Literature DB >> 15291820

Analysis of the transcarbamoylation-dehydration reaction catalyzed by the hydrogenase maturation proteins HypF and HypE.

Melanie Blokesch1, Athanasios Paschos, Anette Bauer, Stefanie Reissmann, Nikola Drapal, August Böck.   

Abstract

The hydrogenase maturation proteins HypF and HypE catalyze the synthesis of the CN ligands of the active site iron of the NiFe-hydrogenases using carbamoylphosphate as a substrate. HypE protein from Escherichia coli was purified from a transformant overexpressing the hypE gene from a plasmid. Purified HypE in gel filtration experiments behaves predominantly as a monomer. It does not contain statistically significant amounts of metals or of cofactors absorbing in the UV and visible light range. The protein displays low intrinsic ATPase activity with ADP and phosphate as the products, the apparent K(m) being 25 micro m and the k(cat) 1.7 x 10(-3) s(-1). Removal of the C-terminal cysteine residue of HypE which accepts the carbamoyl moiety from HypF affected the K(m) (47 micro m) but not significantly the k(cat) (2.1 x 10(-3) s(-1)). During the carbamoyltransfer reaction, HypE and HypF enter a complex which is rather tight at stoichiometric ratios of the two proteins. A mutant HypE variant was generated by amino acid replacements in the nucleoside triphosphate binding region, which showed no intrinsic ATPase activity. The variant was active as an acceptor in the transcarbamoylation reaction but did not dehydrate the thiocarboxamide to the thiocyanate. The results obtained with the HypE variants and also with mutant HypF forms are integrated to explain the complex reaction pattern of protein HypF.

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Year:  2004        PMID: 15291820     DOI: 10.1111/j.1432-1033.2004.04280.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  21 in total

1.  Requirements for heterologous production of a complex metalloenzyme: the membrane-bound [NiFe] hydrogenase.

Authors:  Oliver Lenz; Andrea Gleiche; Angelika Strack; Bärbel Friedrich
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

Review 2.  Nickel-binding and accessory proteins facilitating Ni-enzyme maturation in Helicobacter pylori.

Authors:  Robert J Maier; Stéphane L Benoit; Susmitha Seshadri
Journal:  Biometals       Date:  2007-01-05       Impact factor: 2.949

3.  Crystallization and preliminary X-ray crystallographic studies of the [NiFe] hydrogenase maturation proteins HypC and HypD.

Authors:  Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-31

4.  Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1.

Authors:  Takayuki Arai; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-25

5.  Protein interactions and localization of the Escherichia coli accessory protein HypA during nickel insertion to [NiFe] hydrogenase.

Authors:  Kim C Chan Chung; Deborah B Zamble
Journal:  J Biol Chem       Date:  2011-10-20       Impact factor: 5.157

6.  Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases.

Authors:  Yasuhito Shomura; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2012-06-27       Impact factor: 5.157

7.  Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.

Authors:  Taiga Tominaga; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-22

8.  Preliminary characterization of two different crystal forms of acylphosphatase from the hyperthermophile archaeon Sulfolobus solfataricus.

Authors:  Simone Zuccotti; Camillo Rosano; Francesco Bemporad; Massimo Stefani; Martino Bolognesi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2004-12-24

9.  Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation.

Authors:  Taiga Tominaga; Satoshi Watanabe; Rie Matsumi; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

10.  Discovery of [NiFe] hydrogenase genes in metagenomic DNA: cloning and heterologous expression in Thiocapsa roseopersicina.

Authors:  Gergely Maróti; Yingkai Tong; Shibu Yooseph; Holly Baden-Tillson; Hamilton O Smith; Kornél L Kovács; Marvin Frazier; J Craig Venter; Qing Xu
Journal:  Appl Environ Microbiol       Date:  2009-07-24       Impact factor: 4.792

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