Literature DB >> 22044994

Super-resolution surface mapping using the trajectories of molecular probes.

Robert Walder1, Nathaniel Nelson, Daniel K Schwartz.   

Abstract

The surface characterization of 'soft' materials presents a significant scientific challenge, particularly under 'wet' in situ conditions where a wide variety of non-covalent interactions may be relevant. Here we introduce a new chemical imaging method, MAPT (mapping using accumulated probe trajectories) that generates images of surface interactions by distributing different aspects of molecular probe trajectories into distinct locations and then combining many trajectories to generate spatial maps. The maps are super-resolution in nature, because they are accumulated from highly localized single-molecule observations. Unlike other super-resolution techniques, which report only photon or point counts, our analysis generates spatial maps of physical quantities (adsorption rate, desorption probability, local surface diffusion coefficient, surface coverage/occupancy) that are directly associated with the molecular interactions between the probe molecule and the surface. We demonstrate the feasibility of this characterization using a surface patterned with various degrees of hydrophobicity.

Year:  2011        PMID: 22044994     DOI: 10.1038/ncomms1530

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  23 in total

Review 1.  Fabrication of novel biomaterials through molecular self-assembly.

Authors:  Shuguang Zhang
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

2.  Mapping hydrophobicity at the nanoscale: applications to heterogeneous surfaces and proteins.

Authors:  Hari Acharya; Srivathsan Vembanur; Sumanth N Jamadagni; Shekhar Garde
Journal:  Faraday Discuss       Date:  2010       Impact factor: 4.008

3.  Hydrophobic interaction microscopy: mapping the solid/ liquid interface using amphiphilic probe molecules.

Authors:  Andrei Honciuc; Denver Jn Baptiste; Daniel K Schwartz
Journal:  Langmuir       Date:  2009-04-21       Impact factor: 3.882

4.  Spraying asymmetry into functional membranes layer-by-layer.

Authors:  Kevin C Krogman; Joseph L Lowery; Nicole S Zacharia; Gregory C Rutledge; Paula T Hammond
Journal:  Nat Mater       Date:  2009-04-19       Impact factor: 43.841

5.  Directed nanoparticle motion on an interfacial free energy gradient.

Authors:  Robert Walder; Andrei Honciuc; Daniel K Schwartz
Journal:  Langmuir       Date:  2010-02-02       Impact factor: 3.882

6.  Single-molecule observations of surfactant diffusion at the solution-solid interface.

Authors:  Andrei Honciuc; Adam W Harant; Daniel K Schwartz
Journal:  Langmuir       Date:  2008-05-20       Impact factor: 3.882

7.  Solvent dependence of the activation energy of attachment determined by single molecule observations of surfactant adsorption.

Authors:  Andrei Honciuc; Denver Jn Baptiste; Ian P Campbell; Daniel K Schwartz
Journal:  Langmuir       Date:  2009-07-07       Impact factor: 3.882

8.  Near-infrared optical sensors based on single-walled carbon nanotubes.

Authors:  Paul W Barone; Seunghyun Baik; Daniel A Heller; Michael S Strano
Journal:  Nat Mater       Date:  2004-12-12       Impact factor: 43.841

9.  Patterning reactive microdomains inside polydimethylsiloxane microchannels by trapping and melting functional polymer particles.

Authors:  Masashi Yamamoto; Masumi Yamada; Nobuhiro Nonaka; Shizuka Fukushima; Masahiro Yasuda; Minoru Seki
Journal:  J Am Chem Soc       Date:  2008-10-04       Impact factor: 15.419

10.  Probing hydrophobic interactions using trajectories of amphiphilic molecules at a hydrophobic/water interface.

Authors:  Andrei Honciuc; Daniel K Schwartz
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

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  9 in total

1.  Quantitative evaluation of software packages for single-molecule localization microscopy.

Authors:  Daniel Sage; Hagai Kirshner; Thomas Pengo; Nico Stuurman; Junhong Min; Suliana Manley; Michael Unser
Journal:  Nat Methods       Date:  2015-06-15       Impact factor: 28.547

2.  Unified superresolution experiments and stochastic theory provide mechanistic insight into protein ion-exchange adsorptive separations.

Authors:  Lydia Kisley; Jixin Chen; Andrea P Mansur; Bo Shuang; Katerina Kourentzi; Mohan-Vivekanandan Poongavanam; Wen-Hsiang Chen; Sagar Dhamane; Richard C Willson; Christy F Landes
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-23       Impact factor: 11.205

3.  Super-resolution mbPAINT for optical localization of single-stranded DNA.

Authors:  Jixin Chen; Alberto Bremauntz; Lydia Kisley; Bo Shuang; Christy F Landes
Journal:  ACS Appl Mater Interfaces       Date:  2013-09-27       Impact factor: 9.229

Review 4.  Identifying mechanisms of interfacial dynamics using single-molecule tracking.

Authors:  Mark Kastantin; Robert Walder; Daniel K Schwartz
Journal:  Langmuir       Date:  2012-07-11       Impact factor: 3.882

5.  Faster Surface Ligation Reactions Improve Immobilized Enzyme Structure and Activity.

Authors:  Andres F Chaparro Sosa; Riley M Bednar; Ryan A Mehl; Daniel K Schwartz; Joel L Kaar
Journal:  J Am Chem Soc       Date:  2021-04-29       Impact factor: 15.419

6.  Optical characterization of surface adlayers and their compositional demixing at the nanoscale.

Authors:  Limin Xiang; Michal Wojcik; Samuel J Kenny; Rui Yan; Seonah Moon; Wan Li; Ke Xu
Journal:  Nat Commun       Date:  2018-04-12       Impact factor: 14.919

7.  Antimicrobial peptide activity is anticorrelated with lipid a leaflet affinity.

Authors:  Nathaniel Nelson; Belita Opene; Robert K Ernst; Daniel K Schwartz
Journal:  PLoS One       Date:  2020-11-30       Impact factor: 3.240

8.  Single molecule tracking and analysis framework including theory-predicted parameter settings.

Authors:  Timo Kuhn; Johannes Hettich; Rubina Davtyan; J Christof M Gebhardt
Journal:  Sci Rep       Date:  2021-05-04       Impact factor: 4.379

9.  Egg white coagulum: a precisely tailorable membrane for biomimetic multilevel structured nanomaterials.

Authors:  Xiaolei Wang; Hui Zhu; Xuexia Liu; Fan Yang; Xiurong Yang
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

  9 in total

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