Literature DB >> 22019778

Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.

Furen Zhang1, Hong Liu, Shumin Chen, Huiqi Low, Liangdan Sun, Yong Cui, Tongsheng Chu, Yi Li, Xi'an Fu, Yongxiang Yu, Gongqi Yu, Benqing Shi, Hongqing Tian, Dianchang Liu, Xiulu Yu, Jinghui Li, Nan Lu, Fangfang Bao, Chunying Yuan, Jian Liu, Huaxu Liu, Lin Zhang, Yonghu Sun, Mingfei Chen, Qing Yang, Haitao Yang, Rongde Yang, Lianhua Zhang, Qiang Wang, Hong Liu, Fuguang Zuo, Haizhen Zhang, Chiea Chuen Khor, Martin L Hibberd, Sen Yang, Jianjun Liu, Xuejun Zhang.   

Abstract

We performed a genome-wide association study with 706 individuals with leprosy and 5,581 control individuals and replicated the top 24 SNPs in three independent replication samples, including a total of 3,301 individuals with leprosy and 5,299 control individuals from China. Two loci not previously associated with the disease were identified with genome-wide significance: rs2275606 (combined P = 3.94 × 10(-14), OR = 1.30) on 6q24.3 and rs3762318 (combined P = 3.27 × 10(-11), OR = 0.69) on 1p31.3. These associations implicate IL23R and RAB32 as new susceptibility genes for leprosy. Furthermore, we identified evidence of interaction between the NOD2 and RIPK2 loci, which is consistent with the biological association of the proteins encoded by these genes (NOD2-RIPK2 complex) in activating the NF-κB pathway as a part of the host defense response to infection. Our findings have expanded the biological functions of IL23R by uncovering its involvement in infectious disease susceptibility and suggest a potential involvement of autophagocytosis in leprosy pathogenesis. The IL23R association supports previous observations of the marked overlap of susceptibility genes for leprosy and Crohn's disease, implying common pathogenesis mechanisms.

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Year:  2011        PMID: 22019778     DOI: 10.1038/ng.973

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  31 in total

1.  Global leprosy situation, 2010.

Authors: 
Journal:  Wkly Epidemiol Rec       Date:  2010-08-27

2.  Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Behçet's disease susceptibility loci.

Authors:  Nobuhisa Mizuki; Akira Meguro; Masao Ota; Shigeaki Ohno; Tomoko Shiota; Tatsukata Kawagoe; Norihiko Ito; Jiro Kera; Eiichi Okada; Keisuke Yatsu; Yeong-Wook Song; Eun-Bong Lee; Nobuyoshi Kitaichi; Kenichi Namba; Yukihiro Horie; Mitsuhiro Takeno; Sunao Sugita; Manabu Mochizuki; Seiamak Bahram; Yoshiaki Ishigatsubo; Hidetoshi Inoko
Journal:  Nat Genet       Date:  2010-07-11       Impact factor: 38.330

3.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

4.  Two independent alleles at 6q23 associated with risk of rheumatoid arthritis.

Authors:  Robert M Plenge; Chris Cotsapas; Leela Davies; Alkes L Price; Paul I W de Bakker; Julian Maller; Itsik Pe'er; Noel P Burtt; Brendan Blumenstiel; Matt DeFelice; Melissa Parkin; Rachel Barry; Wendy Winslow; Claire Healy; Robert R Graham; Benjamin M Neale; Elena Izmailova; Ronenn Roubenoff; Alexander N Parker; Roberta Glass; Elizabeth W Karlson; Nancy Maher; David A Hafler; David M Lee; Michael F Seldin; Elaine F Remmers; Annette T Lee; Leonid Padyukov; Lars Alfredsson; Jonathan Coblyn; Michael E Weinblatt; Stacey B Gabriel; Shaun Purcell; Lars Klareskog; Peter K Gregersen; Nancy A Shadick; Mark J Daly; David Altshuler
Journal:  Nat Genet       Date:  2007-11-04       Impact factor: 38.330

5.  Factors influencing the optimal control-to-case ratio in matched case-control studies.

Authors:  S Hennessy; W B Bilker; J A Berlin; B L Strom
Journal:  Am J Epidemiol       Date:  1999-01-15       Impact factor: 4.897

6.  Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC.

