Literature DB >> 22012399

Evolution of a new enzyme for carbon disulphide conversion by an acidothermophilic archaeon.

Marjan J Smeulders1, Thomas R M Barends, Arjan Pol, Anna Scherer, Marcel H Zandvoort, Anikó Udvarhelyi, Ahmad F Khadem, Andreas Menzel, John Hermans, Robert L Shoeman, Hans J C T Wessels, Lambert P van den Heuvel, Lina Russ, Ilme Schlichting, Mike S M Jetten, Huub J M Op den Camp.   

Abstract

Extremophilic organisms require specialized enzymes for their exotic metabolisms. Acid-loving thermophilic Archaea that live in the mudpots of volcanic solfataras obtain their energy from reduced sulphur compounds such as hydrogen sulphide (H(2)S) and carbon disulphide (CS(2)). The oxidation of these compounds into sulphuric acid creates the extremely acidic environment that characterizes solfataras. The hyperthermophilic Acidianus strain A1-3, which was isolated from the fumarolic, ancient sauna building at the Solfatara volcano (Naples, Italy), was shown to rapidly convert CS(2) into H(2)S and carbon dioxide (CO(2)), but nothing has been known about the modes of action and the evolution of the enzyme(s) involved. Here we describe the structure, the proposed mechanism and evolution of a CS(2) hydrolase from Acidianus A1-3. The enzyme monomer displays a typical β-carbonic anhydrase fold and active site, yet CO(2) is not one of its substrates. Owing to large carboxy- and amino-terminal arms, an unusual hexadecameric catenane oligomer has evolved. This structure results in the blocking of the entrance to the active site that is found in canonical β-carbonic anhydrases and the formation of a single 15-Å-long, highly hydrophobic tunnel that functions as a specificity filter. The tunnel determines the enzyme's substrate specificity for CS(2), which is hydrophobic. The transposon sequences that surround the gene encoding this CS(2) hydrolase point to horizontal gene transfer as a mechanism for its acquisition during evolution. Our results show how the ancient β-carbonic anhydrase, which is central to global carbon metabolism, was transformed by divergent evolution into a crucial enzyme in CS(2) metabolism.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22012399     DOI: 10.1038/nature10464

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  40 in total

1.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

2.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

3.  Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte.

Authors:  M B ALLEN
Journal:  Arch Mikrobiol       Date:  1959

4.  The archetype gamma-class carbonic anhydrase (Cam) contains iron when synthesized in vivo.

Authors:  Sheridan R Macauley; Sabrina A Zimmerman; Ethel E Apolinario; Caryn Evilia; Ya-Ming Hou; James G Ferry; Kevin R Sowers
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

5.  The active site architecture of Pisum sativum beta-carbonic anhydrase is a mirror image of that of alpha-carbonic anhydrases.

Authors:  M S Kimber; E F Pai
Journal:  EMBO J       Date:  2000-04-03       Impact factor: 11.598

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Carbonic anhydrase metabolism is a key factor in the toxicity of CO2 and COS but not CS2 toward the flour beetle Tribolium castaneum [Coleoptera: Tenebrionidae].

Authors:  Victoria S Haritos; Greg Dojchinov
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2005-01       Impact factor: 3.228

8.  Kinetic and spectroscopic characterization of the gamma-carbonic anhydrase from the methanoarchaeon Methanosarcina thermophila.

Authors:  B E Alber; C M Colangelo; J Dong; C M Stålhandske; T T Baird; C Tu; C A Fierke; D N Silverman; R A Scott; J G Ferry
Journal:  Biochemistry       Date:  1999-10-05       Impact factor: 3.162

9.  Isolation of a carbon disulfide utilizing Thiomonas sp. and its application in a biotrickling filter.

Authors:  Arjan Pol; Chris van der Drift; Huub J M Op den Camp
Journal:  Appl Microbiol Biotechnol       Date:  2006-11-07       Impact factor: 4.813

10.  A plant-type (beta-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum.

Authors:  K S Smith; J G Ferry
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

View more
  15 in total

1.  Diversity and ecophysiology of new isolates of extremely acidophilic CS2-converting Acidithiobacillus strains.

Authors:  Marjan J Smeulders; Arjan Pol; Marcel H Zandvoort; Mike S M Jetten; Huub J M Op den Camp
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

Review 2.  Emerging Roles of Carbonyl Sulfide in Chemical Biology: Sulfide Transporter or Gasotransmitter?

Authors:  Andrea K Steiger; Yu Zhao; Michael D Pluth
Journal:  Antioxid Redox Signal       Date:  2017-05-18       Impact factor: 8.401

3.  X-ray Structure of Catenated Lytic Transglycosylase SltB1.

Authors:  Teresa Domínguez-Gil; Rafael Molina; David A Dik; Edward Spink; Shahriar Mobashery; Juan A Hermoso
Journal:  Biochemistry       Date:  2017-11-16       Impact factor: 3.162

4.  LinkProt: a database collecting information about biological links.

Authors:  Pawel Dabrowski-Tumanski; Aleksandra I Jarmolinska; Wanda Niemyska; Eric J Rawdon; Kenneth C Millett; Joanna I Sulkowska
Journal:  Nucleic Acids Res       Date:  2016-10-28       Impact factor: 16.971

5.  α-Carbonic Anhydrases Possess Thioesterase Activity.

Authors:  Muhammet Tanc; Fabrizio Carta; Andrea Scozzafava; Claudiu T Supuran
Journal:  ACS Med Chem Lett       Date:  2015-01-19       Impact factor: 4.345

6.  Bacterial CS2 hydrolases from Acidithiobacillus thiooxidans strains are homologous to the archaeal catenane CS2 hydrolase.

Authors:  Marjan J Smeulders; Arjan Pol; Hanka Venselaar; Thomas R M Barends; John Hermans; Mike S M Jetten; Huub J M Op den Camp
Journal:  J Bacteriol       Date:  2013-07-08       Impact factor: 3.490

7.  Transmission electron microscopy enables the reconstruction of the catenane and ring forms of CS2 hydrolase.

Authors:  Joseph Che-Yen Wang; Adam Zlotnick; Jasmin Mecinović
Journal:  Chem Commun (Camb)       Date:  2014-09-14       Impact factor: 6.222

8.  Soil carbonyl sulfide exchange in relation to microbial community composition: insights from a managed grassland soil amendment experiment.

Authors:  Florian Kitz; María Gómez-Brandón; Bernhard Eder; Mohammad Etemadi; Felix M Spielmann; Albin Hammerle; Heribert Insam; Georg Wohlfahrt
Journal:  Soil Biol Biochem       Date:  2019-04-12       Impact factor: 7.609

9.  A class of 4-sulfamoylphenyl-ω-aminoalkyl ethers with effective carbonic anhydrase inhibitory action and antiglaucoma effects.

Authors:  Murat Bozdag; Melissa Pinard; Fabrizio Carta; Emanuela Masini; Andrea Scozzafava; Robert McKenna; Claudiu T Supuran
Journal:  J Med Chem       Date:  2014-11-10       Impact factor: 7.446

10.  Isotopic Fractionation of Sulfur in Carbonyl Sulfide by Carbonyl Sulfide Hydrolase of Thiobacillus thioparus THI115.

Authors:  Takahiro Ogawa; Shohei Hattori; Kazuki Kamezaki; Hiromi Kato; Naohiro Yoshida; Yoko Katayama
Journal:  Microbes Environ       Date:  2017-12-02       Impact factor: 2.912

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.