Literature DB >> 21994937

A new family of carbohydrate esterases is represented by a GDSL hydrolase/acetylxylan esterase from Geobacillus stearothermophilus.

Onit Alalouf1, Yael Balazs, Margarita Volkinshtein, Yael Grimpel, Gil Shoham, Yuval Shoham.   

Abstract

Acetylxylan esterases hydrolyze the ester linkages of acetyl groups at positions 2 and/or 3 of the xylose moieties in xylan and play an important role in enhancing the accessibility of xylanases to the xylan backbone. The hemicellulolytic system of the thermophilic bacterium Geobacillus stearothermophilus T-6 comprises a putative acetylxylan esterase gene, axe2. The gene product belongs to the GDSL hydrolase family and does not share sequence homology with any of the carbohydrate esterases in the CAZy Database. The axe2 gene is induced by xylose, and the purified gene product completely deacetylates xylobiose peracetate (fully acetylated) and hydrolyzes the synthetic substrates 2-naphthyl acetate, 4-nitrophenyl acetate, 4-methylumbelliferyl acetate, and phenyl acetate. The pH profiles for k(cat) and k(cat)/K(m) suggest the existence of two ionizable groups affecting the binding of the substrate to the enzyme. Using NMR spectroscopy, the regioselectivity of Axe2 was directly determined with the aid of one-dimensional selective total correlation spectroscopy. Methyl 2,3,4-tri-O-acetyl-β-d-xylopyranoside was rapidly deacetylated at position 2 or at positions 3 and 4 to give either diacetyl or monoacetyl intermediates, respectively; methyl 2,3,4,6-tetra-O-acetyl-β-d-glucopyranoside was initially deacetylated at position 6. In both cases, the complete hydrolysis of the intermediates occurred at a much slower rate, suggesting that the preferred substrate is the peracetate sugar form. Site-directed mutagenesis of Ser-15, His-194, and Asp-191 resulted in complete inactivation of the enzyme, consistent with their role as the catalytic triad. Overall, our results show that Axe2 is a serine acetylxylan esterase representing a new carbohydrate esterase family.

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Year:  2011        PMID: 21994937      PMCID: PMC3234920          DOI: 10.1074/jbc.M111.301051

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  42 in total

1.  The structure of an inverting GH43 beta-xylosidase from Geobacillus stearothermophilus with its substrate reveals the role of the three catalytic residues.

Authors:  Christian Brüx; Alon Ben-David; Dalia Shallom-Shezifi; Maya Leon; Karsten Niefind; Gil Shoham; Yuval Shoham; Dietmar Schomburg
Journal:  J Mol Biol       Date:  2006-03-20       Impact factor: 5.469

2.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

Authors:  Fabian Glaser; Tal Pupko; Inbal Paz; Rachel E Bell; Dalit Bechor-Shental; Eric Martz; Nir Ben-Tal
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

3.  Three-dimensional structure of the catalytic core of acetylxylan esterase from Trichoderma reesei: insights into the deacetylation mechanism.

Authors:  N Hakulinen; M Tenkanen; J Rouvinen
Journal:  J Struct Biol       Date:  2000-12       Impact factor: 2.867

4.  Biochemical characterization and identification of the catalytic residues of a family 43 beta-D-xylosidase from Geobacillus stearothermophilus T-6.

Authors:  Dalia Shallom; Maya Leon; Tsafrir Bravman; Alon Ben-David; Galia Zaide; Valery Belakhov; Gil Shoham; Dietmar Schomburg; Timor Baasov; Yuval Shoham
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

5.  Crystallization and preliminary X-ray analysis of the thermostable alkaline-tolerant xylanase from Bacillus stearothermophilus T-6.

Authors:  A Teplitsky; H Feinberg; R Gilboa; A Lapidot; A Mechaly; V Stojanoff; M Capel; Y Shoham; G Shoham
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-09-01

6.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

7.  Crystal structures of Geobacillus stearothermophilus alpha-glucuronidase complexed with its substrate and products: mechanistic implications.

Authors:  Gali Golan; Dalia Shallom; Anna Teplitsky; Galia Zaide; Smadar Shulami; Timor Baasov; Vivian Stojanoff; Andy Thompson; Yuval Shoham; Gil Shoham
Journal:  J Biol Chem       Date:  2003-10-22       Impact factor: 5.157

8.  Effect of dimer dissociation on activity and thermostability of the alpha-glucuronidase from Geobacillus stearothermophilus: dissecting the different oligomeric forms of family 67 glycoside hydrolases.

