Literature DB >> 21983085

Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation.

Jutta Vogelmann1, Alessandro Valeri, Emmanuelle Guillou, Olivier Cuvier, Marcello Nollmann.   

Abstract

Eukaryotic chromosomes are condensed into several hierarchical levels of complexity: DNA is wrapped around core histones to form nucleosomes, nucleosomes form a higher-order structure called chromatin, and chromatin is subsequently compartmentalized in part by the combination of multiple specific or unspecific long-range contacts. The conformation of chromatin at these three levels greatly influences DNA metabolism and transcription. One class of chromatin regulatory proteins called insulator factors may organize chromatin both locally, by setting up barriers between heterochromatin and euchromatin, and globally by establishing platforms for long-range interactions. Here, we review recent data revealing a global role of insulator proteins in the regulation of transcription through the formation of clusters of long-range interactions that impact different levels of chromatin organization.

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Year:  2011        PMID: 21983085      PMCID: PMC3796873          DOI: 10.4161/nucl.2.5.17860

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  137 in total

1.  Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase.

Authors:  B van Steensel; S Henikoff
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

Review 2.  Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture.

Authors:  T Cremer; G Kreth; H Koester; R H Fink; R Heintzmann; M Cremer; I Solovei; D Zink; C Cremer
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2000       Impact factor: 1.807

3.  A chromatin insulator determines the nuclear localization of DNA.

Authors:  T I Gerasimova; K Byrd; V G Corces
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

4.  Protein:protein interactions and the pairing of boundary elements in vivo.

Authors:  Jason Blanton; Miklos Gaszner; Paul Schedl
Journal:  Genes Dev       Date:  2003-03-01       Impact factor: 11.361

5.  Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function.

Authors:  D Ghosh; T I Gerasimova; V G Corces
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

6.  NELF and DSIF cause promoter proximal pausing on the hsp70 promoter in Drosophila.

Authors:  Chwen-Huey Wu; Yuki Yamaguchi; Lawrence R Benjamin; Maria Horvat-Gordon; Jodi Washinsky; Espen Enerly; Jan Larsson; Andrew Lambertsson; Hiroshi Handa; David Gilmour
Journal:  Genes Dev       Date:  2003-06-01       Impact factor: 11.361

7.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

8.  Structural and dynamic functions establish chromatin domains.

Authors:  Kojiro Ishii; Ulrich K Laemmli
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

9.  Identification of a multicopy chromatin boundary element at the borders of silenced chromosomal domains.

Authors:  Olivier Cuvier; Craig M Hart; Emmanuel Käs; Ulrich K Laemmli
Journal:  Chromosoma       Date:  2002-02       Impact factor: 4.316

10.  Gene expression during the life cycle of Drosophila melanogaster.

Authors:  Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Journal:  Science       Date:  2002-09-27       Impact factor: 47.728

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  23 in total

1.  Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex.

Authors:  Daniel Wolle; Fabienne Cleard; Tsutomu Aoki; Girish Deshpande; Paul Schedl; Francois Karch
Journal:  Mol Cell Biol       Date:  2015-08-24       Impact factor: 4.272

2.  Identification of Gene Positioning Factors Using High-Throughput Imaging Mapping.

Authors:  Sigal Shachar; Ty C Voss; Gianluca Pegoraro; Nicholas Sciascia; Tom Misteli
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

3.  Structural maintenance of chromosome complexes and bone development: the beginning of a wonderful relationship?

Authors:  Miri Cohen-Zinder; Miri Zinder-Cohen; David Karasik; Itay Onn
Journal:  Bonekey Rep       Date:  2013-08-07

4.  Interleukin 33 as a mechanically responsive cytokine secreted by living cells.

Authors:  Rahul Kakkar; Hillary Hei; Stephan Dobner; Richard T Lee
Journal:  J Biol Chem       Date:  2012-01-03       Impact factor: 5.157

Review 5.  Boundaries of loop domains (insulators): Determinants of chromosome form and function in multicellular eukaryotes.

Authors:  Darya Chetverina; Miki Fujioka; Maksim Erokhin; Pavel Georgiev; James B Jaynes; Paul Schedl
Journal:  Bioessays       Date:  2017-01-30       Impact factor: 4.345

6.  Tbf1 and Vid22 promote resection and non-homologous end joining of DNA double-strand break ends.

Authors:  Diego Bonetti; Savani Anbalagan; Giovanna Lucchini; Michela Clerici; Maria Pia Longhese
Journal:  EMBO J       Date:  2012-12-07       Impact factor: 11.598

7.  Osmotic challenge drives rapid and reversible chromatin condensation in chondrocytes.

Authors:  Jerome Irianto; Joe Swift; Rui P Martins; Graham D McPhail; Martin M Knight; Dennis E Discher; David A Lee
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

8.  Insulators recruit histone methyltransferase dMes4 to regulate chromatin of flanking genes.

Authors:  Priscillia Lhoumaud; Magali Hennion; Adrien Gamot; Suresh Cuddapah; Sophie Queille; Jun Liang; Gael Micas; Pauline Morillon; Serge Urbach; Olivier Bouchez; Dany Severac; Eldon Emberly; Keji Zhao; Olivier Cuvier
Journal:  EMBO J       Date:  2014-06-10       Impact factor: 11.598

9.  High-resolution in situ hybridization analysis on the chromosomal interval 61C7-61C8 of Drosophila melanogaster reveals interbands as open chromatin domains.

Authors:  Thomas Zielke; Alexander Glotov; Harald Saumweber
Journal:  Chromosoma       Date:  2015-10-31       Impact factor: 4.316

Review 10.  Making connections: insulators organize eukaryotic chromosomes into independent cis-regulatory networks.

Authors:  Darya Chetverina; Tsutomu Aoki; Maksim Erokhin; Pavel Georgiev; Paul Schedl
Journal:  Bioessays       Date:  2013-11-26       Impact factor: 4.345

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