Literature DB >> 23200044

Nonselective conduction in a mutated NaK channel with three cation-binding sites.

Simone Furini1, Carmen Domene.   

Abstract

The NaK channel is a cation-selective protein with similar permeability for K(+) and Na(+) ions. Crystallographic structures are available for the wild-type and mutated NaK channels with different numbers of cation-binding sites. We have performed a comparison between the potentials of mean force governing the translocation of K(+) ions and mixtures of one Na(+) and three K(+) ions in a mutated NaK channel with only three cation-binding sites (NaK-CNG). Since NaK-CNG is not selective for K(+) over Na(+), analysis of its multi-ion potential energy surfaces can provide clues about how selectivity originates. Comparison of the potentials of mean force of NaK-CNG and K(+)-selective channels yields observations that strongly suggest that the number of contiguous ion binding sites in a single-file mechanism is the key determinant of the channel's selectivity properties, as already proposed by experimental studies. We conclude that the presence of four binding sites in K(+)-selective channels is essential for highly selective and efficient permeation of K(+) ions, and that a key difference between K(+)-selective and nonselective channels is the absence/presence of a binding site for Na(+) ions at the boundary between S2 and S3 in the context of multi-ion permeation events.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23200044      PMCID: PMC3512044          DOI: 10.1016/j.bpj.2012.10.004

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Ion permeation mechanism of the potassium channel.

Authors:  J Aqvist; V Luzhkov
Journal:  Nature       Date:  2000-04-20       Impact factor: 49.962

2.  K(+)/Na(+) selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations.

Authors:  V B Luzhkov; J Aqvist
Journal:  Biochim Biophys Acta       Date:  2001-08-13

3.  Simulations of ion current in realistic models of ion channels: the KcsA potassium channel.

Authors:  A Burykin; C N Schutz; J Villá; A Warshel
Journal:  Proteins       Date:  2002-05-15

4.  On the selective ion binding hypothesis for potassium channels.

Authors:  Ilsoo Kim; Toby W Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

5.  Molecular dynamics simulations of the TrkH membrane protein.

Authors:  Carmen Domene; Simone Furini
Journal:  Biochemistry       Date:  2012-02-14       Impact factor: 3.162

6.  Conduction properties of KcsA measured using brownian dynamics with flexible carbonyl groups in the selectivity filter.

Authors:  Shin-Ho Chung; Ben Corry
Journal:  Biophys J       Date:  2007-04-13       Impact factor: 4.033

7.  The predominant role of coordination number in potassium channel selectivity.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

8.  Dynamics, energetics, and selectivity of the low-K+ KcsA channel structure.

Authors:  Carmen Domene; Simone Furini
Journal:  J Mol Biol       Date:  2009-04-23       Impact factor: 5.469

9.  Selectivity and permeation of alkali metal ions in K+-channels.

Authors:  Simone Furini; Carmen Domene
Journal:  J Mol Biol       Date:  2011-04-22       Impact factor: 5.469

Review 10.  Examining ion channel properties using free-energy methods.

Authors:  Carmen Domene; Simone Furini
Journal:  Methods Enzymol       Date:  2009-11-13       Impact factor: 1.600

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  4 in total

Review 1.  K(+) and Na(+) conduction in selective and nonselective ion channels via molecular dynamics simulations.

Authors:  Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

2.  Selectivity filter modalities and rapid inactivation of the hERG1 channel.

Authors:  Williams E Miranda; Kevin R DeMarco; Jiqing Guo; Henry J Duff; Igor Vorobyov; Colleen E Clancy; Sergei Yu Noskov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-24       Impact factor: 11.205

3.  A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channels.

Authors:  Luisa Maria Rosaria Napolitano; Ina Bisha; Matteo De March; Arin Marchesi; Manuel Arcangeletti; Nicola Demitri; Monica Mazzolini; Alex Rodriguez; Alessandra Magistrato; Silvia Onesti; Alessandro Laio; Vincent Torre
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

4.  Energetics of Ion Permeation in an Open-Activated TRPV1 Channel.

Authors:  Christian Jorgensen; Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

  4 in total

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