Literature DB >> 22046116

Teaching bioinformatics at the secondary school level.

Fran Lewitter, Philip E Bourne.   

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Year:  2011        PMID: 22046116      PMCID: PMC3203059          DOI: 10.1371/journal.pcbi.1002242

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


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Bioinformatics is now an integral part of biology and biological research. The field began with a few people from other disciplines teaching themselves and each other the techniques that are now considered commonplace. These pioneers then began graduate programs [1]–[3] to educate the next generation. Those early graduate students typically came as bench biologists or as computer scientists, both groups requiring significant time to “hybridize”. Not surprisingly, this then led to undergraduate majors in bioinformatics to better prepare students for graduate school and research careers in bioinformatics. In addition, teaching bioinformatics in undergraduate biology classes is also a priority [4], [5]. Through the Education section of PLoS Computational Biology we have tried to support this evolution through a collection of educational articles pertinent to the undergraduate level and beyond. It is only natural that we would take the next step [6]. We now introduce a subsection of the Education section with articles devoted to teaching bioinformatics in secondary schools that is derived from the work of the Education committee of the International Society for Computational Biology (ISCB), who identified a need to address the issue of incorporating bioinformatics into secondary school biology classes. They also recognized the interest among researchers to build and participate in outreach programs at the secondary school level given that many funding agencies worldwide encourage such a component in grant applications. To move the ball forward on secondary school bioinformatics education, at ISCB's 2010 international conference, Intelligent Systems in Molecular Biology (ISMB), the ISCB Education committee organized a half-day tutorial aimed at secondary school biology and chemistry teachers in the Boston area interested in learning about bioinformatics and how to include it in their curricula. The tutorial also attracted researchers involved in organizing or formulating outreach programs in their community. The main focus of the ISMB tutorial was the presentation of lesson plans by a secondary school teacher (David Form, a biology teacher at Nashoba Regional High School, Bolton, Massachusetts) who has successfully incorporated bioinformatics into his courses for more than five years. His is one example of such an effort and is embraced in the Ten Simple Rules and its supplementary material found in this issue. Also in this issue we have an article by Suzanne Gallagher and colleagues on the experience of teaching secondary school level bioinformatics in Boulder, Colorado. There are many examples of outreach efforts to high school students that we would like to feature in coming months, which incorporate bioinformatics into their programs (see Table 1).
Table 1

Examples of Online Resources and Outreach Programs.

Center for Computational Research at SUNY Buffalo http://www.ccr.buffalo.edu/display/WEB/Outreach
Cold Spring Harbor Laboratory Dolan Learning Center http://www.dnalc.org/programs/fieldtrips/hsbioinform.html
CusMiBio, University of Milan, Italy [9] http://www.cusmibio.unimi.it/english03.html
Harvard University Life Sciences/HHMI (see MicrobiologyLesson PlansRecreating the Tree of Life Using Bioinformatics) http://outreach.mcb.harvard.edu/materials.htm
International Society for Computational Biology http://www.iscb.org/high-schoolsecondary-school-resources
Netherlands Bioinformatics Centre http://www.bioinformaticsatschool.eu/
Northwest Association for Biomedical Research http://www.nwabr.org/education/itest.html
University of British Columbia: The Educational Facilities of the Michael Smith Labs http://www.bioteach.ubc.ca/tag/bioinformatics/ http://www.bioteach.ubc.ca/genetics-fieldtrips/
Washington University Saint Louis Science Outreach http://www.so.wustl.edu/
Whitehead Institute Bioinformatics Education Page http://jura.wi.mit.edu/bio/education/
There are many other examples of educators doing similar work in school districts worldwide. A recent issue of Briefings in Bioinformatics was dedicated to bioinformatics education [7] with a specific example of programs for secondary school students [8], [9].The ISCB Education committee is building a resource of information useful to secondary school teachers who would like to incorporate bioinformatics into their curriculum. In addition, the committee has begun to explore how to include bioinformatics in Advanced Placement courses and exams in the United States, which we also hope to feature in the Education section of the journal. We encourage feedback of any form, including comments on this editorial, and hearing about your experience teaching bioinformatics to secondary school students.
  9 in total

