Literature DB >> 22012881

Twists and turns in ubiquitin-like protein conjugation cascades.

Brenda A Schulman1.   

Abstract

Post-translational modification by ubiquitin-like proteins (UBLs) is a predominant eukaryotic regulatory mechanism. The vast reach of this form of regulation extends to virtually all eukaryotic processes that involve proteins. UBL modifications play critical roles in controlling the cell cycle, transcription, DNA repair, stress responses, signaling, immunity, plant growth, embryogenesis, circadian rhythms, and a plethora of other pathways. UBLs dynamically modulate target protein properties including enzymatic activity, conformation, half-life, subcellular localization, and intermolecular interactions. Moreover, the enzymatic process of UBL ligation to proteins is itself dynamic, with the UBL moving between multiple enzyme active sites and ultimately to a target. This review highlights our work on how the dynamic conformations of selected enzymes catalyzing UBL ligation help mediate this fascinating form of protein regulation.
Copyright © 2011 The Protein Society.

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Year:  2011        PMID: 22012881      PMCID: PMC3302639          DOI: 10.1002/pro.750

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  154 in total

1.  NEDD8 recruits E2-ubiquitin to SCF E3 ligase.

Authors:  T Kawakami; T Chiba; T Suzuki; K Iwai; K Yamanaka; N Minato; H Suzuki; N Shimbara; Y Hidaka; F Osaka; M Omata; K Tanaka
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

2.  Insights into the ubiquitin transfer cascade from the structure of the activating enzyme for NEDD8.

Authors:  Helen Walden; Michael S Podgorski; Brenda A Schulman
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

Review 3.  Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy.

Authors:  A L Goldberg
Journal:  Biochem Soc Trans       Date:  2007-02       Impact factor: 5.407

Review 4.  Proteasomes: machines for all reasons.

Authors:  George N Demartino; Thomas G Gillette
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

Review 5.  A proteasome for all occasions.

Authors:  John Hanna; Daniel Finley
Journal:  FEBS Lett       Date:  2007-03-30       Impact factor: 4.124

6.  In vivo degradation of a transcriptional regulator: the yeast alpha 2 repressor.

Authors:  M Hochstrasser; A Varshavsky
Journal:  Cell       Date:  1990-05-18       Impact factor: 41.582

7.  The Rbx1 subunit of SCF and VHL E3 ubiquitin ligase activates Rub1 modification of cullins Cdc53 and Cul2.

Authors:  T Kamura; M N Conrad; Q Yan; R C Conaway; J W Conaway
Journal:  Genes Dev       Date:  1999-11-15       Impact factor: 11.361

8.  Ubiquitin dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85.

Authors:  A Ciechanover; D Finley; A Varshavsky
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

Review 9.  Recognition and processing of ubiquitin-protein conjugates by the proteasome.

Authors:  Daniel Finley
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

10.  An inhibitor of NEDD8-activating enzyme as a new approach to treat cancer.

Authors:  Teresa A Soucy; Peter G Smith; Michael A Milhollen; Allison J Berger; James M Gavin; Sharmila Adhikari; James E Brownell; Kristine E Burke; David P Cardin; Stephen Critchley; Courtney A Cullis; Amanda Doucette; James J Garnsey; Jeffrey L Gaulin; Rachel E Gershman; Anna R Lublinsky; Alice McDonald; Hirotake Mizutani; Usha Narayanan; Edward J Olhava; Stephane Peluso; Mansoureh Rezaei; Michael D Sintchak; Tina Talreja; Michael P Thomas; Tary Traore; Stepan Vyskocil; Gabriel S Weatherhead; Jie Yu; Julie Zhang; Lawrence R Dick; Christopher F Claiborne; Mark Rolfe; Joseph B Bolen; Steven P Langston
Journal:  Nature       Date:  2009-04-09       Impact factor: 49.962

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  24 in total

1.  Identification of a non-covalent ternary complex formed by PIAS1, SUMO1, and UBC9 proteins involved in transcriptional regulation.

Authors:  Xavier H Mascle; Mathieu Lussier-Price; Laurent Cappadocia; Patricia Estephan; Luca Raiola; James G Omichinski; Muriel Aubry
Journal:  J Biol Chem       Date:  2013-10-30       Impact factor: 5.157

Review 2.  Visualizing ubiquitination in mammalian cells.

Authors:  Sjoerd Jl van Wijk; Simone Fulda; Ivan Dikic; Mike Heilemann
Journal:  EMBO Rep       Date:  2019-01-21       Impact factor: 8.807

Review 3.  Post-translational modification profiling - A novel tool for mapping the protein modification landscape in cancer.

Authors:  Avital Eisenberg-Lerner; Aaron Ciechanover; Yifat Merbl
Journal:  Exp Biol Med (Maywood)       Date:  2016-05-26

4.  UbSRD: The Ubiquitin Structural Relational Database.

Authors:  Joseph S Harrison; Tim M Jacobs; Kevin Houlihan; Koenraad Van Doorslaer; Brian Kuhlman
Journal:  J Mol Biol       Date:  2015-09-25       Impact factor: 5.469

Review 5.  Ubiquitin-dependent protein degradation at the yeast endoplasmic reticulum and nuclear envelope.

Authors:  Dimitrios Zattas; Mark Hochstrasser
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-09-18       Impact factor: 8.250

Review 6.  The ubiquitin proteasome system and myocardial ischemia.

Authors:  Justine Calise; Saul R Powell
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-12-07       Impact factor: 4.733

7.  Stabilization of an unusual salt bridge in ubiquitin by the extra C-terminal domain of the proteasome-associated deubiquitinase UCH37 as a mechanism of its exo specificity.

Authors:  Marie E Morrow; Myung-Il Kim; Judith A Ronau; Michael J Sheedlo; Rhiannon R White; Joseph Chaney; Lake N Paul; Markus A Lill; Katerina Artavanis-Tsakonas; Chittaranjan Das
Journal:  Biochemistry       Date:  2013-05-09       Impact factor: 3.162

8.  Structural insights into proteasome activation by the 19S regulatory particle.

Authors:  Aaron Ehlinger; Kylie J Walters
Journal:  Biochemistry       Date:  2013-05-14       Impact factor: 3.162

Review 9.  Building and remodelling Cullin-RING E3 ubiquitin ligases.

Authors:  John R Lydeard; Brenda A Schulman; J Wade Harper
Journal:  EMBO Rep       Date:  2013-11-15       Impact factor: 8.807

10.  Dynamics of an Active-Site Flap Contributes to Catalysis in a JAMM Family Metallo Deubiquitinase.

Authors:  Amy N Bueno; Rashmi K Shrestha; Judith A Ronau; Aditya Babar; Michael J Sheedlo; Julian E Fuchs; Lake N Paul; Chittaranjan Das
Journal:  Biochemistry       Date:  2015-10-06       Impact factor: 3.162

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