Literature DB >> 22022203

Microscopic properties of nanopore water from its time-dependent dielectric response.

Jürgen Köfinger1, Christoph Dellago.   

Abstract

We present a simple kinetic model for the orientational dynamics of a chain of hydrogen-bonded molecules due to the diffusion of orientational defects. We derive an event-driven algorithm which allows us to do kinetic simulations for chains from nanoscopic to macroscopic lengths, spanning huge orders of magnitude in time. Our simulations and analytical calculations show that nanopore water exhibits Debye behavior arising from the diffusive dynamics of orientational defects. For the limits of short and long chains we derive analytical expressions for the relaxation times which allow to extract the diffusion constant, the effective interaction, and the excitation energy of these defects from dielectric spectroscopy experiments. We also discuss the possibility to use such experiments to detect if the two possible kinds of orientational defects differ in excitation energy and diffusion constant.

Entities:  

Year:  2010        PMID: 22022203      PMCID: PMC3197244          DOI: 10.1103/PhysRevB.82.205416

Source DB:  PubMed          Journal:  Phys Rev B Condens Matter Mater Phys        ISSN: 1098-0121


  37 in total

1.  Single-file water as a one-dimensional Ising model.

Authors:  Jürgen Köfinger; Christoph Dellago
Journal:  New J Phys       Date:  2010-09-27       Impact factor: 3.729

2.  Reaction coordinates and rates from transition paths.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

3.  Vertically aligned dense carbon nanotube growth with diameter control by block copolymer micelle catalyst templates.

Authors:  Xi Liu; Terry P Bigioni; Yuan Xu; Alan M Cassell; Brett A Cruden
Journal:  J Phys Chem B       Date:  2006-10-19       Impact factor: 2.991

4.  Charge- and size-based separation of macromolecules using ultrathin silicon membranes.

Authors:  Christopher C Striemer; Thomas R Gaborski; James L McGrath; Philippe M Fauchet
Journal:  Nature       Date:  2007-02-15       Impact factor: 49.962

5.  Kinetics and mechanism of proton transport across membrane nanopores.

Authors:  Christoph Dellago; Gerhard Hummer
Journal:  Phys Rev Lett       Date:  2006-12-11       Impact factor: 9.161

6.  A one-dimensional dipole lattice model for water in narrow nanopores.

Authors:  Jürgen Köfinger; Gerhard Hummer; Christoph Dellago
Journal:  J Chem Phys       Date:  2009-04-21       Impact factor: 3.488

7.  Orientational dynamics and dielectric response of nanopore water.

Authors:  Jürgen Köfinger; Christoph Dellago
Journal:  Phys Rev Lett       Date:  2009-08-17       Impact factor: 9.161

8.  Molecular mechanism of H+ conduction in the single-file water chain of the gramicidin channel.

Authors:  Régis Pomès; Benoît Roux
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

9.  Carbon nanotube filters.

Authors:  A Srivastava; O N Srivastava; S Talapatra; R Vajtai; P M Ajayan
Journal:  Nat Mater       Date:  2004-08-01       Impact factor: 43.841

10.  Water and proton conduction through carbon nanotubes as models for biological channels.

Authors:  Fangqiang Zhu; Klaus Schulten
Journal:  Biophys J       Date:  2003-07       Impact factor: 4.033

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  2 in total

1.  Single-file water in nanopores.

Authors:  Jürgen Köfinger; Gerhard Hummer; Christoph Dellago
Journal:  Phys Chem Chem Phys       Date:  2011-07-21       Impact factor: 3.676

Review 2.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

  2 in total

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