Literature DB >> 12829479

Water and proton conduction through carbon nanotubes as models for biological channels.

Fangqiang Zhu1, Klaus Schulten.   

Abstract

Carbon nanotubes, unmodified (pristine) and modified through charged atoms, were simulated in water, and their water conduction rates determined. The conducted water inside the nanotubes was found to exhibit a strong ordering of its dipole moments. In pristine nanotubes the water dipoles adopt a single orientation along the tube axis with a low flipping rate between the two possible alignments. Modification can induce in nanotubes a bipolar ordering as previously observed in biological water channels. Network thermodynamics was applied to investigate proton conduction through the nanotubes.

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Year:  2003        PMID: 12829479      PMCID: PMC1303080          DOI: 10.1016/S0006-3495(03)74469-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

Review 1.  Cellular and molecular biology of the aquaporin water channels.

Authors:  M Borgnia; S Nielsen; A Engel; P Agre
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

2.  Control of the selectivity of the aquaporin water channel family by global orientational tuning.

Authors:  Emad Tajkhorshid; Peter Nollert; Morten Ø Jensen; Larry J W Miercke; Joseph O'Connell; Robert M Stroud; Klaus Schulten
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

3.  Different time regimes of tracer exchange in single-file systems.

Authors:  Sergey Vasenkov; Jörg Kärger
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-11-19

4.  Osmotic water transport through carbon nanotube membranes.

Authors:  Amrit Kalra; Shekhar Garde; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

5.  Free energy profiles for H+ conduction along hydrogen-bonded chains of water molecules.

Authors:  R Pomès; B Roux
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

6.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

7.  Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

Authors:  B L de Groot; H Grubmüller
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

8.  Electroosmotic flow in template-prepared carbon nanotube membranes.

Authors:  S A Miller; V Y Young; C R Martin
Journal:  J Am Chem Soc       Date:  2001-12-12       Impact factor: 15.419

9.  Molecular mechanism of H+ conduction in the single-file water chain of the gramicidin channel.

Authors:  Régis Pomès; Benoît Roux
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

10.  All-atom empirical potential for molecular modeling and dynamics studies of proteins.

Authors:  A D MacKerell; D Bashford; M Bellott; R L Dunbrack; J D Evanseck; M J Field; S Fischer; J Gao; H Guo; S Ha; D Joseph-McCarthy; L Kuchnir; K Kuczera; F T Lau; C Mattos; S Michnick; T Ngo; D T Nguyen; B Prodhom; W E Reiher; B Roux; M Schlenkrich; J C Smith; R Stote; J Straub; M Watanabe; J Wiórkiewicz-Kuczera; D Yin; M Karplus
Journal:  J Phys Chem B       Date:  1998-04-30       Impact factor: 2.991

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  42 in total

1.  Theory and simulation of water permeation in aquaporin-1.

Authors:  Fangqiang Zhu; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Osmotic water transport through carbon nanotube membranes.

Authors:  Amrit Kalra; Shekhar Garde; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

3.  Nucleic acid transport through carbon nanotube membranes.

Authors:  In-Chul Yeh; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

4.  Designing biomimetic pores based on carbon nanotubes.

Authors:  Rebeca García-Fandiño; Mark S P Sansom
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

5.  Molecular dynamics simulation of water permeation through the alpha-hemolysin channel.

Authors:  Jirasak Wong-Ekkabut; Mikko Karttunen
Journal:  J Biol Phys       Date:  2015-08-12       Impact factor: 1.365

6.  Single-file water as a one-dimensional Ising model.

Authors:  Jürgen Köfinger; Christoph Dellago
Journal:  New J Phys       Date:  2010-09-27       Impact factor: 3.729

7.  Ion-nanotube terahertz oscillator.

Authors:  Deyu Lu; Yan Li; Umberto Ravaioli; Klaus Schulten
Journal:  Phys Rev Lett       Date:  2005-12-05       Impact factor: 9.161

8.  Empirical nanotube model for biological applications.

Authors:  Deyu Lu; Yan Li; Umberto Ravaioli; Klaus Schulten
Journal:  J Phys Chem B       Date:  2005-06-16       Impact factor: 2.991

Review 9.  The role of molecular modeling in bionanotechnology.

Authors:  Deyu Lu; Aleksei Aksimentiev; Amy Y Shih; Eduardo Cruz-Chu; Peter L Freddolino; Anton Arkhipov; Klaus Schulten
Journal:  Phys Biol       Date:  2006-02-02       Impact factor: 2.583

10.  Screening of Water Dipoles Inside Finite-Length Armchair Carbon Nanotubes.

Authors:  Yan Li; Deyu Lu; Klaus Schulten; Umberto Ravaioli; Slava V Rotkin
Journal:  J Comput Electron       Date:  2005-04       Impact factor: 1.807

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