Literature DB >> 22018228

Human-associated microbial signatures: examining their predictive value.

Dan Knights1, Laura Wegener Parfrey, Jesse Zaneveld, Catherine Lozupone, Rob Knight.   

Abstract

Host-associated microbial communities are unique to individuals, affect host health, and correlate with disease states. Although advanced technologies capture detailed snapshots of microbial communities, high within- and between-subject variation hampers discovery of microbial signatures in diagnostic or forensic settings. We suggest turning to machine learning and discuss key directions toward harnessing human-associated microbial signatures.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh：

Year:  2011        PMID： 22018228      PMCID： PMC3879110          DOI： 10.1016/j.chom.2011.09.003

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN： 1931-3128            Impact factor:   21.023


  10 in total

1.  Forensic identification using skin bacterial communities.

Authors:  Noah Fierer; Christian L Lauber; Nick Zhou; Daniel McDonald; Elizabeth K Costello; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

Review 2.  Supervised classification of human microbiota.

Authors:  Dan Knights; Elizabeth K Costello; Rob Knight
Journal:  FEMS Microbiol Rev       Date:  2010-10-07       Impact factor: 16.408

3.  Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.

Authors:  Andrew K Benson; Scott A Kelly; Ryan Legge; Fangrui Ma; Soo Jen Low; Jaehyoung Kim; Min Zhang; Phaik Lyn Oh; Derrick Nehrenberg; Kunjie Hua; Stephen D Kachman; Etsuko N Moriyama; Jens Walter; Daniel A Peterson; Daniel Pomp
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

4.  Commensal bacteria play a role in mating preference of Drosophila melanogaster.

Authors:  Gil Sharon; Daniel Segal; John M Ringo; Abraham Hefetz; Ilana Zilber-Rosenberg; Eugene Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

Review 5.  Intestinal barrier function: molecular regulation and disease pathogenesis.

Authors:  Katherine R Groschwitz; Simon P Hogan
Journal:  J Allergy Clin Immunol       Date:  2009-07       Impact factor: 10.793

6.  The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.

Authors:  Peter J Turnbaugh; Vanessa K Ridaura; Jeremiah J Faith; Federico E Rey; Rob Knight; Jeffrey I Gordon
Journal:  Sci Transl Med       Date:  2009-11-11       Impact factor: 17.956

7.  Alterations of phospholipid concentration and species composition of the intestinal mucus barrier in ulcerative colitis: a clue to pathogenesis.

Authors:  Annika Braun; Irina Treede; Daniel Gotthardt; Anke Tietje; Alexandra Zahn; Rebecca Ruhwald; Ulrike Schoenfeld; Thilo Welsch; Peter Kienle; Gerhard Erben; Wolf-Dieter Lehmann; Joachim Fuellekrug; Wolfgang Stremmel; Robert Ehehalt
Journal:  Inflamm Bowel Dis       Date:  2009-11       Impact factor: 5.325

8.  Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.

Authors:  Daniel N Frank; Allison L St Amand; Robert A Feldman; Edgar C Boedeker; Noam Harpaz; Norman R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-15       Impact factor: 11.205

Review 9.  Microbial source tracking: state of the science.

Authors:  Joyce M Simpson; Jorge W Santo Domingo; Donald J Reasoner
Journal:  Environ Sci Technol       Date:  2002-12-15       Impact factor: 9.028

10.  Bayesian community-wide culture-independent microbial source tracking.

Authors:  Dan Knights; Justin Kuczynski; Emily S Charlson; Jesse Zaneveld; Michael C Mozer; Ronald G Collman; Frederic D Bushman; Rob Knight; Scott T Kelley
Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547
  10 in total
  52 in total

Review 1.  Antibiotics, pediatric dysbiosis, and disease.

Authors:  Pajau Vangay; Tonya Ward; Jeffrey S Gerber; Dan Knights
Journal:  Cell Host Microbe       Date:  2015-05-13       Impact factor: 21.023

Review 2.  Diversity, stability and resilience of the human gut microbiota.

Authors:  Catherine A Lozupone; Jesse I Stombaugh; Jeffrey I Gordon; Janet K Jansson; Rob Knight
Journal:  Nature       Date:  2012-09-13       Impact factor: 49.962

3.  Predictive modeling of gingivitis severity and susceptibility via oral microbiota.

Authors:  Shi Huang; Rui Li; Xiaowei Zeng; Tao He; Helen Zhao; Alice Chang; Cunpei Bo; Jie Chen; Fang Yang; Rob Knight; Jiquan Liu; Catherine Davis; Jian Xu
Journal:  ISME J       Date:  2014-03-20       Impact factor: 10.302

4.  Vertebrate decomposition is accelerated by soil microbes.

Authors:  Christian L Lauber; Jessica L Metcalf; Kyle Keepers; Gail Ackermann; David O Carter; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

Review 5.  Microbiome-wide association studies link dynamic microbial consortia to disease.

Authors:  Jack A Gilbert; Robert A Quinn; Justine Debelius; Zhenjiang Z Xu; James Morton; Neha Garg; Janet K Jansson; Pieter C Dorrestein; Rob Knight
Journal:  Nature       Date:  2016-07-07       Impact factor: 49.962

6.  Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage.

Authors:  Miling Yan; Sünje J Pamp; Julia Fukuyama; Peter H Hwang; Do-Yeon Cho; Susan Holmes; David A Relman
Journal:  Cell Host Microbe       Date:  2013-12-11       Impact factor: 21.023

7.  Rethinking "enterotypes".

Authors:  Dan Knights; Tonya L Ward; Christopher E McKinlay; Hannah Miller; Antonio Gonzalez; Daniel McDonald; Rob Knight
Journal:  Cell Host Microbe       Date:  2014-10-08       Impact factor: 21.023

Review 8.  Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.

Authors:  Eric A Franzosa; Tiffany Hsu; Alexandra Sirota-Madi; Afrah Shafquat; Galeb Abu-Ali; Xochitl C Morgan; Curtis Huttenhower
Journal:  Nat Rev Microbiol       Date:  2015-04-27       Impact factor: 60.633

9.  Highlights of the 2012 Research Workshop: Using nutrigenomics and metabolomics in clinical nutrition research.

Authors:  Steven H Zeisel; Robert A Waterland; José M Ordovás; Deborah M Muoio; Wei Jia; Anthony Fodor
Journal:  JPEN J Parenter Enteral Nutr       Date:  2012-10-05       Impact factor: 4.016

10.  A microbiota signature associated with experimental food allergy promotes allergic sensitization and anaphylaxis.

Authors:  Magali Noval Rivas; Oliver T Burton; Petra Wise; Yu-qian Zhang; Suejy A Hobson; Maria Garcia Lloret; Christel Chehoud; Justin Kuczynski; Todd DeSantis; Janet Warrington; Embriette R Hyde; Joseph F Petrosino; Georg K Gerber; Lynn Bry; Hans C Oettgen; Sarkis K Mazmanian; Talal A Chatila
Journal:  J Allergy Clin Immunol       Date:  2012-11-30       Impact factor: 10.793
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.