Literature DB >> 21995034

HARDI based pattern classifiers for the identification of white matter pathologies.

Luke Bloy1, Madhura Ingalhalikar, Harini Eavani, Timothy P L Roberts, Robert T Schultz, Ragini Verma.   

Abstract

The paper presents a method for creating abnormality classifiers from high angular resolution diffusion imaging (HARDI) data. We utilized the fiber orientation distribution (FOD) diffusion model to represent the local WM architecture of each subject. The FOD images are then spatially normalized to a common template using a non-linear registration technique. Regions of homogeneous white matter architecture (ROIs) are determined by applying a parcellation algorithm to the population average FOD image. Orientation invariant features of each ROI's mean FOD are determined and concatenated into a feature vector to represent each subject. Principal component analysis (PCA) was used for dimensionality reduction and a linear support vector machine (SVM) classifier is trained on the PCA coefficients. The classifier assigns each test subject a probabilistic score indicating the likelihood of belonging to the patient group. The method was validated using a 5 fold validation scheme on a population containing autism spectrum disorder (ASD) patients and typically developing (TD) controls. A clear distinction between ASD patients and controls was obtained with a 77% accuracy.

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Mesh:

Year:  2011        PMID: 21995034      PMCID: PMC3201760          DOI: 10.1007/978-3-642-23629-7_29

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  12 in total

1.  Characterization of anisotropy in high angular resolution diffusion-weighted MRI.

Authors:  Lawrence R Frank
Journal:  Magn Reson Med       Date:  2002-06       Impact factor: 4.668

2.  DTI based diagnostic prediction of a disease via pattern classification.

Authors:  Madhura Ingalhalikar; Stathis Kanterakis; Ruben Gur; Timothy P L Roberts; Ragini Verma
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

3.  NEURONAL WHITE MATTER PARCELLATION USING SPATIALLY COHERENT NORMALIZED CUTS.

Authors:  Luke Bloy; Madhura Ingalhalikar; Ragini Verma
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011

4.  Atypical diffusion tensor hemispheric asymmetry in autism.

Authors:  Nicholas Lange; Molly B Dubray; Jee Eun Lee; Michael P Froimowitz; Alyson Froehlich; Nagesh Adluru; Brad Wright; Caitlin Ravichandran; P Thomas Fletcher; Erin D Bigler; Andrew L Alexander; Janet E Lainhart
Journal:  Autism Res       Date:  2010-12-02       Impact factor: 5.216

5.  COMPARE: classification of morphological patterns using adaptive regional elements.

Authors:  Yong Fan; Dinggang Shen; Ruben C Gur; Raquel E Gur; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2007-01       Impact factor: 10.048

6.  Shaving diffusion tensor images in discriminant analysis: a study into schizophrenia.

Authors:  M W A Caan; K A Vermeer; L J van Vliet; C B L M Majoie; B D Peters; G J den Heeten; F M Vos
Journal:  Med Image Anal       Date:  2006-09-11       Impact factor: 8.545

7.  Fully automated classification of HARDI in vivo data using a support vector machine.

Authors:  S Schnell; D Saur; B W Kreher; J Hennig; H Burkhardt; V G Kiselev
Journal:  Neuroimage       Date:  2009-03-12       Impact factor: 6.556

8.  Characterization of and correction for eddy current artifacts in echo planar diffusion imaging.

Authors:  P Jezzard; A S Barnett; C Pierpaoli
Journal:  Magn Reson Med       Date:  1998-05       Impact factor: 4.668

9.  Investigating the predictive value of whole-brain structural MR scans in autism: a pattern classification approach.

Authors:  Christine Ecker; Vanessa Rocha-Rego; Patrick Johnston; Janaina Mourao-Miranda; Andre Marquand; Eileen M Daly; Michael J Brammer; Clodagh Murphy; Declan G Murphy
Journal:  Neuroimage       Date:  2009-08-14       Impact factor: 6.556

10.  On classifying disease-induced patterns in the brain using diffusion tensor images.

Authors:  Peng Wang; Ragini Verma
Journal:  Med Image Comput Comput Assist Interv       Date:  2008
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  5 in total

Review 1.  Multimodal imaging in autism: an early review of comprehensive neural circuit characterization.

Authors:  Benjamin E Yerys; John D Herrington
Journal:  Curr Psychiatry Rep       Date:  2014-11       Impact factor: 5.285

2.  GENERALIZED HARDI INVARIANTS BY METHOD OF TENSOR CONTRACTION.

Authors:  Yaniv Gur; Chris R Johnson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014-04-29

3.  White matter atlas generation using HARDI based automated parcellation.

Authors:  Luke Bloy; Madhura Ingalhalikar; Harini Eavani; Robert T Schultz; Timothy P L Roberts; Ragini Verma
Journal:  Neuroimage       Date:  2011-08-26       Impact factor: 6.556

Review 4.  Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A review.

Authors:  Parisa Moridian; Navid Ghassemi; Mahboobeh Jafari; Salam Salloum-Asfar; Delaram Sadeghi; Marjane Khodatars; Afshin Shoeibi; Abbas Khosravi; Sai Ho Ling; Abdulhamit Subasi; Roohallah Alizadehsani; Juan M Gorriz; Sara A Abdulla; U Rajendra Acharya
Journal:  Front Mol Neurosci       Date:  2022-10-04       Impact factor: 6.261

5.  Towards accurate and unbiased imaging-based differentiation of Parkinson's disease, progressive supranuclear palsy and corticobasal syndrome.

Authors:  Marta M Correia; Timothy Rittman; Christopher L Barnes; Ian T Coyle-Gilchrist; Boyd Ghosh; Laura E Hughes; James B Rowe
Journal:  Brain Commun       Date:  2020-04-27
  5 in total

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