Literature DB >> 19169255

Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21.

Xue-Jun Zhang1, Wei Huang, Sen Yang, Liang-Dan Sun, Feng-Yu Zhang, Qi-Xing Zhu, Fu-Ren Zhang, Chi Zhang, Wen-Hui Du, Xiong-Ming Pu, Hui Li, Feng-Li Xiao, Zai-Xing Wang, Yong Cui, Fei Hao, Jie Zheng, Xue-Qin Yang, Hui Cheng, Chun-Di He, Xiao-Ming Liu, Li-Min Xu, Hou-Feng Zheng, Shu-Mei Zhang, Jian-Zhong Zhang, Hong-Yan Wang, Yi-Lin Cheng, Bi-Hua Ji, Qiao-Yun Fang, Yu-Zhen Li, Fu-Sheng Zhou, Jian-Wen Han, Cheng Quan, Bin Chen, Jun-Lin Liu, Da Lin, Li Fan, An-Ping Zhang, Sheng-Xiu Liu, Chun-Jun Yang, Pei-Guang Wang, Wen-Ming Zhou, Guo-Shu Lin, Wei-Dong Wu, Xing Fan, Min Gao, Bao-Qi Yang, Wen-Sheng Lu, Zheng Zhang, Kun-Ju Zhu, Song-Ke Shen, Min Li, Xiao-Yan Zhang, Ting-Ting Cao, Wei Ren, Xin Zhang, Jun He, Xian-Fa Tang, Shun Lu, Jian-Qiang Yang, Lin Zhang, Dan-Ni Wang, Feng Yuan, Xian-Yong Yin, Hong-Jie Huang, Hai-Feng Wang, Xin-Yi Lin, Jian-Jun Liu.   

Abstract

We report the first large genome-wide association study (GWAS) in a Chinese population to identify susceptibility variants for psoriasis using a two-stage case-control design. In the first stage, we carried out a genome-wide association analysis in 1,139 cases and 1,132 controls of Chinese Han ancestry using Illumina Human 610-Quad BeadChips. In the second stage, we took top SNPs forward for replication in two independent samples of 5,182 cases and 6,516 controls of Chinese Han ancestry, and 539 cases and 824 controls of Chinese Uygur ancestry. In addition to the strong replication for two known susceptibility loci MHC (rs1265181, P = 1.93 x 10(-208), OR = 22.62) and IL12B (rs3213094, P(combined) = 2.58 x 10(-26), OR = 0.78), we identified a new susceptibility locus within the LCE gene cluster on 1q21 (rs4085613, P(combined) = 6.69 x 10(-30), OR = 0.76).

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19169255     DOI: 10.1038/ng.310

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  27 in total

1.  Molecular cloning and characterization of a novel mouse epidermal differentiation gene and its promoter.

Authors:  A Wang; D G Johnson; M C MacLeod
Journal:  Genomics       Date:  2001-05-01       Impact factor: 5.736

2.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

3.  A common origin for cornified envelope proteins?

Authors:  C Backendorf; D Hohl
Journal:  Nat Genet       Date:  1992-10       Impact factor: 38.330

4.  Interleukin-12 p40 gene (IL12B) 3'-untranslated region polymorphism is associated with susceptibility to atopic dermatitis and psoriasis vulgaris.

Authors:  Yuichiro Tsunemi; Hidehisa Saeki; Koichiro Nakamura; Takashi Sekiya; Koichi Hirai; Hideki Fujita; Noriko Asano; Megumi Kishimoto; Yuka Tanida; Takashi Kakinuma; Hiroshi Mitsui; Yayoi Tada; Motoshi Wakugawa; Hideshi Torii; Mayumi Komine; Akihiko Asahina; Kunihiko Tamaki
Journal:  J Dermatol Sci       Date:  2002-11       Impact factor: 4.563

5.  Sequence and haplotype analysis supports HLA-C as the psoriasis susceptibility 1 gene.

Authors:  Rajan P Nair; Philip E Stuart; Ioana Nistor; Ravi Hiremagalore; Nicholas V C Chia; Stefan Jenisch; Michael Weichenthal; Gonçalo R Abecasis; Henry W Lim; Enno Christophers; John J Voorhees; James T Elder
Journal:  Am J Hum Genet       Date:  2006-03-31       Impact factor: 11.025

6.  Cytokine gene polymorphisms in Chinese patients with psoriasis.

Authors:  Y T Chang; C T Chou; C W Yu; M W Lin; Y M Shiao; C C Chen; C H Huang; D D Lee; H N Liu; W J Wang; S F Tsai
Journal:  Br J Dermatol       Date:  2007-03-28       Impact factor: 9.302

7.  Psoriasis of early and late onset: characterization of two types of psoriasis vulgaris.

Authors:  T Henseler; E Christophers
Journal:  J Am Acad Dermatol       Date:  1985-09       Impact factor: 11.527

8.  A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.

Authors:  Ying Liu; Cynthia Helms; Wilson Liao; Lisa C Zaba; Shenghui Duan; Jennifer Gardner; Carol Wise; Andrew Miner; M J Malloy; Clive R Pullinger; John P Kane; Scott Saccone; Jane Worthington; Ian Bruce; Pui-Yan Kwok; Alan Menter; James Krueger; Anne Barton; Nancy L Saccone; Anne M Bowcock
Journal:  PLoS Genet       Date:  2008-03-28       Impact factor: 5.917

9.  Fine mapping of the psoriasis susceptibility locus PSORS1 supports HLA-C as the susceptibility gene in the Han Chinese population.

