Literature DB >> 22000017

A primary role for release factor 3 in quality control during translation elongation in Escherichia coli.

Hani S Zaher1, Rachel Green.   

Abstract

Release factor 3 (RF3) is a GTPase found in a broad range of bacteria where it is thought to play a critical "recycling" role in translation by facilitating the removal of class 1 release factors (RF1 and RF2) from the ribosome following peptide release. More recently, RF3 was shown in vitro to stimulate a retrospective editing reaction on the bacterial ribosome wherein peptides carrying mistakes are prematurely terminated during protein synthesis. Here, we examine the role of RF3 in the bacterial cell and show that the deletion of this gene sensitizes cells to other perturbations that reduce the overall fidelity of protein synthesis. We further document substantial effects on mRNA stability and protein expression using reporter systems, native mRNAs and proteins. We conclude that RF3 plays a primary role in vivo in specifying the fidelity of protein synthesis thus impacting overall protein quantity and quality.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22000017      PMCID: PMC3415990          DOI: 10.1016/j.cell.2011.08.045

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  44 in total

1.  Ribosome release factor RF4 and termination factor RF3 are involved in dissociation of peptidyl-tRNA from the ribosome.

Authors:  V Heurgué-Hamard; R Karimi; L Mora; J MacDougall; C Leboeuf; G Grentzmann; M Ehrenberg; R H Buckingham
Journal:  EMBO J       Date:  1998-02-02       Impact factor: 11.598

Review 2.  Emerging understanding of translation termination.

Authors:  Y Nakamura; K Ito; L A Isaksson
Journal:  Cell       Date:  1996-10-18       Impact factor: 41.582

3.  Function of polypeptide chain release factor RF-3 in Escherichia coli. RF-3 action in termination is predominantly at UGA-containing stop signals.

Authors:  G Grentzmann; D Brechemier-Baey; V Heurgué-Hamard; R H Buckingham
Journal:  J Biol Chem       Date:  1995-05-05       Impact factor: 5.157

4.  Release factor-dependent false stops are infrequent in Escherichia coli.

Authors:  F Jørgensen; F M Adamski; W P Tate; C G Kurland
Journal:  J Mol Biol       Date:  1993-03-05       Impact factor: 5.469

5.  Localization and characterization of the gene encoding release factor RF3 in Escherichia coli.

Authors:  G Grentzmann; D Brechemier-Baey; V Heurgue; L Mora; R H Buckingham
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

6.  Missense misreading of asparagine codons as a function of codon identity and context.

Authors:  J Precup; J Parker
Journal:  J Biol Chem       Date:  1987-08-15       Impact factor: 5.157

7.  Release factor RF3 in E.coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner.

Authors:  D V Freistroffer; M Y Pavlov; J MacDougall; R H Buckingham; M Ehrenberg
Journal:  EMBO J       Date:  1997-07-01       Impact factor: 11.598

8.  Conserved motifs in prokaryotic and eukaryotic polypeptide release factors: tRNA-protein mimicry hypothesis.

Authors:  K Ito; K Ebihara; M Uno; Y Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  1996-05-28       Impact factor: 11.205

9.  Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli.

Authors:  O Mikuni; K Ito; J Moffat; K Matsumura; K McCaughan; T Nobukuni; W Tate; Y Nakamura
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-21       Impact factor: 11.205

10.  Dissociation rates of peptidyl-tRNA from the P-site of E.coli ribosomes.

Authors:  R Karimi; M Ehrenberg
Journal:  EMBO J       Date:  1996-03-01       Impact factor: 11.598

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  28 in total

1.  Another burst of smoke: atomic resolution structures of RF3 bound to the ribosome.

Authors:  Megan E McDonald; Rachel Green
Journal:  RNA       Date:  2012-02-17       Impact factor: 4.942

2.  Interactions of release factor RF3 with the translation machinery.

Authors:  Michael O'Connor
Journal:  Mol Genet Genomics       Date:  2015-01-31       Impact factor: 3.291

3.  Distinct roles for release factor 1 and release factor 2 in translational quality control.

Authors:  Alexandros D Petropoulos; Megan E McDonald; Rachel Green; Hani S Zaher
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

Review 4.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

5.  Heterogeneity of Stop Codon Readthrough in Single Bacterial Cells and Implications for Population Fitness.

Authors:  Yongqiang Fan; Christopher R Evans; Karl W Barber; Kinshuk Banerjee; Kalyn J Weiss; William Margolin; Oleg A Igoshin; Jesse Rinehart; Jiqiang Ling
Journal:  Mol Cell       Date:  2017-08-03       Impact factor: 17.970

6.  Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria.

Authors:  Arvind R Subramaniam; Tao Pan; Philippe Cluzel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

7.  An integrated approach reveals regulatory controls on bacterial translation elongation.

Authors:  Arvind R Subramaniam; Brian M Zid; Erin K O'Shea
Journal:  Cell       Date:  2014-11-20       Impact factor: 41.582

8.  Regulation of gene expression by macrolide-induced ribosomal frameshifting.

Authors:  Pulkit Gupta; Krishna Kannan; Alexander S Mankin; Nora Vázquez-Laslop
Journal:  Mol Cell       Date:  2013-11-14       Impact factor: 17.970

9.  Quantitative assessment of ribosome drop-off in E. coli.

Authors:  Celine Sin; Davide Chiarugi; Angelo Valleriani
Journal:  Nucleic Acids Res       Date:  2016-03-01       Impact factor: 16.971

Review 10.  Mistranslation of the genetic code.

Authors:  Adil Moghal; Kyle Mohler; Michael Ibba
Journal:  FEBS Lett       Date:  2014-09-16       Impact factor: 4.124

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