Literature DB >> 25299329

Rethinking "enterotypes".

Dan Knights1, Tonya L Ward2, Christopher E McKinlay1, Hannah Miller3, Antonio Gonzalez4, Daniel McDonald4, Rob Knight5.   

Abstract

Classification of the human gut microbiome into distinct types, or "enterotypes," provides an attractive framework for understanding microbial variation in health and disease. However, as discussed here, several different methods of collapsing enterotype variation into a few discrete clusters suggest that enterotype distribution is continuous and can vary widely within an individual.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Mesh：

Year:  2014        PMID： 25299329      PMCID： PMC5558460          DOI： 10.1016/j.chom.2014.09.013

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN： 1931-3128            Impact factor:   21.023


  13 in total

1.  Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.

Authors:  Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
Journal:  Appl Environ Microbiol       Date:  2009-06-05       Impact factor: 4.792

2.  Categorization of the gut microbiota: enterotypes or gradients?

Authors:  Ian B Jeffery; Marcus J Claesson; Paul W O'Toole; Fergus Shanahan
Journal:  Nat Rev Microbiol       Date:  2012-09       Impact factor: 60.633

3.  The long-term stability of the human gut microbiota.

Authors:  Jeremiah J Faith; Janaki L Guruge; Mark Charbonneau; Sathish Subramanian; Henning Seedorf; Andrew L Goodman; Jose C Clemente; Rob Knight; Andrew C Heath; Rudolph L Leibel; Michael Rosenbaum; Jeffrey I Gordon
Journal:  Science       Date:  2013-07-05       Impact factor: 47.728

4.  Enterotypes of the human gut microbiome.

Authors:  Manimozhiyan Arumugam; Jeroen Raes; Eric Pelletier; Denis Le Paslier; Takuji Yamada; Daniel R Mende; Gabriel R Fernandes; Julien Tap; Thomas Bruls; Jean-Michel Batto; Marcelo Bertalan; Natalia Borruel; Francesc Casellas; Leyden Fernandez; Laurent Gautier; Torben Hansen; Masahira Hattori; Tetsuya Hayashi; Michiel Kleerebezem; Ken Kurokawa; Marion Leclerc; Florence Levenez; Chaysavanh Manichanh; H Bjørn Nielsen; Trine Nielsen; Nicolas Pons; Julie Poulain; Junjie Qin; Thomas Sicheritz-Ponten; Sebastian Tims; David Torrents; Edgardo Ugarte; Erwin G Zoetendal; Jun Wang; Francisco Guarner; Oluf Pedersen; Willem M de Vos; Søren Brunak; Joel Doré; María Antolín; François Artiguenave; Hervé M Blottiere; Mathieu Almeida; Christian Brechot; Carlos Cara; Christian Chervaux; Antonella Cultrone; Christine Delorme; Gérard Denariaz; Rozenn Dervyn; Konrad U Foerstner; Carsten Friss; Maarten van de Guchte; Eric Guedon; Florence Haimet; Wolfgang Huber; Johan van Hylckama-Vlieg; Alexandre Jamet; Catherine Juste; Ghalia Kaci; Jan Knol; Omar Lakhdari; Severine Layec; Karine Le Roux; Emmanuelle Maguin; Alexandre Mérieux; Raquel Melo Minardi; Christine M'rini; Jean Muller; Raish Oozeer; Julian Parkhill; Pierre Renault; Maria Rescigno; Nicolas Sanchez; Shinichi Sunagawa; Antonio Torrejon; Keith Turner; Gaetana Vandemeulebrouck; Encarna Varela; Yohanan Winogradsky; Georg Zeller; Jean Weissenbach; S Dusko Ehrlich; Peer Bork
Journal:  Nature       Date:  2011-04-20       Impact factor: 49.962

5.  Bacterial community variation in human body habitats across space and time.

Authors:  Elizabeth K Costello; Christian L Lauber; Micah Hamady; Noah Fierer; Jeffrey I Gordon; Rob Knight
Journal:  Science       Date:  2009-11-05       Impact factor: 47.728

Review 6.  The impact of the gut microbiota on human health: an integrative view.

Authors:  Jose C Clemente; Luke K Ursell; Laura Wegener Parfrey; Rob Knight
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

7.  Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.

