Literature DB >> 20482635

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

F Legeai1, S Shigenobu, J-P Gauthier, J Colbourne, C Rispe, O Collin, S Richards, A C C Wilson, T Murphy, D Tagu.   

Abstract

AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at http://www.aphidbase.com.

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Year:  2010        PMID： 20482635      PMCID： PMC4372297          DOI： 10.1111/j.1365-2583.2009.00930.x

Source DB:  PubMed          Journal:  Insect Mol Biol        ISSN： 0962-1075            Impact factor:   3.585


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