Literature DB >> 22004760

GB1 is not a two-state folder: identification and characterization of an on-pathway intermediate.

Angela Morrone1, Rajanish Giri, Rudesh D Toofanny, Carlo Travaglini-Allocatelli, Maurizio Brunori, Valerie Daggett, Stefano Gianni.   

Abstract

The folding pathway of the small α/β protein GB1 has been extensively studied during the past two decades using both theoretical and experimental approaches. These studies provided a consensus view that the protein folds in a two-state manner. Here, we reassessed the folding of GB1, both by experiments and simulations, and detected the presence of an on-pathway intermediate. This intermediate has eluded earlier experimental characterization and is distinct from the collapsed state previously identified using ultrarapid mixing. Failure to identify the presence of an intermediate affects some of the conclusions that have been drawn for GB1, a popular model for protein folding studies.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22004760      PMCID: PMC3192981          DOI: 10.1016/j.bpj.2011.09.013

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Critical role of beta-hairpin formation in protein G folding.

Authors:  E L McCallister; E Alm; D Baker
Journal:  Nat Struct Biol       Date:  2000-08

2.  Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding.

Authors:  Ignacio E Sánchez; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2003-01-10       Impact factor: 5.469

3.  The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation.

Authors:  Jun Shimada; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-06       Impact factor: 11.205

4.  Fast and slow intermediate accumulation and the initial barrier mechanism in protein folding.

Authors:  Bryan A Krantz; Leland Mayne; Jon Rumbley; S Walter Englander; Tobin R Sosnick
Journal:  J Mol Biol       Date:  2002-11-22       Impact factor: 5.469

5.  The origins of asymmetry in the folding transition states of protein L and protein G.

Authors:  John Karanicolas; Charles L Brooks
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

6.  Unifying features in protein-folding mechanisms.

Authors:  Stefano Gianni; Nicholas R Guydosh; Faaizah Khan; Teresa D Caldas; Ugo Mayor; George W N White; Mari L DeMarco; Valerie Daggett; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

7.  Methods for molecular dynamics simulations of protein folding/unfolding in solution.

Authors:  David A C Beck; Valerie Daggett
Journal:  Methods       Date:  2004-09       Impact factor: 3.608

8.  Commitment and nucleation in the protein G transition state.

Authors:  Isaac A Hubner; Jun Shimada; Eugene I Shakhnovich
Journal:  J Mol Biol       Date:  2004-02-20       Impact factor: 5.469

9.  A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding.

Authors:  Rudesh D Toofanny; Amanda L Jonsson; Valerie Daggett
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

10.  Insights into conformation and dynamics of protein GB1 during folding and unfolding by NMR.

Authors:  Keyang Ding; John M Louis; Angela M Gronenborn
Journal:  J Mol Biol       Date:  2004-01-30       Impact factor: 5.469

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  10 in total

1.  Folding pathways of proteins with increasing degree of sequence identities but different structure and function.

Authors:  Rajanish Giri; Angela Morrone; Carlo Travaglini-Allocatelli; Per Jemth; Maurizio Brunori; Stefano Gianni
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-31       Impact factor: 11.205

2.  Single-molecule fluorescence experiments determine protein folding transition path times.

Authors:  Hoi Sung Chung; Kevin McHale; John M Louis; William A Eaton
Journal:  Science       Date:  2012-02-24       Impact factor: 47.728

3.  Characterization of the free-energy landscapes of proteins by NMR-guided metadynamics.

Authors:  Daniele Granata; Carlo Camilloni; Michele Vendruscolo; Alessandro Laio
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-09       Impact factor: 11.205

4.  Residue level quantification of protein stability in living cells.

Authors:  William B Monteith; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

5.  Complex pathways in folding of protein G explored by simulation and experiment.

Authors:  Lisa J Lapidus; Srabasti Acharya; Christian R Schwantes; Ling Wu; Diwakar Shukla; Michael King; Stephen J DeCamp; Vijay S Pande
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

6.  Engineered solubility tag for solution NMR of proteins.

Authors:  Amy M Ruschak; Justine D Rose; Michael P Coughlin; Tomasz L Religa
Journal:  Protein Sci       Date:  2013-09-20       Impact factor: 6.725

7.  Dried Protein Structure Revealed at the Residue Level by Liquid-Observed Vapor Exchange NMR.

Authors:  Candice J Crilly; Julia A Brom; Mark E Kowalewski; Samantha Piszkiewicz; Gary J Pielak
Journal:  Biochemistry       Date:  2021-01-05       Impact factor: 3.162

8.  Effects of ionic strength on the folding and stability of SAMP1, a ubiquitin-like halophilic protein.

Authors:  Takuya Mizukami; John T Bedford; ShanHui Liao; Lesley H Greene; Heinrich Roder
Journal:  Biophys J       Date:  2022-01-19       Impact factor: 3.699

9.  Structural Determinants of Misfolding in Multidomain Proteins.

Authors:  Pengfei Tian; Robert B Best
Journal:  PLoS Comput Biol       Date:  2016-05-10       Impact factor: 4.475

10.  Theoretical Insights into the Biophysics of Protein Bi-stability and Evolutionary Switches.

Authors:  Tobias Sikosek; Heinrich Krobath; Hue Sun Chan
Journal:  PLoS Comput Biol       Date:  2016-06-02       Impact factor: 4.475

  10 in total

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