1.  University bioinformatics programs on the rise.

Authors:  R J Zauhar
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

2.  Bioinformatics education dissemination with an evolutionary problem solving perspective.

Authors:  John R Jungck; Samuel S Donovan; Anton E Weisstein; Noppadon Khiripet; Stephen J Everse
Journal:  Brief Bioinform       Date:  2010-10-29       Impact factor: 11.622

3.  Editorial: Bioinformatics education in the 21st century.

Authors:  Indra Neil Sarkar
Journal:  Brief Bioinform       Date:  2010-11       Impact factor: 11.622

4.  Hedgehogs, humans and high-school science. The benefits of involving high-school students in university research.

Authors:  Giulio Pavesi; Antonio Siccardi; Giovanna Viale; Cinzia Grazioli; Tiziana Calciolari; Maria Luisa Tenchini; Paolo Plevani
Journal:  EMBO Rep       Date:  2008-03       Impact factor: 8.807

5.  Bioinformatics in high school biology curricula: a study of state science standards.

Authors:  Stephen H Wefer; Keith Sheppard
Journal:  CBE Life Sci Educ       Date:  2008       Impact factor: 3.325

6.  Computing has changed biology--biology education must catch up.

Authors:  Pavel Pevzner; Ron Shamir
Journal:  Science       Date:  2009-07-31       Impact factor: 47.728

7.  A curriculum for bioinformatics: the time is ripe.

Authors:  R B Altman
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

8.  Incorporating genomics and bioinformatics across the life sciences curriculum.

Authors:  Jayna L Ditty; Christopher A Kvaal; Brad Goodner; Sharyn K Freyermuth; Cheryl Bailey; Robert A Britton; Stuart G Gordon; Sabine Heinhorst; Kelynne Reed; Zhaohui Xu; Erin R Sanders-Lorenz; Seth Axen; Edwin Kim; Mitrick Johns; Kathleen Scott; Cheryl A Kerfeld
Journal:  PLoS Biol       Date:  2010-08-10       Impact factor: 8.029

9.  Bioinformatics education--perspectives and challenges.

Authors:  Shoba Ranganathan
Journal:  PLoS Comput Biol       Date:  2005-11       Impact factor: 4.475

  9 in total
  6 in total

1.  A first attempt to bring computational biology into advanced high school biology classrooms.

Authors:  Suzanne Renick Gallagher; William Coon; Kristin Donley; Abby Scott; Debra S Goldberg
Journal:  PLoS Comput Biol       Date:  2011-10-27       Impact factor: 4.475

2.  Education in computational biology today and tomorrow.

Authors:  Joanne A Fox; B F Francis Ouellette
Journal:  PLoS Comput Biol       Date:  2013-12-12       Impact factor: 4.475

3.  Moving education forward, again!

Authors:  Fran Lewitter
Journal:  PLoS Comput Biol       Date:  2013-12-12       Impact factor: 4.475

4.  Design and implementation of a genomics field trip program aimed at secondary school students.

Authors:  Jennifer McQueen; Jody J Wright; Joanne A Fox
Journal:  PLoS Comput Biol       Date:  2012-08-30       Impact factor: 4.475

5.  Making authentic science accessible-the benefits and challenges of integrating bioinformatics into a high-school science curriculum.

Authors:  Yossy Machluf; Hadas Gelbart; Shifra Ben-Dor; Anat Yarden
Journal:  Brief Bioinform       Date:  2016-01-22       Impact factor: 11.622

6.  Error-Discovery Learning Boosts Student Engagement and Performance, while Reducing Student Attrition in a Bioinformatics Course.

Authors:  Christopher J Lee; Brit Toven-Lindsey; Casey Shapiro; Michael Soh; Sepideh Mazrouee; Marc Levis-Fitzgerald; Erin R Sanders
Journal:  CBE Life Sci Educ       Date:  2018-09       Impact factor: 3.325

  6 in total

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