Literature DB >> 21987179

A functional RNase P protein subunit of bacterial origin in some eukaryotes.

Lien B Lai1, Pilar Bernal-Bayard, Gireesha Mohannath, Stella M Lai, Venkat Gopalan, Agustín Vioque.   

Abstract

RNase P catalyzes 5'-maturation of tRNAs. While bacterial RNase P comprises an RNA catalyst and a protein cofactor, the eukaryotic (nuclear) variant contains an RNA and up to ten proteins, all unrelated to the bacterial protein. Unexpectedly, a nuclear-encoded bacterial RNase P protein (RPP) homolog is found in several prasinophyte algae including Ostreococcus tauri. We demonstrate that recombinant O. tauri RPP can functionally reconstitute with bacterial RNase P RNAs (RPRs) but not with O. tauri organellar RPRs, despite the latter's presumed bacterial origins. We also show that O. tauri PRORP, a homolog of Arabidopsis PRORP-1, displays tRNA 5'-processing activity in vitro. We discuss the implications of the striking diversity of RNase P in O. tauri, the smallest known free-living eukaryote.

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Year:  2011        PMID: 21987179     DOI: 10.1007/s00438-011-0651-y

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  42 in total

1.  Elucidation of structure-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach.

Authors:  Milan Jovanovic; Ruth Sanchez; Sidney Altman; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

2.  A structural and functional study of plastid RNAs homologous to catalytic bacterial RNase P RNA.

Authors:  Jesús de la Cruz; Agustín Vioque
Journal:  Gene       Date:  2003-12-04       Impact factor: 3.688

Review 3.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

Review 4.  Trials, travails and triumphs: an account of RNA catalysis in RNase P.

Authors:  William H McClain; Lien B Lai; Venkat Gopalan
Journal:  J Mol Biol       Date:  2010-01-25       Impact factor: 5.469

5.  Identification of the universally conserved core of ribonuclease P RNA.

Authors:  J L Chen; N R Pace
Journal:  RNA       Date:  1997-06       Impact factor: 4.942

6.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Authors:  Evelyne Derelle; Conchita Ferraz; Stephane Rombauts; Pierre Rouzé; Alexandra Z Worden; Steven Robbens; Frédéric Partensky; Sven Degroeve; Sophie Echeynié; Richard Cooke; Yvan Saeys; Jan Wuyts; Kamel Jabbari; Chris Bowler; Olivier Panaud; Benoît Piégu; Steven G Ball; Jean-Philippe Ral; François-Yves Bouget; Gwenael Piganeau; Bernard De Baets; André Picard; Michel Delseny; Jacques Demaille; Yves Van de Peer; Hervé Moreau
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-25       Impact factor: 11.205

7.  The mixed lineage nature of nitrogen transport and assimilation in marine eukaryotic phytoplankton: a case study of micromonas.

Authors:  Sarah M McDonald; Joshua N Plant; Alexandra Z Worden
Journal:  Mol Biol Evol       Date:  2010-05-09       Impact factor: 16.240

8.  Structural implications of novel diversity in eucaryal RNase P RNA.

Authors:  Steven M Marquez; J Kirk Harris; Scott T Kelley; James W Brown; Scott C Dawson; Elisabeth C Roberts; Norman R Pace
Journal:  RNA       Date:  2005-04-05       Impact factor: 4.942

Review 9.  Archaeal/eukaryal RNase P: subunits, functions and RNA diversification.

Authors:  Nayef Jarrous; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2010-08-16       Impact factor: 16.971

10.  Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes.

Authors:  Magnus Alm Rosenblad; Marcela Dávila López; Paul Piccinelli; Tore Samuelsson
Journal:  Nucleic Acids Res       Date:  2006-09-22       Impact factor: 16.971

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  16 in total

1.  Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA.

Authors:  Takamasa Teramoto; Kipchumba J Kaitany; Yoshimitsu Kakuta; Makoto Kimura; Carol A Fierke; Traci M Tanaka Hall
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

2.  RNase P branches out from RNP to protein: organelle-triggered diversification?

Authors:  Katherine C Goldfarb; Sumit Borah; Thomas R Cech
Journal:  Genes Dev       Date:  2012-05-15       Impact factor: 11.361

3.  RNase P enzymes: divergent scaffolds for a conserved biological reaction.

Authors:  Michael J Howard; Xin Liu; Wan Hsin Lim; Bradely P Klemm; Carol A Fierke; Markos Koutmos; David R Engelke
Journal:  RNA Biol       Date:  2013-04-01       Impact factor: 4.652

4.  Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme.

Authors:  Tien-Hao Chen; Akiko Tanimoto; Nikoloz Shkriabai; Mamuka Kvaratskhelia; Vicki Wysocki; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

5.  Biochemical Studies Provide Insights into the Necessity for Multiple Arabidopsis thaliana Protein-Only RNase P Isoenzymes.

Authors:  Tien-Hao Chen; Marcos Sotomayor; Venkat Gopalan
Journal:  J Mol Biol       Date:  2018-11-08       Impact factor: 5.469

6.  Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.

Authors:  Michael J Howard; Wan Hsin Lim; Carol A Fierke; Markos Koutmos
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-18       Impact factor: 11.205

7.  A real-time fluorescence polarization activity assay to screen for inhibitors of bacterial ribonuclease P.

Authors:  Xin Liu; Yu Chen; Carol A Fierke
Journal:  Nucleic Acids Res       Date:  2014-09-23       Impact factor: 16.971

8.  Fidelity of tRNA 5'-maturation: a possible basis for the functional dependence of archaeal and eukaryal RNase P on multiple protein cofactors.

Authors:  Wen-Yi Chen; Deepali Singh; Lien B Lai; Michael A Stiffler; Hue D Lai; Mark P Foster; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2012-01-31       Impact factor: 16.971

9.  RNase P RNA from the recently evolved plastid of Paulinella and from algae.

Authors:  Pilar Bernal-Bayard; Leonor Puerto-Galán; Agustín Vioque
Journal:  Int J Mol Sci       Date:  2014-11-13       Impact factor: 5.923

Review 10.  PPR proteins shed a new light on RNase P biology.

Authors:  Franziska Pinker; Géraldine Bonnard; Anthony Gobert; Bernard Gutmann; Kamel Hammani; Claude Sauter; Peter A Gegenheimer; Philippe Giegé
Journal:  RNA Biol       Date:  2013-06-19       Impact factor: 4.652

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