections 2018 reflections with I > 2σ(I) R int = 0.108

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.146 S = 1.05 3843 reflections 228 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2000 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811035094/is2768sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811035094/is2768Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811035094/is2768Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17N5O2F(000) = 704
Mr = 335.37Dx = 1.318 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 500 reflections
a = 10.794 (2) Åθ = 3.1–27.5°
b = 7.0019 (14) ŵ = 0.09 mm1
c = 23.650 (6) ÅT = 293 K
β = 109.02 (3)°Block, colorless
V = 1689.8 (6) Å30.50 × 0.12 × 0.10 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer3843 independent reflections
Radiation source: fine-focus sealed tube2018 reflections with I > 2σ(I)
graphiteRint = 0.108
Detector resolution: 10.00 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −14→13
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −9→9
Tmin = 0.956, Tmax = 0.991l = −30→30
15784 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0524P)2 + 0.0764P] where P = (Fo2 + 2Fc2)/3
3843 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.84317 (18)0.0703 (3)0.35192 (9)0.0577 (6)
O20.85674 (17)0.2808 (3)0.42079 (8)0.0586 (6)
N10.5774 (2)0.2175 (3)0.41820 (9)0.0435 (6)
N20.45045 (19)0.3519 (3)0.32882 (10)0.0434 (6)
N30.52690 (19)0.3954 (3)0.24557 (9)0.0412 (5)
N40.7997 (2)0.2043 (3)0.37282 (10)0.0424 (6)
N50.74616 (19)0.3627 (3)0.25459 (9)0.0393 (5)
C10.7275 (3)−0.2635 (4)0.44234 (13)0.0553 (8)
H10.7216−0.37820.42180.066*
C20.8135 (3)−0.2471 (5)0.49962 (14)0.0639 (9)
H20.8663−0.34980.51760.077*
C30.8210 (3)−0.0796 (5)0.53010 (13)0.0678 (10)
H30.8784−0.06920.56900.081*
C40.6587 (2)0.0578 (4)0.44551 (10)0.0387 (6)
C50.6500 (3)−0.1108 (4)0.41512 (11)0.0446 (7)
H50.5921−0.12240.37630.054*
C60.7441 (3)0.0745 (4)0.50349 (12)0.0562 (8)
H60.74960.18850.52430.067*
C70.4741 (3)0.2699 (5)0.44293 (13)0.0705 (10)
H7A0.45310.40280.43540.085*
H7B0.50410.24700.48530.085*
H7C0.39750.19430.42430.085*
C80.6703 (2)0.2779 (3)0.33805 (10)0.0338 (6)
C90.5681 (2)0.2799 (3)0.36205 (11)0.0362 (6)
C100.6494 (2)0.3447 (3)0.27970 (11)0.0359 (6)
C110.4380 (2)0.3965 (4)0.27283 (13)0.0456 (7)
H110.35450.43410.24930.055*
C120.8912 (3)0.5770 (4)0.32865 (12)0.0461 (7)
H120.81810.64420.33030.055*
C130.9840 (3)0.3278 (4)0.28633 (12)0.0474 (7)
H130.97420.22560.26010.057*
C141.0143 (3)0.6310 (4)0.36414 (13)0.0573 (8)
H141.02460.73320.39040.069*
C151.1078 (3)0.3861 (4)0.32153 (13)0.0573 (8)
H151.18150.32410.31840.069*
C161.1223 (3)0.5339 (5)0.36078 (13)0.0604 (9)
H161.20560.56900.38530.072*
C170.8759 (2)0.4228 (3)0.29054 (10)0.0365 (6)
C180.7094 (3)0.3940 (4)0.19040 (10)0.0503 (7)
H18A0.65090.29450.16970.060*
H18B0.78650.39270.17860.060*
H18C0.66640.51540.18050.060*
U11U22U33U12U13U23
O10.0466 (12)0.0511 (12)0.0785 (14)0.0176 (10)0.0247 (11)0.0139 (11)
O20.0418 (11)0.0717 (14)0.0505 (11)−0.0089 (10)−0.0010 (9)0.0050 (11)
N10.0423 (12)0.0468 (13)0.0451 (12)0.0077 (11)0.0194 (10)0.0064 (11)
N20.0315 (12)0.0430 (13)0.0557 (14)0.0047 (10)0.0143 (10)0.0090 (11)
N30.0313 (12)0.0410 (12)0.0469 (12)0.0030 (10)0.0066 (10)0.0064 (10)
N40.0323 (12)0.0434 (14)0.0507 (14)0.0013 (11)0.0126 (11)0.0124 (12)
N50.0314 (11)0.0470 (13)0.0389 (12)0.0007 (10)0.0108 (10)0.0015 (10)
C10.065 (2)0.0434 (16)0.0620 (18)0.0039 (15)0.0270 (16)0.0043 (15)
C20.059 (2)0.064 (2)0.066 (2)0.0128 (17)0.0162 (16)0.0262 (18)