Authors:  Cheng Quan; Yun-Qing Ren; Lei-Hong Xiang; Liang-Dan Sun; Ai-E Xu; Xing-Hua Gao; Hong-Duo Chen; Xiong-Ming Pu; Ri-Na Wu; Chao-Zhao Liang; Jia-Bin Li; Tian-Wen Gao; Jian-Zhong Zhang; Xiu-Li Wang; Jun Wang; Rong-Ya Yang; Ling Liang; Jian-Bin Yu; Xian-Bo Zuo; Sheng-Quan Zhang; Shu-Mei Zhang; Gang Chen; Xiao-Dong Zheng; Pan Li; Jun Zhu; Yong-Wei Li; Xiao-Dong Wei; Wei-Song Hong; Ying Ye; Yong Zhang; Wei-Su Wu; Hui Cheng; Pu-Ling Dong; Da-Yan Hu; Yang Li; Min Li; Xin Zhang; Hua-Yang Tang; Xian-Fa Tang; Sheng-Xin Xu; Su-Min He; Yong-Mei Lv; Min Shen; Hong-Quan Jiang; Ying Wang; Kai Li; Xiao-Jing Kang; Yu-Qin Liu; Li Sun; Zhi-Fang Liu; Shao-Qiong Xie; Cheng-Yao Zhu; Qiang Xu; Jin-Ping Gao; Wen-Long Hu; Cheng Ni; Ting-Meng Pan; Yun Li; Sha Yao; Cai-Feng He; Yang-Sheng Liu; Ze-Ying Yu; Xian-Yong Yin; Feng-Yu Zhang; Sen Yang; Youwen Zhou; Xue-Jun Zhang
Journal:  Nat Genet       Date:  2010-06-06       Impact factor: 38.330

7.  Meta-analysis in clinical trials.

Authors:  R DerSimonian; N Laird
Journal:  Control Clin Trials       Date:  1986-09

Review 8.  Control of human host immunity to mycobacteria.

Authors:  Tom H M Ottenhoff; Frank A W Verreck; Marieke A Hoeve; Esther van de Vosse
Journal:  Tuberculosis (Edinb)       Date:  2004-12-31       Impact factor: 3.131

9.  Genomewide association study of leprosy.

Authors:  Fu-Ren Zhang; Wei Huang; Shu-Min Chen; Liang-Dan Sun; Hong Liu; Yi Li; Yong Cui; Xiao-Xiao Yan; Hai-Tao Yang; Rong-De Yang; Tong-Sheng Chu; Chi Zhang; Lin Zhang; Jian-Wen Han; Gong-Qi Yu; Cheng Quan; Yong-Xiang Yu; Zheng Zhang; Ben-Qing Shi; Lian-Hua Zhang; Hui Cheng; Chang-Yuan Wang; Yan Lin; Hou-Feng Zheng; Xi-An Fu; Xian-Bo Zuo; Qiang Wang; Heng Long; Yi-Ping Sun; Yi-Lin Cheng; Hong-Qing Tian; Fu-Sheng Zhou; Hua-Xu Liu; Wen-Sheng Lu; Su-Min He; Wen-Li Du; Min Shen; Qi-Yi Jin; Ying Wang; Hui-Qi Low; Tantoso Erwin; Ning-Han Yang; Jin-Yong Li; Xin Zhao; Yue-Lin Jiao; Li-Guo Mao; Gang Yin; Zhen-Xia Jiang; Xiao-Dong Wang; Jing-Ping Yu; Zong-Hou Hu; Cui-Hua Gong; Yu-Qiang Liu; Rui-Yu Liu; De-Min Wang; Dong Wei; Jin-Xian Liu; Wei-Kun Cao; Hong-Zhong Cao; Yong-Ping Li; Wei-Guo Yan; Shi-Yu Wei; Kui-Jun Wang; Martin L Hibberd; Sen Yang; Xue-Jun Zhang; Jian-Jun Liu
Journal:  N Engl J Med       Date:  2009-12-16       Impact factor: 91.245

10.  Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.

Authors:  Xue-Jun Zhang; Wei Huang; Sen Yang; Liang-Dan Sun; Feng-Yu Zhang; Qi-Xing Zhu; Fu-Ren Zhang; Chi Zhang; Wen-Hui Du; Xiong-Ming Pu; Hui Li; Feng-Li Xiao; Zai-Xing Wang; Yong Cui; Fei Hao; Jie Zheng; Xue-Qin Yang; Hui Cheng; Chun-Di He; Xiao-Ming Liu; Li-Min Xu; Hou-Feng Zheng; Shu-Mei Zhang; Jian-Zhong Zhang; Hong-Yan Wang; Yi-Lin Cheng; Bi-Hua Ji; Qiao-Yun Fang; Yu-Zhen Li; Fu-Sheng Zhou; Jian-Wen Han; Cheng Quan; Bin Chen; Jun-Lin Liu; Da Lin; Li Fan; An-Ping Zhang; Sheng-Xiu Liu; Chun-Jun Yang; Pei-Guang Wang; Wen-Ming Zhou; Guo-Shu Lin; Wei-Dong Wu; Xing Fan; Min Gao; Bao-Qi Yang; Wen-Sheng Lu; Zheng Zhang; Kun-Ju Zhu; Song-Ke Shen; Min Li; Xiao-Yan Zhang; Ting-Ting Cao; Wei Ren; Xin Zhang; Jun He; Xian-Fa Tang; Shun Lu; Jian-Qiang Yang; Lin Zhang; Dan-Ni Wang; Feng Yuan; Xian-Yong Yin; Hong-Jie Huang; Hai-Feng Wang; Xin-Yi Lin; Jian-Jun Liu
Journal:  Nat Genet       Date:  2009-01-25       Impact factor: 38.330

