Literature DB >> 22012018

True microbiota involved in chronic lung infection of cystic fibrosis patients found by culturing and 16S rRNA gene analysis.

Vibeke B Rudkjøbing1, Trine R Thomsen, Morten Alhede, Kasper N Kragh, Per H Nielsen, Ulla R Johansen, Michael Givskov, Niels Høiby, Thomas Bjarnsholt.   

Abstract

Patients suffering from cystic fibrosis (CF) develop chronic lung infection. In this study, we investigated the microorganisms present in transplanted CF lungs (n = 5) by standard culturing and 16S rRNA gene analysis. A correspondence between culturing and the molecular methods was observed. In conclusion, standard culturing seems reliable for the identification of the dominating pathogens.

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Year:  2011        PMID： 22012018      PMCID： PMC3233003          DOI： 10.1128/JCM.06092-11

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  21 in total

Review 1.  Bacterial biofilms: a common cause of persistent infections.

Authors:  J W Costerton; P S Stewart; E P Greenberg
Journal:  Science       Date:  1999-05-21       Impact factor: 47.728

2.  The microbial community composition of a nitrifying-denitrifying activated sludge from an industrial sewage treatment plant analyzed by the full-cycle rRNA approach.

Authors:  Stefan Juretschko; Alexander Loy; Angelika Lehner; Michael Wagner
Journal:  Syst Appl Microbiol       Date:  2002-04       Impact factor: 4.022

3.  Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases.

Authors:  Philip Hugenholtz; Thomas Huber
Journal:  Int J Syst Evol Microbiol       Date:  2003-01       Impact factor: 2.747

Review 4.  Lung infections in cystic fibrosis: deriving clinical insight from microbial complexity.

Authors:  Geraint B Rogers; Franziska A Stressmann; Alan W Walker; Mary P Carroll; Kenneth D Bruce
Journal:  Expert Rev Mol Diagn       Date:  2010-03       Impact factor: 5.225

Review 5.  Infection and inflammation in cystic fibrosis: a short review.

Authors:  Harry Heijerman
Journal:  J Cyst Fibros       Date:  2005-08       Impact factor: 5.482

6.  Methods to classify bacterial pathogens in cystic fibrosis.

Authors:  Thomas Bjarnsholt; Xiaohui Chen Nielsen; Ulla Johansen; Lena Nørgaard; Niels Høiby
Journal:  Methods Mol Biol       Date:  2011

7.  Analysis of the bacterial communities present in lungs of patients with cystic fibrosis from American and British centers.

Authors:  Franziska A Stressmann; Geraint B Rogers; Erich R Klem; Andrew K Lilley; Scott H Donaldson; Thomas W Daniels; Mary P Carroll; Nilesh Patel; Benjamin Forbes; Richard C Boucher; Matthew C Wolfgang; Kenneth D Bruce
Journal:  J Clin Microbiol       Date:  2010-11-10       Impact factor: 5.948

Review 8.  Cystic fibrosis lung transplantation.

Authors:  Andrew T Braun; Christian A Merlo
Journal:  Curr Opin Pulm Med       Date:  2011-11       Impact factor: 3.155

9.  Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.

Authors:  T R Thomsen; K Finster; N B Ramsing
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

10.  Microbiology of early CF lung disease.

Authors:  Lisa Saiman
Journal:  Paediatr Respir Rev       Date:  2004       Impact factor: 2.726
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  16 in total

Review 1.  The role of the bacterial microbiome in lung disease.

Authors:  Robert P Dickson; John R Erb-Downward; Gary B Huffnagle
Journal:  Expert Rev Respir Med       Date:  2013-06       Impact factor: 3.772

Review 2.  Cystic Fibrosis Airway Microbiome: Overturning the Old, Opening the Way for the New.

Authors:  George A O'Toole
Journal:  J Bacteriol       Date:  2018-01-24       Impact factor: 3.490

3.  Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota.

Authors:  Amanda F Goddard; Benjamin J Staudinger; Scot E Dowd; Amruta Joshi-Datar; Randall D Wolcott; Moira L Aitken; Corinne L Fligner; Pradeep K Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-07       Impact factor: 11.205

4.  Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements.

Authors:  Rolf Kramer; Annette Sauer-Heilborn; Tobias Welte; Carlos A Guzman; Wolf-Rainer Abraham; Manfred G Höfle
Journal:  J Clin Microbiol       Date:  2015-07-01       Impact factor: 5.948

Review 5.  Sinus bacteriology in patients with cystic fibrosis or primary ciliary dyskinesia: A systematic review.

Authors:  Maria E Møller; Mikkel C Alanin; Christian Grønhøj; Kasper Aanæs; Niels Høiby; Christian von Buchwald
Journal:  Am J Rhinol Allergy       Date:  2017-09-01       Impact factor: 2.467

Review 6.  The microbiome at the pulmonary alveolar niche and its role in Mycobacterium tuberculosis infection.

Authors:  Alexander J Adami; Jorge L Cervantes
Journal:  Tuberculosis (Edinb)       Date:  2015-07-30       Impact factor: 3.131

Review 7.  Directly sampling the lung of a young child with cystic fibrosis reveals diverse microbiota.

Authors:  Perry S Brown; Christopher E Pope; Robyn L Marsh; Xuan Qin; Sharon McNamara; Ronald Gibson; Jane L Burns; Gail Deutsch; Lucas R Hoffman
Journal:  Ann Am Thorac Soc       Date:  2014-09

8.  Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.

Authors:  Dana Willner; Joshua Daly; David Whiley; Keith Grimwood; Claire E Wainwright; Philip Hugenholtz
Journal:  PLoS One       Date:  2012-04-13       Impact factor: 3.240

9.  Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes.

Authors:  Tim Holm Jakobsen; Martin Asser Hansen; Peter Østrup Jensen; Lars Hansen; Leise Riber; April Cockburn; Mette Kolpen; Christine Rønne Hansen; Winnie Ridderberg; Steffen Eickhardt; Marlene Hansen; Peter Kerpedjiev; Morten Alhede; Klaus Qvortrup; Mette Burmølle; Claus Moser; Michael Kühl; Oana Ciofu; Michael Givskov; Søren J Sørensen; Niels Høiby; Thomas Bjarnsholt
Journal:  PLoS One       Date:  2013-07-22       Impact factor: 3.240

10.  Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant in situ populations.

Authors:  Dana Willner; Serene Low; Jason A Steen; Narelle George; Graeme R Nimmo; Mark A Schembri; Philip Hugenholtz
Journal:  MBio       Date:  2014-02-25       Impact factor: 7.867
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