C30.058 (2)0.084 (2)0.0471 (17)−0.0004 (19)−0.0025 (15)0.0157 (18)
C40.0346 (14)0.0434 (15)0.0364 (13)−0.0024 (12)0.0091 (11)0.0021 (12)
C50.0439 (15)0.0456 (17)0.0420 (14)−0.0041 (13)0.0107 (12)0.0034 (13)
C60.0603 (19)0.0576 (19)0.0424 (15)−0.0027 (15)0.0054 (14)−0.0024 (14)
C70.069 (2)0.092 (2)0.0630 (19)0.0289 (19)0.0377 (17)0.0118 (18)
C80.0234 (12)0.0313 (13)0.0417 (14)0.0007 (10)0.0037 (11)0.0031 (11)
C90.0312 (13)0.0316 (13)0.0450 (14)0.0009 (11)0.0112 (12)−0.0002 (12)
C100.0302 (13)0.0311 (13)0.0424 (14)−0.0017 (11)0.0063 (12)−0.0019 (11)
C110.0287 (14)0.0426 (16)0.0610 (18)0.0040 (12)0.0087 (13)0.0123 (14)
C120.0433 (16)0.0426 (15)0.0566 (16)−0.0036 (13)0.0219 (13)−0.0039 (14)
C130.0416 (15)0.0460 (16)0.0568 (16)0.0059 (13)0.0188 (13)−0.0010 (13)
C140.059 (2)0.0513 (17)0.0600 (18)−0.0148 (16)0.0176 (15)−0.0084 (15)
C150.0347 (15)0.064 (2)0.073 (2)0.0080 (15)0.0174 (15)0.0161 (17)
C160.0452 (18)0.068 (2)0.0580 (18)−0.0170 (17)0.0033 (15)0.0101 (17)
C170.0321 (13)0.0390 (14)0.0393 (13)−0.0003 (12)0.0129 (11)0.0038 (12)
C180.0465 (16)0.0653 (19)0.0403 (15)0.0101 (15)0.0157 (13)0.0026 (14)
O1—N41.223 (3)C5—H50.9300
O2—N41.224 (3)C6—H60.9300
N1—C91.370 (3)C7—H7A0.9600
N1—C41.438 (3)C7—H7B0.9600
N1—C71.464 (3)C7—H7C0.9600
N2—C111.324 (3)C8—C91.395 (3)
N2—C91.355 (3)C8—C101.404 (3)
N3—C111.319 (3)C11—H110.9300
N3—C101.353 (3)C12—C141.374 (4)
N4—C81.464 (3)C12—C171.382 (3)
N5—C101.366 (3)C12—H120.9300
N5—C171.444 (3)C13—C171.375 (4)
N5—C181.455 (3)C13—C151.385 (4)
C1—C21.375 (4)C13—H130.9300
C1—C51.381 (4)C14—C161.374 (4)
C1—H10.9300C14—H140.9300
C2—C31.365 (4)C15—C161.365 (4)
C2—H20.9300C15—H150.9300
C3—C61.382 (4)C16—H160.9300
C3—H30.9300C18—H18A0.9600
C4—C51.369 (3)C18—H18B0.9600
C4—C61.386 (3)C18—H18C0.9600
C9—N1—C4121.6 (2)C9—C8—N4120.7 (2)
C9—N1—C7118.9 (2)C10—C8—N4119.2 (2)
C4—N1—C7116.6 (2)N2—C9—N1116.1 (2)
C11—N2—C9116.0 (2)N2—C9—C8118.9 (2)
C11—N3—C10115.8 (2)N1—C9—C8125.0 (2)
O1—N4—O2124.5 (2)N3—C10—N5117.0 (2)
O1—N4—C8117.7 (2)N3—C10—C8119.1 (2)
O2—N4—C8117.8 (2)N5—C10—C8123.9 (2)
C10—N5—C17120.2 (2)N3—C11—N2129.4 (2)
C10—N5—C18118.7 (2)N3—C11—H11115.3
C17—N5—C18116.9 (2)N2—C11—H11115.3
C2—C1—C5120.4 (3)C14—C12—C17120.0 (3)
C2—C1—H1119.8C14—C12—H12120.0
C5—C1—H1119.8C17—C12—H12120.0
C3—C2—C1119.8 (3)C17—C13—C15119.3 (3)
C3—C2—H2120.1C17—C13—H13120.4
C1—C2—H2120.1C15—C13—H13120.4
C2—C3—C6120.5 (3)C16—C14—C12119.9 (3)
C2—C3—H3119.8C16—C14—H14120.0
C6—C3—H3119.8C12—C14—H14120.0
C5—C4—C6120.1 (2)C16—C15—C13120.5 (3)
C5—C4—N1120.5 (2)C16—C15—H15119.8
C6—C4—N1119.4 (2)C13—C15—H15119.8
C4—C5—C1119.7 (2)C15—C16—C14120.2 (3)
C4—C5—H5120.1C15—C16—H16119.9
C1—C5—H5120.1C14—C16—H16119.9
C3—C6—C4119.5 (3)C13—C17—C12120.1 (2)
C3—C6—H6120.3C13—C17—N5120.0 (2)
C4—C6—H6120.3C12—C17—N5119.9 (2)
N1—C7—H7A109.5N5—C18—H18A109.5
N1—C7—H7B109.5N5—C18—H18B109.5
H7A—C7—H7B109.5H18A—C18—H18B109.5
N1—C7—H7C109.5N5—C18—H18C109.5
H7A—C7—H7C109.5H18A—C18—H18C109.5
H7B—C7—H7C109.5H18B—C18—H18C109.5
C9—C8—C10120.1 (2)
  3 in total

1.  Synthesis of novel pyrimidine fused 8-membered heterocycles via iminium ion cyclization reactions.

Authors:  Xin Che; Lianyou Zheng; Qun Dang; Xu Bai
Journal:  J Org Chem       Date:  2008-01-08       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  6-Chloro-N-methyl-N-phenyl-pyrimidine-4,5-diamine.

Authors:  Fuqiang Shi; Li-Hong Zhu; Long Zhang; Ya-Feng Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  3 in total

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