Literature DB >> 17280300

Kinetics and mechanism of proton transport across membrane nanopores.

Christoph Dellago1, Gerhard Hummer.   

Abstract

We use computer simulations to study the kinetics and mechanism of proton passage through a narrow-pore carbon-nanotube membrane separating reservoirs of liquid water. Free energy and rate constant calculations show that protons move across the membrane diffusively along single-file chains of hydrogen-bonded water molecules. Proton passage through the membrane is opposed by a high barrier in the effective potential, reflecting the large electrostatic penalty for desolvation and reminiscent of charge exclusion in biological water channels. At neutral pH, we estimate a translocation rate of about 1 proton per hour and tube.

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Year:  2006        PMID: 17280300     DOI: 10.1103/PhysRevLett.97.245901

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  16 in total

1.  Single-file water as a one-dimensional Ising model.

Authors:  Jürgen Köfinger; Christoph Dellago
Journal:  New J Phys       Date:  2010-09-27       Impact factor: 3.729

2.  A one-dimensional dipole lattice model for water in narrow nanopores.

Authors:  Jürgen Köfinger; Gerhard Hummer; Christoph Dellago
Journal:  J Chem Phys       Date:  2009-04-21       Impact factor: 3.488

3.  Diffusion of glycerol through Escherichia coli aquaglyceroporin GlpF.

Authors:  Jérôme Hénin; Emad Tajkhorshid; Klaus Schulten; Christophe Chipot
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

4.  Protons migrate along interfacial water without significant contributions from jumps between ionizable groups on the membrane surface.

Authors:  Andreas Springer; Volker Hagen; Dmitry A Cherepanov; Yuri N Antonenko; Peter Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-22       Impact factor: 11.205

5.  Lewis-inspired representation of dissociable water in clusters and Grotthuss chains.

Authors:  Seyit Kale; Judith Herzfeld; Stacy Dai; Michael Blank
Journal:  J Biol Phys       Date:  2011-06-04       Impact factor: 1.365

6.  The open gate of the K(V)1.2 channel: quantum calculations show the key role of hydration.

Authors:  Alisher M Kariev; Philipa Njau; Michael E Green
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

7.  Energetics and dynamics of proton transfer reactions along short water wires.

Authors:  Ville R I Kaila; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-06-23       Impact factor: 3.676

8.  Ultrafast proton transport in sub-1-nm diameter carbon nanotube porins.

Authors:  Ramya H Tunuguntla; Frances I Allen; Kyunghoon Kim; Allison Belliveau; Aleksandr Noy
Journal:  Nat Nanotechnol       Date:  2016-04-04       Impact factor: 39.213

9.  Macroscopically ordered water in nanopores.

Authors:  Jürgen Köfinger; Gerhard Hummer; Christoph Dellago
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-02       Impact factor: 11.205

10.  Synthesis, lipid membrane incorporation, and ion permeability testing of carbon nanotube porins.

Authors:  Ramya H Tunuguntla; Artur Escalada; Vadim A Frolov; Aleksandr Noy
Journal:  Nat Protoc       Date:  2016-09-22       Impact factor: 13.491

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