Authors:  Xochitl C Morgan; Timothy L Tickle; Harry Sokol; Dirk Gevers; Kathryn L Devaney; Doyle V Ward; Joshua A Reyes; Samir A Shah; Neal LeLeiko; Scott B Snapper; Athos Bousvaros; Joshua Korzenik; Bruce E Sands; Ramnik J Xavier; Curtis Huttenhower
Journal:  Genome Biol       Date:  2012-04-16       Impact factor: 13.583

8.  Moving pictures of the human microbiome.

Authors:  J Gregory Caporaso; Christian L Lauber; Elizabeth K Costello; Donna Berg-Lyons; Antonio Gonzalez; Jesse Stombaugh; Dan Knights; Pawel Gajer; Jacques Ravel; Noah Fierer; Jeffrey I Gordon; Rob Knight
Journal:  Genome Biol       Date:  2011       Impact factor: 13.583

9.  Human gut microbiome viewed across age and geography.

Authors:  Tanya Yatsunenko; Federico E Rey; Mark J Manary; Indi Trehan; Maria Gloria Dominguez-Bello; Monica Contreras; Magda Magris; Glida Hidalgo; Robert N Baldassano; Andrey P Anokhin; Andrew C Heath; Barbara Warner; Jens Reeder; Justin Kuczynski; J Gregory Caporaso; Catherine A Lozupone; Christian Lauber; Jose Carlos Clemente; Dan Knights; Rob Knight; Jeffrey I Gordon
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

10.  A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Authors:  Omry Koren; Dan Knights; Antonio Gonzalez; Levi Waldron; Nicola Segata; Rob Knight; Curtis Huttenhower; Ruth E Ley
Journal:  PLoS Comput Biol       Date:  2013-01-10       Impact factor: 4.475
View more
  128 in total

Review 1.  The Role of the Gut Microbiome in Predicting Response to Diet and the Development of Precision Nutrition Models-Part I: Overview of Current Methods.

Authors:  Riley L Hughes; Maria L Marco; James P Hughes; Nancy L Keim; Mary E Kable
Journal:  Adv Nutr       Date:  2019-11-01       Impact factor: 8.701

2.  pldist: ecological dissimilarities for paired and longitudinal microbiome association analysis.

Authors:  Anna M Plantinga; Jun Chen; Robert R Jenq; Michael C Wu
Journal:  Bioinformatics       Date:  2019-10-01       Impact factor: 6.937

3.  Latent environment allocation of microbial community data.

Authors:  Koichi Higashi; Shinya Suzuki; Shin Kurosawa; Hiroshi Mori; Ken Kurokawa
Journal:  PLoS Comput Biol       Date:  2018-06-06       Impact factor: 4.475

Review 4.  Clinician Guide to Microbiome Testing.

Authors:  Christopher Staley; Thomas Kaiser; Alexander Khoruts
Journal:  Dig Dis Sci       Date:  2018-09-28       Impact factor: 3.199

5.  B cell superantigens in the human intestinal microbiota.

Authors:  Jeffrey J Bunker; Christoph Drees; Andrea R Watson; Catherine H Plunkett; Cathryn R Nagler; Olaf Schneewind; A Murat Eren; Albert Bendelac
Journal:  Sci Transl Med       Date:  2019-08-28       Impact factor: 17.956

6.  Brain Structure and Response to Emotional Stimuli as Related to Gut Microbial Profiles in Healthy Women.

Authors:  Kirsten Tillisch; Emeran A Mayer; Arpana Gupta; Zafar Gill; Rémi Brazeilles; Boris Le Nevé; Johan E T van Hylckama Vlieg; Denis Guyonnet; Muriel Derrien; Jennifer S Labus
Journal:  Psychosom Med       Date:  2017-10       Impact factor: 4.312

7.  Novel Interactions between Gut Microbiome and Host Drug-Processing Genes Modify the Hepatic Metabolism of the Environmental Chemicals Polybrominated Diphenyl Ethers.

Authors:  Cindy Yanfei Li; Soowan Lee; Sara Cade; Li-Jung Kuo; Irvin R Schultz; Deepak K Bhatt; Bhagwat Prasad; Theo K Bammler; Julia Yue Cui
Journal:  Drug Metab Dispos       Date:  2017-09-01       Impact factor: 3.922

8.  Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.

Authors:  Leopoldo N Segal; Jose C Clemente; Jun-Chieh J Tsay; Sergei B Koralov; Brian C Keller; Benjamin G Wu; Yonghua Li; Nan Shen; Elodie Ghedin; Alison Morris; Phillip Diaz; Laurence Huang; William R Wikoff; Carles Ubeda; Alejandro Artacho; William N Rom; Daniel H Sterman; Ronald G Collman; Martin J Blaser; Michael D Weiden
Journal:  Nat Microbiol       Date:  2016-04-04       Impact factor: 17.745

Review 9.  The gut microbiome, diet, and links to cardiometabolic and chronic disorders.

Authors:  Judith Aron-Wisnewsky; Karine Clément
Journal:  Nat Rev Nephrol       Date:  2015-11-30       Impact factor: 28.314

10.  Consumption of a Bifidobacterium bifidum Strain for 4 Weeks Modulates Dominant Intestinal Bacterial Taxa and Fecal Butyrate in Healthy Adults.

Authors:  Giorgio Gargari; Valentina Taverniti; Silvia Balzaretti; Chiara Ferrario; Claudio Gardana; Paolo Simonetti; Simone Guglielmetti
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.