Authors:  Dalia Shallom; Gali Golan; Gil Shoham; Yuval Shoham
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

9.  Action of xylan deacetylating enzymes on monoacetyl derivatives of 4-nitrophenyl glycosides of β-D-xylopyranose and α-L-arabinofuranose.

Authors:  Peter Biely; Mária Mastihubová; Maija Tenkanen; Jaime Eyzaguirre; Xin-Liang Li; Mária Vršanská
Journal:  J Biotechnol       Date:  2010-10-26       Impact factor: 3.307

10.  Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus.

Authors:  Tsafrir Bravman; Gennady Zolotnitsky; Valery Belakhov; Gil Shoham; Bernard Henrissat; Timor Baasov; Yuval Shoham
Journal:  Biochemistry       Date:  2003-09-09       Impact factor: 3.162

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  24 in total

1.  Preliminary crystallographic analysis of Xyn52B2, a GH52 β-D-xylosidase from Geobacillus stearothermophilus T6.

Authors:  Roie Dann; Shifra Lansky; Noa Lavid; Arie Zehavi; Valery Belakhov; Timor Baasov; Hay Dvir; Babu Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

2.  SGNH hydrolase-type esterase domain containing Cbes-AcXE2: a novel and thermostable acetyl xylan esterase from Caldicellulosiruptor bescii.

Authors:  Surabhi Soni; Sneha S Sathe; Annamma A Odaneth; Arvind M Lali; Sanjeev K Chandrayan
Journal:  Extremophiles       Date:  2017-04-25       Impact factor: 2.395

3.  Cross-utilization of β-galactosides and cellobiose in Geobacillus stearothermophilus.

Authors:  Smadar Shulami; Arie Zehavi; Valery Belakhov; Rachel Salama; Shifra Lansky; Timor Baasov; Gil Shoham; Yuval Shoham
Journal:  J Biol Chem       Date:  2020-06-03       Impact factor: 5.157

4.  Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus.

Authors:  Shifra Lansky; Onit Alalouf; Vered Solomon; Anat Alhassid; Lata Govada; Naomi E Chayen; Naomi E Chayan; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-03-28

5.  Purification, crystallization and preliminary crystallographic analysis of Gan1D, a GH1 6-phospho-β-galactosidase from Geobacillus stearothermophilus T1.

Authors:  Shifra Lansky; Arie Zehavi; Roie Dann; Hay Dvir; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

6.  Multiple regulatory mechanisms control the expression of the Geobacillus stearothermophilus gene for extracellular xylanase.

Authors:  Smadar Shulami; Ofer Shenker; Yael Langut; Noa Lavid; Orit Gat; Galia Zaide; Arie Zehavi; Abraham L Sonenshein; Yuval Shoham
Journal:  J Biol Chem       Date:  2014-07-28       Impact factor: 5.157

7.  Structural insights into the putative bacterial acetylcholinesterase ChoE and its substrate inhibition mechanism.

Authors:  Van Dung Pham; Tuan Anh To; Cynthia Gagné-Thivierge; Manon Couture; Patrick Lagüe; Deqiang Yao; Marie-Ève Picard; Louis-André Lortie; Sabrina A Attéré; Xiaojun Zhu; Roger C Levesque; Steve J Charette; Rong Shi
Journal:  J Biol Chem       Date:  2020-05-05       Impact factor: 5.157

8.  Cloning, purification and preliminary crystallographic analysis of Ara127N, a GH127 β-L-arabinofuranosidase from Geobacillus stearothermophilus T6.

Authors:  Shifra Lansky; Rachel Salama; Roie Dann; Izhak Shner; Babu A Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

9.  Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular β-galactosidase from Geobacillus stearothermophilus.

Authors:  Hodaya V Solomon; Orly Tabachnikov; Hadar Feinberg; Lata Govada; Naomi E Chayen; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

10.  Identification and Characterization of a New 7-Aminocephalosporanic Acid Deacetylase from Thermophilic Bacterium Alicyclobacillus tengchongensis.

Authors:  Jun-Mei Ding; Ting-Ting Yu; Nan-Yu Han; Jia-Lin Yu; Jun-Jun Li; Yun-Juan Yang; Xiang-Hua Tang; Bo Xu; Jun-Pei Zhou; Hong-Zhi Tang; Zun-Xi Huang
Journal:  J Bacteriol       Date:  2015-11-02       Impact factor: 3.490

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