Literature DB >> 23545652

Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus.

Shifra Lansky1, Onit Alalouf, Vered Solomon, Anat Alhassid, Lata Govada, Naomi E Chayen, Naomi E Chayan, Hassan Belrhali, Yuval Shoham, Gil Shoham.   

Abstract

Acetylxylan esterases are part of the hemi-cellulolytic system of many microorganisms which utilize plant biomass for growth. Xylans, which are polymeric sugars that constitute a significant part of the plant biomass, are usually substituted with acetyl side groups attached at position 2 or 3 of the xylose backbone units. Acetylxylan esterases hydrolyse the ester linkages of the xylan acetyl groups and thus improve the ability of main-chain hydrolysing enzymes to break down the sugar backbone units. As such, these enzymes play an important part in the hemi-cellulolytic utilization system of many microorganisms that use plant biomass for growth. Interest in the biochemical characterization and structural analysis of these enzymes stems from their numerous potential biotechnological applications. An acetylxylan esterase (Axe2) of this type from Geobacillus stearothermophilus T-6 has recently been cloned, overexpressed, purified, biochemically characterized and crystallized. One of the crystal forms obtained (RB1) belonged to the tetragonal space group I422, with unit-cell parameters a = b = 110.2, c = 213.1 Å. A full diffraction data set was collected to 1.85 Å resolution from flash-cooled crystals of the wild-type enzyme at 100 K using synchrotron radiation. A selenomethionine derivative of Axe2 has also been prepared and crystallized for single-wavelength anomalous diffraction experiments. The crystals of the selenomethionine-derivatized Axe2 appeared to be isomorphous to those of the wild-type enzyme and enabled the measurement of a full 1.85 Å resolution diffraction data set at the selenium absorption edge and a full 1.70 Å resolution data set at a remote wavelength. These data are currently being used for three-dimensional structure determination of the Axe2 protein.

Entities:  

Keywords:  Geobacillus stearothermophilus; SAD data collection; selenium absorption edge; serine esterases; xylan esterases

Mesh:

Substances:

Year:  2013        PMID: 23545652      PMCID: PMC3614171          DOI: 10.1107/S1744309113004260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  30 in total

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4.  Crystallization and preliminary X-ray analysis of the thermostable alkaline-tolerant xylanase from Bacillus stearothermophilus T-6.

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9.  Action of xylan deacetylating enzymes on monoacetyl derivatives of 4-nitrophenyl glycosides of β-D-xylopyranose and α-L-arabinofuranose.

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10.  Detailed kinetic analysis of a family 52 glycoside hydrolase: a beta-xylosidase from Geobacillus stearothermophilus.

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Journal:  Biochemistry       Date:  2003-09-09       Impact factor: 3.162

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Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

2.  SGNH hydrolase-type esterase domain containing Cbes-AcXE2: a novel and thermostable acetyl xylan esterase from Caldicellulosiruptor bescii.

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3.  Purification, crystallization and preliminary crystallographic analysis of Gan1D, a GH1 6-phospho-β-galactosidase from Geobacillus stearothermophilus T1.

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4.  Integrative structure determination reveals functional global flexibility for an ultra-multimodular arabinanase.

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5.  Cloning, purification and preliminary crystallographic analysis of Ara127N, a GH127 β-L-arabinofuranosidase from Geobacillus stearothermophilus T6.

Authors:  Shifra Lansky; Rachel Salama; Roie Dann; Izhak Shner; Babu A Manjasetty; Hassan Belrhali; Yuval Shoham; Gil Shoham
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6.  Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular β-galactosidase from Geobacillus stearothermophilus.

Authors:  Hodaya V Solomon; Orly Tabachnikov; Hadar Feinberg; Lata Govada; Naomi E Chayen; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

7.  Crystallization and preliminary crystallographic analysis of Abp, a GH27 β-L-arabinopyranosidase from Geobacillus stearothermophilus.

Authors:  Shifra Lansky; Rachel Salama; Vered H Solomon; Hassan Belrhali; Yuval Shoham; Gil Shoham
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8.  Preliminary crystallographic analysis of a double mutant of the acetyl xylo-oligosaccharide esterase Axe2 in its dimeric form.

Authors:  Shifra Lansky; Onit Alalouf; Rachel Salama; Hay Dvir; Yuval Shoham; Gil Shoham
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

9.  Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis.

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10.  A novel cold-adapted and highly salt-tolerant esterase from Alkalibacterium sp. SL3 from the sediment of a soda lake.

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