| Literature DB >> 22091109 |
Fuqiang Shi1, Li-Hong Zhu, Long Zhang, Ya-Feng Li.
Abstract
In the title compound, C(11)H(11)ClN(4), the dihedral angle between the aromatic rings is 66.47 (8)°. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, generating C(5) chains propagating in [010]. Slipped aromatic π-π stacking between centrosymmetrically related pairs of pyrim-idine rings also occurs [centroid-centroid separation = 3.7634 (12)Å and slippage = 1.715 Å].Entities:
Year: 2011 PMID: 22091109 PMCID: PMC3213532 DOI: 10.1107/S1600536811028303
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H11ClN4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1000 reflections |
| θ = 3.1–27.5° | |
| µ = 0.31 mm−1 | |
| β = 109.63 (3)° | Block, colorless |
| 0.45 × 0.36 × 0.33 mm | |
| Rigaku R-AXIS RAPID diffractometer | 2588 independent reflections |
| Radiation source: fine-focus sealed tube | 1983 reflections with |
| graphite | |
| Detector resolution: 10.00 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 10835 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2588 reflections | (Δ/σ)max < 0.001 |
| 146 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.39218 (4) | 0.36966 (4) | 0.22870 (4) | 0.06006 (16) | |
| N1 | 0.52906 (15) | 0.54876 (12) | 0.14917 (12) | 0.0536 (3) | |
| N2 | 0.74328 (16) | 0.50645 (12) | 0.10019 (11) | 0.0533 (3) | |
| N3 | 0.85704 (14) | 0.29788 (13) | 0.11914 (11) | 0.0515 (3) | |
| N4 | 0.64945 (17) | 0.20317 (13) | 0.22608 (13) | 0.0607 (4) | |
| H4A | 0.5861 | 0.1794 | 0.2571 | 0.073* | |
| H4B | 0.7179 | 0.1483 | 0.2243 | 0.073* | |
| C1 | 0.53371 (16) | 0.42063 (14) | 0.18003 (12) | 0.0439 (3) | |
| C2 | 0.6380 (2) | 0.58510 (16) | 0.11281 (15) | 0.0590 (4) | |
| H2 | 0.6410 | 0.6752 | 0.0941 | 0.071* | |
| C3 | 0.74410 (16) | 0.37803 (13) | 0.12985 (12) | 0.0436 (3) | |
| C4 | 0.64133 (15) | 0.32788 (13) | 0.17980 (11) | 0.0411 (3) | |
| C5 | 0.83458 (16) | 0.15897 (14) | 0.08849 (12) | 0.0443 (3) | |
| C6 | 0.70775 (18) | 0.11594 (16) | 0.00632 (14) | 0.0529 (4) | |
| H6 | 0.6337 | 0.1773 | −0.0293 | 0.064* | |
| C7 | 0.6902 (2) | −0.01899 (18) | −0.02337 (15) | 0.0645 (5) | |
| H7 | 0.6035 | −0.0482 | −0.0777 | 0.077* | |
| C8 | 0.8007 (2) | −0.10947 (17) | 0.02737 (17) | 0.0659 (5) | |