Authors:  Xing Fan; Sen Yang; Wei Huang; Zhi-Min Wang; Liang-Dan Sun; Yan-Hua Liang; Min Gao; Yue-Qing Ren; Kai-Yue Zhang; Wen-Hui Du; Yu-Jun Shen; Jian-Jun Liu; Xue-Jun Zhang
Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917

10.  ADAM33, a new candidate for psoriasis susceptibility.

Authors:  Fabienne Lesueur; Tiphaine Oudot; Simon Heath; Mario Foglio; Mark Lathrop; Jean-François Prud'homme; Judith Fischer
Journal:  PLoS One       Date:  2007-09-19       Impact factor: 3.240

View more
  158 in total

1.  [Genetics of common chronic inflammatory skin diseases : An update on atopic dermatitis and psoriasis].

Authors:  E Rodríguez; K Eyerich; S Weidinger
Journal:  Hautarzt       Date:  2011-02       Impact factor: 0.751

2.  A genome-wide association study in Han Chinese identifies new susceptibility loci for ankylosing spondylitis.

Authors:  Zhiming Lin; Jin-Xin Bei; Meixin Shen; Qiuxia Li; Zetao Liao; Yanli Zhang; Qing Lv; Qiujing Wei; Hui-Qi Low; Yun-Miao Guo; Shuangyan Cao; Mingcan Yang; Zaiying Hu; Manlong Xu; Xinwei Wang; Yanlin Wei; Li Li; Chao Li; Tianwang Li; Jianlin Huang; Yunfeng Pan; Ou Jin; Yuqiong Wu; Jing Wu; Zishi Guo; Peigen He; Shaoxian Hu; Husheng Wu; Hui Song; Feng Zhan; Shengyun Liu; Guanmin Gao; Zhangsuo Liu; Yinong Li; Changhong Xiao; Juan Li; Zhizhong Ye; Weizhen He; Dongzhou Liu; Lingxun Shen; Anbin Huang; Henglian Wu; Yi Tao; Xieping Pan; Buyun Yu; E Shyong Tai; Yi-Xin Zeng; Ee Chee Ren; Yan Shen; Jianjun Liu; Jieruo Gu
Journal:  Nat Genet       Date:  2011-12-04       Impact factor: 38.330

3.  Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy.

Authors:  Furen Zhang; Hong Liu; Shumin Chen; Huiqi Low; Liangdan Sun; Yong Cui; Tongsheng Chu; Yi Li; Xi'an Fu; Yongxiang Yu; Gongqi Yu; Benqing Shi; Hongqing Tian; Dianchang Liu; Xiulu Yu; Jinghui Li; Nan Lu; Fangfang Bao; Chunying Yuan; Jian Liu; Huaxu Liu; Lin Zhang; Yonghu Sun; Mingfei Chen; Qing Yang; Haitao Yang; Rongde Yang; Lianhua Zhang; Qiang Wang; Hong Liu; Fuguang Zuo; Haizhen Zhang; Chiea Chuen Khor; Martin L Hibberd; Sen Yang; Jianjun Liu; Xuejun Zhang
Journal:  Nat Genet       Date:  2011-10-23       Impact factor: 38.330

Review 4.  The genetics of psoriasis and psoriatic arthritis.

Authors:  Vinod Chandran
Journal:  Clin Rev Allergy Immunol       Date:  2013-04       Impact factor: 8.667

5.  2,3,7,8-Tetrachlorodibenzo-p-dioxin increases the expression of genes in the human epidermal differentiation complex and accelerates epidermal barrier formation.

Authors:  Carrie Hayes Sutter; Sridevi Bodreddigari; Christina Campion; Ryan S Wible; Thomas R Sutter
Journal:  Toxicol Sci       Date:  2011-08-11       Impact factor: 4.849

6.  Identification of cell types, tissues and pathways affected by risk loci in psoriasis.

Authors:  Yan Lin; Pan Zhao; Changbing Shen; Songke Shen; Xiaodong Zheng; Xianbo Zuo; Sen Yang; Xuejun Zhang; Xianyong Yin
Journal:  Mol Genet Genomics       Date:  2015-11-12       Impact factor: 3.291

Review 7.  Genetics of susceptibility and treatment response in psoriatic arthritis.

Authors:  Darren D O'Rielly; Proton Rahman
Journal:  Nat Rev Rheumatol       Date:  2011-11-08       Impact factor: 20.543

Review 8.  Psoriasis: what we have learned from mouse models.

Authors:  Erwin F Wagner; Helia B Schonthaler; Juan Guinea-Viniegra; Erwin Tschachler
Journal:  Nat Rev Rheumatol       Date:  2010-09-28       Impact factor: 20.543

9.  Genetic associations of psoriasis in a Pakistani population.

Authors:  P A Shaiq; P E Stuart; A Latif; C Schmotzer; A H Kazmi; M S Khan; M Azam; T Tejasvi; J J Voorhees; G K Raja; J T Elder; R Qamar; R P Nair
Journal:  Br J Dermatol       Date:  2013-08       Impact factor: 9.302

10.  A milieu of regulatory elements in the epidermal differentiation complex syntenic block: implications for atopic dermatitis and psoriasis.

Authors:  Cristina de Guzman Strong; Sean Conlan; Clayton B Deming; Jun Cheng; Karen E Sears; Julia A Segre
Journal:  Hum Mol Genet       Date:  2010-01-20       Impact factor: 6.150

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.