Literature DB >> 12499312

ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

Fabian Glaser1, Tal Pupko, Inbal Paz, Rachel E Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben-Tal.   

Abstract

UNLABELLED: We recently developed algorithmic tools for the identification of functionally important regions in proteins of known three dimensional structure by estimating the degree of conservation of the amino-acid sites among their close sequence homologues. Projecting the conservation grades onto the molecular surface of these proteins reveals patches of highly conserved (or occasionally highly variable) residues that are often of important biological function. We present a new web server, ConSurf, which automates these algorithmic tools. ConSurf may be used for high-throughput characterization of functional regions in proteins. AVAILABILITY: The ConSurf web server is available at:http://consurf.tau.ac.il. SUPPLEMENTARY INFORMATION: A set of examples is available at http://consurf.tau.ac.il under 'GALLERY'.

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Substances:

Year:  2003        PMID: 12499312     DOI: 10.1093/bioinformatics/19.1.163

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  456 in total

1.  Identification of two novel missense mutations in the KAL1 gene in Han Chinese subjects with Kallmann Syndrome.

Authors:  T-S Jap; C-Y Chiu; J-F Lirng; G-S Won
Journal:  J Endocrinol Invest       Date:  2010-06-04       Impact factor: 4.256

2.  Functional analysis of interaction sites on the N-terminal domain of clathrin heavy chain.

Authors:  Anna K Willox; Stephen J Royle
Journal:  Traffic       Date:  2011-10-20       Impact factor: 6.215

3.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

4.  Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium.

Authors:  James M Aramini; Paolo Rossi; John R Cort; Li-Chung Ma; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Journal:  Proteins       Date:  2011-01

5.  Solution structure of Vibrio cholerae protein VC0424: a variation of the ferredoxin-like fold.

Authors:  Theresa A Ramelot; Shuisong Ni; Sharon Goldsmith-Fischman; John R Cort; Barry Honig; Michael A Kennedy
Journal:  Protein Sci       Date:  2003-07       Impact factor: 6.725

Review 6.  Target selection and determination of function in structural genomics.

Authors:  James D Watson; Annabel E Todd; James Bray; Roman A Laskowski; Aled Edwards; Andrzej Joachimiak; Christine A Orengo; Janet M Thornton
Journal:  IUBMB Life       Date:  2003 Apr-May       Impact factor: 3.885

7.  Asymmetric mutation rates at enzyme-inhibitor interfaces: implications for the protein-protein docking problem.

Authors:  James R Bradford; David R Westhead
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  Solution structure of the RWD domain of the mouse GCN2 protein.

Authors:  Nobukazu Nameki; Misao Yoneyama; Seizo Koshiba; Naoya Tochio; Makoto Inoue; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takushi Harada; Kohei Saito; Naohiro Kobayashi; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Natsuko Matsuda; Noriko Sakagami; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Takashi Osanai; Akiko Tanaka; Takahiro Arakawa; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki; Kengo Kinoshita; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

9.  Structural basis for the autoinhibition of focal adhesion kinase.

Authors:  Daniel Lietha; Xinming Cai; Derek F J Ceccarelli; Yiqun Li; Michael D Schaller; Michael J Eck
Journal:  Cell       Date:  2007-06-15       Impact factor: 41.582

10.  A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs.

Authors:  Elke Prade; Mukesh Mahajan; Sang-Choul Im; Meng Zhang; Katherine A Gentry; G M Anantharamaiah; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-14       Impact factor: 15.336

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