Literature DB >> 22049267

Commentary on "Principal stratification - a goal or a tool?" by Judea Pearl.

Peter B Gilbert1, Michael G Hudgens, Julian Wolfson.   

Abstract

This commentary takes up Pearl's welcome challenge to clearly articulate the scientific value of principal stratification estimands that we and colleagues have investigated, in the area of randomized placebo-controlled preventive vaccine efficacy trials, especially trials of HIV vaccines. After briefly arguing that certain principal stratification estimands for studying vaccine effects on post-infection outcomes are of genuine scientific interest, the bulk of our commentary argues that the "causal effect predictiveness" (CEP) principal stratification estimand for evaluating immune biomarkers as surrogate endpoints is not of ultimate scientific interest, because it evaluates surrogacy restricted to the setting of a particular vaccine efficacy trial, but is nevertheless useful for guiding the selection of primary immune biomarker endpoints in Phase I/II vaccine trials and for facilitating assessment of transportability/bridging surrogacy.

Keywords:  causal inference; principal stratification; vaccine trial

Mesh:

Year:  2011        PMID: 22049267      PMCID: PMC3204668          DOI: 10.2202/1557-4679.1341

Source DB:  PubMed          Journal:  Int J Biostat        ISSN: 1557-4679            Impact factor:   0.968


  23 in total

1.  Principal stratification in causal inference.

Authors:  Constantine E Frangakis; Donald B Rubin
Journal:  Biometrics       Date:  2002-03       Impact factor: 2.571

Review 2.  Correlates of protection induced by vaccination.

Authors:  Stanley A Plotkin
Journal:  Clin Vaccine Immunol       Date:  2010-05-12

3.  Identifiability and exchangeability for direct and indirect effects.

Authors:  J M Robins; S Greenland
Journal:  Epidemiology       Date:  1992-03       Impact factor: 4.822

4.  Response to Andrew Dunning's comment on 'evaluating a surrogate endpoint at three levels, with application to vaccine development'.

Authors:  Peter B Gilbert; Li Qin; Steven G Self
Journal:  Stat Med       Date:  2009-02-15       Impact factor: 2.373

Review 5.  Vaccines: correlates of vaccine-induced immunity.

Authors:  Stanley A Plotkin
Journal:  Clin Infect Dis       Date:  2008-08-01       Impact factor: 9.079

6.  Semiparametric estimation of the average causal effect of treatment on an outcome measured after a postrandomization event, with missing outcome data.

Authors:  Peter B Gilbert; Yuying Jin
Journal:  Biostatistics       Date:  2009-10-08       Impact factor: 5.899

7.  A framework for assessing immunological correlates of protection in vaccine trials.

Authors:  Li Qin; Peter B Gilbert; Lawrence Corey; M Juliana McElrath; Steven G Self
Journal:  J Infect Dis       Date:  2007-10-02       Impact factor: 5.226

8.  Surrogate endpoints in clinical trials: definition and operational criteria.

Authors:  R L Prentice
Journal:  Stat Med       Date:  1989-04       Impact factor: 2.373

9.  Sensitivity analyses comparing time-to-event outcomes only existing in a subset selected postrandomization and relaxing monotonicity.

Authors:  Bryan E Shepherd; Peter B Gilbert; Charles T Dupont
Journal:  Biometrics       Date:  2010-11-29       Impact factor: 2.571

10.  On the analysis of viral load endpoints in HIV vaccine trials.

Authors:  Michael G Hudgens; Antje Hoering; Steven G Self
Journal:  Stat Med       Date:  2003-07-30       Impact factor: 2.373

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  11 in total

1.  The causal mediation formula--a guide to the assessment of pathways and mechanisms.

Authors:  Judea Pearl
Journal:  Prev Sci       Date:  2012-08

2.  Nomenclature for immune correlates of protection after vaccination.

Authors:  Stanley A Plotkin; Peter B Gilbert
Journal:  Clin Infect Dis       Date:  2012-03-20       Impact factor: 9.079

3.  Dealing with death when studying disease or physiological marker: the stochastic system approach to causality.

Authors:  Daniel Commenges
Journal:  Lifetime Data Anal       Date:  2018-11-17       Impact factor: 1.588

4.  Immune-correlates analysis of an HIV-1 vaccine efficacy trial.

Authors:  Barton F Haynes; Peter B Gilbert; M Juliana McElrath; Susan Zolla-Pazner; Georgia D Tomaras; S Munir Alam; David T Evans; David C Montefiori; Chitraporn Karnasuta; Ruengpueng Sutthent; Hua-Xin Liao; Anthony L DeVico; George K Lewis; Constance Williams; Abraham Pinter; Youyi Fong; Holly Janes; Allan DeCamp; Yunda Huang; Mangala Rao; Erik Billings; Nicos Karasavvas; Merlin L Robb; Viseth Ngauy; Mark S de Souza; Robert Paris; Guido Ferrari; Robert T Bailer; Kelly A Soderberg; Charla Andrews; Phillip W Berman; Nicole Frahm; Stephen C De Rosa; Michael D Alpert; Nicole L Yates; Xiaoying Shen; Richard A Koup; Punnee Pitisuttithum; Jaranit Kaewkungwal; Sorachai Nitayaphan; Supachai Rerks-Ngarm; Nelson L Michael; Jerome H Kim
Journal:  N Engl J Med       Date:  2012-04-05       Impact factor: 91.245

5.  A method to address between-subject heterogeneity for identification of principal surrogate markers in repeated low-dose challenge HIV vaccine studies.

Authors:  Andrew J Spieker; Ying Huang
Journal:  Stat Med       Date:  2017-07-31       Impact factor: 2.373

6.  Evaluation and comparison of predictive individual-level general surrogates.

Authors:  Erin E Gabriel; Michael C Sachs; M Elizabeth Halloran
Journal:  Biostatistics       Date:  2018-07-01       Impact factor: 5.899

7.  Surrogate Endpoint Evaluation: Principal Stratification Criteria and the Prentice Definition.

Authors:  Peter B Gilbert; Erin E Gabriel; Ying Huang; Ivan S F Chan
Journal:  J Causal Inference       Date:  2015-02-01

8.  Design and estimation for evaluating principal surrogate markers in vaccine trials.

Authors:  Ying Huang; Peter B Gilbert; Julian Wolfson
Journal:  Biometrics       Date:  2013-02-14       Impact factor: 2.571

9.  Fold rise in antibody titers by measured by glycoprotein-based enzyme-linked immunosorbent assay is an excellent correlate of protection for a herpes zoster vaccine, demonstrated via the vaccine efficacy curve.

Authors:  Peter B Gilbert; Erin E Gabriel; Xiaopeng Miao; Xiaoming Li; Shu-Chih Su; Janie Parrino; Ivan S F Chan
Journal:  J Infect Dis       Date:  2014-05-13       Impact factor: 5.226

10.  Efficient nonparametric inference on the effects of stochastic interventions under two-phase sampling, with applications to vaccine efficacy trials.

Authors:  Nima S Hejazi; Mark J van der Laan; Holly E Janes; Peter B Gilbert; David C Benkeser
Journal:  Biometrics       Date:  2020-09-28       Impact factor: 2.571

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