Literature DB >> 21043432

Mapping hydrophobicity at the nanoscale: applications to heterogeneous surfaces and proteins.

Hari Acharya1, Srivathsan Vembanur, Sumanth N Jamadagni, Shekhar Garde.   

Abstract

Approaches to quantify wetting at the macroscale do not translate to the nanoscale, highlighting the need for new methods for characterizing hydrophobicity at the small scale. We use extensive molecular simulations to study the hydration of homo and heterogeneous self-assembled monolayers (SAMs) and of protein surfaces. For homogeneous SAMs, new pressure-dependent analysis shows that water displays higher compressibility and enhanced density fluctuations near hydrophobic surfaces, which are gradually quenched with increasing hydrophilicity, consistent with our previous studies. Heterogeneous surfaces show an interesting context dependence--adding a single -OH group in a CH3 terminated SAM has a more dramatic effect on water in the vicinity compared to that of a single CH3 group in an -OH background. For mixed -CH3/-OH SAMs, this asymmetry leads to a non-linear dependence of hydrophobicity on the surface concentration. We also present preliminary results to map hydrophobicity of protein surfaces by monitoring local density fluctuations and binding of probe hydrophobic solutes. These molecular measures account for the behavior of protein's hydration water, and present a more refined picture of its hydrophobicity map. At least for one protein, hydrophobin-II, we show that the hydrophobicity map is different from that suggested by a commonly used hydropathy scale.

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Year:  2010        PMID: 21043432     DOI: 10.1039/b927019a

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  42 in total

1.  Super-resolution surface mapping using the trajectories of molecular probes.

Authors:  Robert Walder; Nathaniel Nelson; Daniel K Schwartz
Journal:  Nat Commun       Date:  2011-11-01       Impact factor: 14.919

2.  Evaporation rate of water in hydrophobic confinement.

Authors:  Sumit Sharma; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-05       Impact factor: 11.205

3.  Extended surfaces modulate hydrophobic interactions of neighboring solutes.

Authors:  Amish J Patel; Patrick Varilly; Sumanth N Jamadagni; Hari Acharya; Shekhar Garde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

4.  Molecular dynamics analysis of conserved hydrophobic and hydrophilic bond-interaction networks in ErbB family kinases.

Authors:  Andrew J Shih; Shannon E Telesco; Sung-Hee Choi; Mark A Lemmon; Ravi Radhakrishnan
Journal:  Biochem J       Date:  2011-06-01       Impact factor: 3.857

5.  On the cooperative formation of non-hydrogen-bonded water at molecular hydrophobic interfaces.

Authors:  Joel G Davis; Blake M Rankin; Kamil P Gierszal; Dor Ben-Amotz
Journal:  Nat Chem       Date:  2013-07-21       Impact factor: 24.427

6.  General hydrophobic interaction potential for surfactant/lipid bilayers from direct force measurements between light-modulated bilayers.

Authors:  Stephen H Donaldson; C Ted Lee; Bradley F Chmelka; Jacob N Israelachvili
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

7.  Protein aggregation in salt solutions.

Authors:  Miha Kastelic; Yurij V Kalyuzhnyi; Barbara Hribar-Lee; Ken A Dill; Vojko Vlachy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

8.  Affinity of small-molecule solutes to hydrophobic, hydrophilic, and chemically patterned interfaces in aqueous solution.

Authors:  Jacob I Monroe; Sally Jiao; R Justin Davis; Dennis Robinson Brown; Lynn E Katz; M Scott Shell
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

9.  Identifying hydrophobic protein patches to inform protein interaction interfaces.

Authors:  Nicholas B Rego; Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

10.  Oxygen attachment on alkanethiolate SAMs induced by low-energy electron irradiation.

Authors:  Sylvain Massey; Andrew D Bass; Marie Steffenhagen; Léon Sanche
Journal:  Langmuir       Date:  2013-04-15       Impact factor: 3.882

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