Literature DB >> 22016855

GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome.

Guillermo P Bernet1, Alfonso Muñoz-Pomer, Laura Domínguez-Escribá, Laura Covelli, Lucía Bernad, Sukanya Ramasamy, Ricardo Futami, Jose M Sempere, Andrés Moya, Carlos Llorens.   

Abstract

The Gypsy Database concerning Mobile Genetic Elements (release 2.0) is a wiki-style project devoted to the phylogenetic classification of LTR retroelements and their viral and host gene relatives characterized from distinct organisms. Furthermore, GyDB 2.0 is concerned with studying mobile elements within genomes. Therefore, an in-progress repository was created for databases with annotations of mobile genetic elements from particular genomes. This repository is called Mobilomics and the first uploaded database contains 549 LTR retroelements and related transposases which have been annotated from the genome of the Pea aphid Acyrthosiphon pisum. Mobilomics is accessible from the GyDB 2.0 project using the URL: http://gydb.org/index.php/Mobilomics.

Entities:  

Year:  2011        PMID： 22016855      PMCID： PMC3190316          DOI： 10.4161/mge.1.2.17635

Source DB:  PubMed          Journal:  Mob Genet Elements        ISSN： 2159-2543


  20 in total

1.  A eukaryotic gene family related to retroelement integrases.

Authors:  Xiang Gao; Daniel F Voytas
Journal:  Trends Genet       Date:  2005-03       Impact factor: 11.639

2.  Self-synthesizing DNA transposons in eukaryotes.

Authors:  Vladimir V Kapitonov; Jerzy Jurka
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

3.  AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

Authors:  F Legeai; S Shigenobu; J-P Gauthier; J Colbourne; C Rispe; O Collin; S Richards; A C C Wilson; T Murphy; D Tagu
Journal:  Insect Mol Biol       Date:  2010-03       Impact factor: 3.585

4.  Mavericks, a novel class of giant transposable elements widespread in eukaryotes and related to DNA viruses.

Authors:  Ellen J Pritham; Tasneem Putliwala; Cédric Feschotte
Journal:  Gene       Date:  2006-08-23       Impact factor: 3.688

5.  GIN transposons: genetic elements linking retrotransposons and genes.

Authors:  Ignacio Marín
Journal:  Mol Biol Evol       Date:  2010-03-12       Impact factor: 16.240

6.  Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons.

Authors:  Weidong Bao; Vladimir V Kapitonov; Jerzy Jurka
Journal:  Mob DNA       Date:  2010-01-25

7.  Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees.

Authors:  Carlos Llorens; Alfonso Muñoz-Pomer; Lucia Bernad; Hector Botella; Andrés Moya
Journal:  Biol Direct       Date:  2009-11-02       Impact factor: 4.540

8.  The Gypsy Database (GyDB) of mobile genetic elements: release 2.0.

Authors:  Carlos Llorens; Ricardo Futami; Laura Covelli; Laura Domínguez-Escribá; Jose M Viu; Daniel Tamarit; Jose Aguilar-Rodríguez; Miguel Vicente-Ripolles; Gonzalo Fuster; Guillermo P Bernet; Florian Maumus; Alfonso Munoz-Pomer; Jose M Sempere; Amparo Latorre; Andres Moya
Journal:  Nucleic Acids Res       Date:  2010-10-29       Impact factor: 16.971

9.  BEL/Pao retrotransposons in metazoan genomes.

Authors:  Nicole de la Chaux; Andreas Wagner
Journal:  BMC Evol Biol       Date:  2011-06-04       Impact factor: 3.260

10.  The Sinbad retrotransposon from the genome of the human blood fluke, Schistosoma mansoni, and the distribution of related Pao-like elements.

Authors:  Claudia S Copeland; Victoria H Mann; Maria E Morales; Bernd H Kalinna; Paul J Brindley
Journal:  BMC Evol Biol       Date:  2005-02-23       Impact factor: 3.260
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  3 in total

Review 1.  Omics resources and omics-enabled approaches for achieving high productivity and improved quality in pea (Pisum sativum L.).

Authors:  Arun K Pandey; Diego Rubiales; Yonggang Wang; Pingping Fang; Ting Sun; Na Liu; Pei Xu
Journal:  Theor Appl Genet       Date:  2021-01-12       Impact factor: 5.699

2.  Aphids: a model for polyphenism and epigenetics.

Authors:  Dayalan G Srinivasan; Jennifer A Brisson
Journal:  Genet Res Int       Date:  2012-03-21

3.  On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain.

Authors:  Carlos Llorens; Guillermo P Bernet; Sukanya Ramasamy; Cedric Feschotte; Andrés Moya
Journal:  Mob Genet Elements       Date:  2012-09-01
  3 in total

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