Literature DB >> 26935582

Quantitative assessment of ribosome drop-off in E. coli.

Celine Sin1, Davide Chiarugi1, Angelo Valleriani2.   

Abstract

Premature ribosome drop-off is one of the major errors in translation of mRNA by ribosomes. However, repeated analyses of Ribo-seq data failed to quantify its strength inE. coli Relying on a novel highly sensitive data analysis method we show that a significant rate of ribosome drop-off is measurable and can be quantified also when cells are cultured under non-stressing conditions. Moreover, we find that the drop-off rate is highly variable, depending on multiple factors. In particular, under environmental stress such as amino acid starvation or ethanol intoxication, the drop-off rate markedly increases.
© The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2016        PMID: 26935582      PMCID: PMC4824120          DOI: 10.1093/nar/gkw137

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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