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  70 in total

1.  Genetic variants of the MRC1 gene and the IFNG gene are associated with leprosy in Han Chinese from Southwest China.

Authors:  Dong Wang; Jia-Qi Feng; Yu-Ye Li; Deng-Feng Zhang; Xiao-An Li; Qing-Wei Li; Yong-Gang Yao
Journal:  Hum Genet       Date:  2012-03-06       Impact factor: 4.132

Review 2.  Systems immunogenetics of vaccines.

Authors:  Michael Mooney; Shannon McWeeney; Rafick-Pierre Sékaly
Journal:  Semin Immunol       Date:  2013-07-22       Impact factor: 11.130

3.  The RIPK2 gene: a positional candidate for tick burden supported by genetic associations in cattle and immunological response of knockout mouse.

Authors:  Laercio R Porto Neto; Nicholas N Jonsson; Aaron Ingham; Rowan J Bunch; Blair E Harrison; William Barendse
Journal:  Immunogenetics       Date:  2012-05       Impact factor: 2.846

Review 4.  The genetic theory of infectious diseases: a brief history and selected illustrations.

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Journal:  Annu Rev Genomics Hum Genet       Date:  2013-05-29       Impact factor: 8.929

Review 5.  Genetics of immune-mediated disorders: from genome-wide association to molecular mechanism.

Authors:  Vinod Kumar; Cisca Wijmenga; Ramnik J Xavier
Journal:  Curr Opin Immunol       Date:  2014-10-14       Impact factor: 7.486

Review 6.  Rare diseases research in China: Opportunities, challenges, and solutions.

Authors:  Jinxiang Han; Yazhou Cui; Xiaoyan Zhou
Journal:  Intractable Rare Dis Res       Date:  2012-02

7.  NOD2 and CCDC122-LACC1 genes are associated with leprosy susceptibility in Brazilians.

Authors:  Carolinne Sales-Marques; Heloisa Salomão; Vinicius Medeiros Fava; Lucia Elena Alvarado-Arnez; Evaldo Pinheiro Amaral; Cynthia Chester Cardoso; Ida Maria Foschiani Dias-Batista; Weber Laurentino da Silva; Priscila Medeiros; Marcos da Cunha Lopes Virmond; Francisco Carlos Félix Lana; Antonio Guilherme Pacheco; Milton Ozório Moraes; Marcelo Távora Mira; Ana Carla Pereira Latini
Journal:  Hum Genet       Date:  2014-11-04       Impact factor: 4.132

8.  Linkage disequilibrium pattern and age-at-diagnosis are critical for replicating genetic associations across ethnic groups in leprosy.

Authors:  Andrea Alter; Vinicius Medeiros Fava; Nguyen Thu Huong; Meenakshi Singh; Marianna Orlova; Nguyen Van Thuc; Kiran Katoch; Vu Hong Thai; Nguyen Ngoc Ba; Laurent Abel; Narinder Mehra; Alexandre Alcaïs; Erwin Schurr
Journal:  Hum Genet       Date:  2012-09-29       Impact factor: 4.132

9.  CUBN and NEBL common variants in the chromosome 10p13 linkage region are associated with multibacillary leprosy in Vietnam.

Authors:  Audrey V Grant; Aurelie Cobat; Nguyen Van Thuc; Marianna Orlova; Nguyen Thu Huong; Jean Gaschignard; Andrea Alter; Nguyen Ngoc Ba; Vu Hong Thai; Laurent Abel; Alexandre Alcaïs; Erwin Schurr
Journal:  Hum Genet       Date:  2014-02-23       Impact factor: 4.132

Review 10.  A novel anti-microbial function for a familiar Rab GTPase.

Authors:  Stefania Spanò; Jorge E Galán
Journal:  Small GTPases       Date:  2013-12-09
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