Literature DB >> 22003757

Multi-stage learning for robust lung segmentation in challenging CT volumes.

Michal Sofka1, Jens Wetzl, Neil Birkbeck, Jingdan Zhang, Timo Kohlberger, Jens Kaftan, Jérôme Declerck, S Kevin Zhou.   

Abstract

Simple algorithms for segmenting healthy lung parenchyma in CT are unable to deal with high density tissue common in pulmonary diseases. To overcome this problem, we propose a multi-stage learning-based approach that combines anatomical information to predict an initialization of a statistical shape model of the lungs. The initialization first detects the carina of the trachea, and uses this to detect a set of automatically selected stable landmarks on regions near the lung (e.g., ribs, spine). These landmarks are used to align the shape model, which is then refined through boundary detection to obtain fine-grained segmentation. Robustness is obtained through hierarchical use of discriminative classifiers that are trained on a range of manually annotated data of diseased and healthy lungs. We demonstrate fast detection (35s per volume on average) and segmentation of 2 mm accuracy on challenging data.

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Year:  2011        PMID: 22003757     DOI: 10.1007/978-3-642-23626-6_82

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  15 in total

1.  Multi-resolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species.

Authors:  Sarah E Gerard; Jacob Herrmann; David W Kaczka; Guido Musch; Ana Fernandez-Bustamante; Joseph M Reinhardt
Journal:  Med Image Anal       Date:  2019-11-07       Impact factor: 8.545

2.  Illustration of the obstacles in computerized lung segmentation using examples.

Authors:  Xin Meng; Yongqian Qiang; Shaocheng Zhu; Carl Fuhrman; Jill M Siegfried; Jiantao Pu
Journal:  Med Phys       Date:  2012-08       Impact factor: 4.071

3.  Semiautomatic segmentation of longitudinal computed tomography images in a rat model of lung injury by surfactant depletion.

Authors:  Yi Xin; Gang Song; Maurizio Cereda; Stephen Kadlecek; Hooman Hamedani; Yunqing Jiang; Jennia Rajaei; Justin Clapp; Harrilla Profka; Natalie Meeder; Jue Wu; Nicholas J Tustison; James C Gee; Rahim R Rizi
Journal:  J Appl Physiol (1985)       Date:  2014-11-13

4.  A generic approach to pathological lung segmentation.

Authors:  Awais Mansoor; Ulas Bagci; Ziyue Xu; Brent Foster; Kenneth N Olivier; Jason M Elinoff; Anthony F Suffredini; Jayaram K Udupa; Daniel J Mollura
Journal:  IEEE Trans Med Imaging       Date:  2014-07-08       Impact factor: 10.048

5.  Computer-aided diagnosis systems for lung cancer: challenges and methodologies.

Authors:  Ayman El-Baz; Garth M Beache; Georgy Gimel'farb; Kenji Suzuki; Kazunori Okada; Ahmed Elnakib; Ahmed Soliman; Behnoush Abdollahi
Journal:  Int J Biomed Imaging       Date:  2013-01-29

6.  Endotracheal tubes positioning detection in adult portable chest radiography for intensive care unit.

Authors:  Sheng Chen; Min Zhang; Liping Yao; Wentao Xu
Journal:  Int J Comput Assist Radiol Surg       Date:  2016-06-14       Impact factor: 2.924

7.  Accurate and efficient separation of left and right lungs from 3D CT scans: A generic hysteresis approach.

Authors:  Ulas Bagci; Colleen Jonsson; Sanjay Jain; Daniel J Mollura
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

8.  An approach for reducing the error rate in automated lung segmentation.

Authors:  Gurman Gill; Reinhard R Beichel
Journal:  Comput Biol Med       Date:  2016-06-29       Impact factor: 4.589

9.  Automatic lung segmentation in routine imaging is primarily a data diversity problem, not a methodology problem.

Authors:  Johannes Hofmanninger; Forian Prayer; Jeanny Pan; Sebastian Röhrich; Helmut Prosch; Georg Langs
Journal:  Eur Radiol Exp       Date:  2020-08-20

10.  A computational pipeline for quantification of pulmonary infections in small animal models using serial PET-CT imaging.

Authors:  Ulas Bagci; Brent Foster; Kirsten Miller-Jaster; Brian Luna; Bappaditya Dey; William R Bishai; Colleen B Jonsson; Sanjay Jain; Daniel J Mollura
Journal:  EJNMMI Res       Date:  2013-07-23       Impact factor: 3.138

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