| H8 | 0.7892 | −0.1997 | 0.0070 | 0.079* | |
| C9 | 0.9276 (2) | −0.0667 (2) | 0.10786 (17) | 0.0731 (5) | |
| H9 | 1.0029 | −0.1277 | 0.1416 | 0.088* | |
| C10 | 0.9443 (2) | 0.06674 (19) | 0.13924 (15) | 0.0627 (4) | |
| H10 | 1.0302 | 0.0948 | 0.1950 | 0.075* | |
| C11 | 0.9716 (2) | 0.36428 (19) | 0.0848 (2) | 0.0854 (7) | |
| H11A | 0.9328 | 0.3842 | 0.0061 | 0.128* | |
| H11B | 1.0556 | 0.3058 | 0.0994 | 0.128* | |
| H11C | 1.0013 | 0.4462 | 0.1263 | 0.128* |
| Cl1 | 0.0518 (2) | 0.0508 (2) | 0.0909 (3) | −0.00514 (16) | 0.0415 (2) | −0.00430 (18) |
| N1 | 0.0596 (8) | 0.0419 (7) | 0.0655 (8) | 0.0004 (6) | 0.0290 (7) | −0.0013 (5) |
| N2 | 0.0625 (8) | 0.0450 (7) | 0.0612 (8) | −0.0097 (6) | 0.0322 (7) | −0.0021 (5) |
| N3 | 0.0441 (7) | 0.0521 (7) | 0.0666 (8) | −0.0087 (5) | 0.0294 (6) | −0.0103 (6) |
| N4 | 0.0722 (9) | 0.0451 (7) | 0.0856 (10) | 0.0066 (6) | 0.0541 (9) | 0.0102 (6) |
| C1 | 0.0441 (7) | 0.0418 (7) | 0.0507 (8) | −0.0071 (6) | 0.0225 (7) | −0.0064 (6) |
| C2 | 0.0754 (11) | 0.0386 (7) | 0.0744 (11) | −0.0032 (7) | 0.0400 (10) | 0.0019 (7) |
| C3 | 0.0439 (7) | 0.0441 (7) | 0.0461 (7) | −0.0073 (6) | 0.0195 (6) | −0.0064 (6) |
| C4 | 0.0426 (7) | 0.0372 (7) | 0.0457 (7) | −0.0068 (5) | 0.0180 (6) | −0.0057 (5) |
| C5 | 0.0432 (7) | 0.0482 (8) | 0.0464 (7) | 0.0000 (6) | 0.0215 (6) | −0.0025 (6) |
| C6 | 0.0468 (8) | 0.0577 (9) | 0.0529 (8) | 0.0021 (7) | 0.0148 (7) | −0.0053 (7) |
| C7 | 0.0640 (11) | 0.0676 (11) | 0.0659 (11) | −0.0135 (8) | 0.0272 (9) | −0.0210 (8) |
| C8 | 0.0855 (14) | 0.0476 (9) | 0.0830 (13) | −0.0023 (9) | 0.0525 (12) | −0.0074 (8) |
| C9 | 0.0815 (13) | 0.0634 (11) | 0.0800 (13) | 0.0262 (10) | 0.0348 (11) | 0.0136 (9) |
| C10 | 0.0518 (9) | 0.0723 (11) | 0.0595 (10) | 0.0099 (8) | 0.0126 (8) | 0.0002 (8) |
| C11 | 0.0773 (13) | 0.0696 (12) | 0.140 (2) | −0.0238 (10) | 0.0768 (15) | −0.0253 (12) |
| Cl1—C1 | 1.7440 (14) | C5—C6 | 1.377 (2) |
| N1—C2 | 1.326 (2) | C5—C10 | 1.381 (2) |
| N1—C1 | 1.3296 (19) | C6—C7 | 1.389 (2) |
| N2—C2 | 1.329 (2) | C6—H6 | 0.9300 |
| N2—C3 | 1.3309 (18) | C7—C8 | 1.374 (3) |
| N3—C3 | 1.3876 (18) | C7—H7 | 0.9300 |
| N3—C5 | 1.4320 (19) | C8—C9 | 1.367 (3) |
| N3—C11 | 1.467 (2) | C8—H8 | 0.9300 |
| N4—C4 | 1.3633 (18) | C9—C10 | 1.379 (3) |
