Literature DB >> 12466529

Elucidation of structure-function relationships in the protein subunit of bacterial RNase P using a genetic complementation approach.

Milan Jovanovic1, Ruth Sanchez, Sidney Altman, Venkat Gopalan.   

Abstract

RNase P is a ribonucleoprotein involved in tRNA biosynthesis in all living organisms. Bacterial RNase P is comprised of a catalytic RNA subunit and a lone protein cofactor which plays a supporting, albeit essential, role in the tRNA processing reaction in vivo. In this study, we have searched various databases to identify homologs of the protein subunit of RNase P from diverse bacteria and used an alignment of their primary sequences to determine the most highly conserved residues, and thereby extend earlier predictions of which residues might play an important role in RNA recognition. By employing a genetic complementation assay, we have also gained insights into structure- function relationships in the protein subunit of bacterial RNase P.

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Year:  2002        PMID: 12466529      PMCID: PMC137979          DOI: 10.1093/nar/gkf670

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  38 in total

1.  Fluorescence properties of a tryptophan residue in an aromatic core of the protein subunit of ribonuclease P from Escherichia coli.

Authors:  V Gopalan; R Golbik; G Schreiber; A R Fersht; S Altman
Journal:  J Mol Biol       Date:  1997-04-11       Impact factor: 5.469

2.  Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli.

Authors:  K A Peck-Miller; S Altman
Journal:  J Mol Biol       Date:  1991-09-05       Impact factor: 5.469

Review 3.  RNA-protein complexes.

Authors:  K Nagai
Journal:  Curr Opin Struct Biol       Date:  1996-02       Impact factor: 6.809

Review 4.  Conserved structures and diversity of functions of RNA-binding proteins.

Authors:  C G Burd; G Dreyfuss
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.

Authors:  J L Battiste; H Mao; N S Rao; R Tan; D R Muhandiram; L E Kay; A D Frankel; J R Williamson
Journal:  Science       Date:  1996-09-13       Impact factor: 47.728

7.  Product release is a rate-limiting step during cleavage by the catalytic RNA subunit of Escherichia coli RNase P.

Authors:  A Tallsjö; L A Kirsebom
Journal:  Nucleic Acids Res       Date:  1993-01-11       Impact factor: 16.971

8.  Kinetic and thermodynamic analysis of RNA-protein interactions in the RNase P holoenzyme from Escherichia coli.

Authors:  S J Talbot; S Altman
Journal:  Biochemistry       Date:  1994-02-15       Impact factor: 3.162

9.  Identification of phosphates involved in catalysis by the ribozyme RNase P RNA.

Authors:  M E Harris; N R Pace
Journal:  RNA       Date:  1995-04       Impact factor: 4.942

10.  Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding.

Authors:  W D Hardt; J M Warnecke; V A Erdmann; R K Hartmann
Journal:  EMBO J       Date:  1995-06-15       Impact factor: 11.598

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  13 in total

Review 1.  Of proteins and RNA: the RNase P/MRP family.

Authors:  Olga Esakova; Andrey S Krasilnikov
Journal:  RNA       Date:  2010-07-13       Impact factor: 4.942

2.  Evidence that binding of C5 protein to P RNA enhances ribozyme catalysis by influencing active site metal ion affinity.

Authors:  Lei Sun; Michael E Harris
Journal:  RNA       Date:  2007-07-25       Impact factor: 4.942

3.  Essential is not irreplaceable: fitness dynamics of experimental E. coli RNase P RNA heterologous replacement.

Authors:  Jasmine L Loveland; Jocelyn Rice; Paula C G Turrini; Michelle Lizotte-Waniewski; Robert L Dorit
Journal:  J Mol Evol       Date:  2014-09-30       Impact factor: 2.395

4.  M1 RNA is important for the in-cell solubility of its cognate C5 protein: Implications for RNA-mediated protein folding.

Authors:  Ahyun Son; Seong Il Choi; Gyoonhee Han; Baik L Seong
Journal:  RNA Biol       Date:  2015-10-30       Impact factor: 4.652

5.  A functional RNase P protein subunit of bacterial origin in some eukaryotes.

Authors:  Lien B Lai; Pilar Bernal-Bayard; Gireesha Mohannath; Stella M Lai; Venkat Gopalan; Agustín Vioque
Journal:  Mol Genet Genomics       Date:  2011-10-11       Impact factor: 3.291

6.  The RNR motif of B. subtilis RNase P protein interacts with both PRNA and pre-tRNA to stabilize an active conformer.

Authors:  Kristin S Koutmou; Jeremy J Day-Storms; Carol A Fierke
Journal:  RNA       Date:  2011-05-27       Impact factor: 4.942

7.  Analysis of RNase P protein (rnpA) expression in Bacillus subtilis utilizing strains with suppressible rnpA expression.

Authors:  Markus Gössringer; Rosel Kretschmer-Kazemi Far; Roland K Hartmann
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

8.  Probing the architecture of the B. subtilis RNase P holoenzyme active site by cross-linking and affinity cleavage.

Authors:  Somashekarappa Niranjanakumari; Jeremy J Day-Storms; Mahiuddin Ahmed; John Hsieh; Nathan H Zahler; Ronald A Venters; Carol A Fierke
Journal:  RNA       Date:  2007-02-13       Impact factor: 4.942

9.  The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.

Authors:  Masao Inoue; Kenji Fukui; Yuki Fujii; Noriko Nakagawa; Takato Yano; Seiki Kuramitsu; Ryoji Masui
Journal:  J Biol Chem       Date:  2017-04-21       Impact factor: 5.157

10.  The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity.

Authors:  Martin H Linden; Roland K Hartmann; Dagmar Klostermeier
Journal:  Nucleic Acids Res       Date:  2008-09-09       Impact factor: 16.971

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