| N4—H4A | 0.8600 | C9—H9 | 0.9300 |
| N4—H4B | 0.8600 | C10—H10 | 0.9300 |
| C1—C4 | 1.3850 (19) | C11—H11A | 0.9600 |
| C2—H2 | 0.9300 | C11—H11B | 0.9600 |
| C3—C4 | 1.4282 (18) | C11—H11C | 0.9600 |
| C2—N1—C1 | 114.28 (13) | C10—C5—N3 | 119.55 (15) |
| C2—N2—C3 | 117.64 (12) | C5—C6—C7 | 120.07 (16) |
| C3—N3—C5 | 121.99 (11) | C5—C6—H6 | 120.0 |
| C3—N3—C11 | 117.18 (13) | C7—C6—H6 | 120.0 |
| C5—N3—C11 | 114.41 (12) | C8—C7—C6 | 120.14 (17) |
| C4—N4—H4A | 120.0 | C8—C7—H7 | 119.9 |
| C4—N4—H4B | 120.0 | C6—C7—H7 | 119.9 |
| H4A—N4—H4B | 120.0 | C9—C8—C7 | 119.88 (16) |
| N1—C1—C4 | 126.12 (12) | C9—C8—H8 | 120.1 |
| N1—C1—Cl1 | 115.43 (10) | C7—C8—H8 | 120.1 |
| C4—C1—Cl1 | 118.42 (11) | C8—C9—C10 | 120.19 (17) |
| N1—C2—N2 | 126.91 (14) | C8—C9—H9 | 119.9 |
| N1—C2—H2 | 116.5 | C10—C9—H9 | 119.9 |
| N2—C2—H2 | 116.5 | C9—C10—C5 | 120.57 (18) |
| N2—C3—N3 | 117.05 (12) | C9—C10—H10 | 119.7 |
| N2—C3—C4 | 121.39 (13) | C5—C10—H10 | 119.7 |
| N3—C3—C4 | 121.33 (12) | N3—C11—H11A | 109.5 |
| N4—C4—C1 | 122.70 (12) | N3—C11—H11B | 109.5 |
| N4—C4—C3 | 124.08 (13) | H11A—C11—H11B | 109.5 |
| C1—C4—C3 | 113.19 (12) | N3—C11—H11C | 109.5 |
| C6—C5—C10 | 119.13 (15) | H11A—C11—H11C | 109.5 |
| C6—C5—N3 | 121.28 (14) | H11B—C11—H11C | 109.5 |
| C2—N1—C1—C4 | 1.8 (2) | N3—C3—C4—N4 | 3.9 (2) |
| C2—N1—C1—Cl1 | 179.82 (12) | N2—C3—C4—C1 | 7.6 (2) |
| C1—N1—C2—N2 | 3.2 (3) | N3—C3—C4—C1 | −178.05 (13) |
| C3—N2—C2—N1 | −2.2 (3) | C3—N3—C5—C6 | 41.5 (2) |
| C2—N2—C3—N3 | −178.27 (15) | C11—N3—C5—C6 | −109.51 (18) |
| C2—N2—C3—C4 | −3.7 (2) | C3—N3—C5—C10 | −140.87 (15) |
| C5—N3—C3—N2 | −145.53 (14) | C11—N3—C5—C10 | 68.1 (2) |
| C11—N3—C3—N2 | 4.8 (2) | C10—C5—C6—C7 | 1.0 (2) |
| C5—N3—C3—C4 | 39.9 (2) | N3—C5—C6—C7 | 178.65 (13) |
| C11—N3—C3—C4 | −169.80 (17) | C5—C6—C7—C8 | −1.5 (2) |
| N1—C1—C4—N4 | 171.27 (15) | C6—C7—C8—C9 | 0.5 (3) |
| Cl1—C1—C4—N4 | −6.7 (2) | C7—C8—C9—C10 | 0.8 (3) |
| N1—C1—C4—C3 | −6.8 (2) | C8—C9—C10—C5 | −1.2 (3) |
| Cl1—C1—C4—C3 | 175.23 (10) | C6—C5—C10—C9 | 0.3 (2) |
| N2—C3—C4—N4 | −170.43 (14) | N3—C5—C10—C9 | −177.38 (14) |
| H··· | ||||
| N4—H4A···N1i | 0.86 | 2.28 | 3.0993 (18) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4 | 0.86 | 2.28 | 3.0993 (18) | 159 |
Symmetry code: (i) .