Literature DB >> 21953028

Unusual augmentation of germline genome size in Cyclops kolensis (Crustacea, Copepoda): further evidence in support of a revised model of chromatin diminution.

Grace A Wyngaard1, Ellen M Rasch, Barbara A Connelly.   

Abstract

Embryonic chromatin diminution, the selective excision of large amounts of heterochromatic DNA from presomatic cell lineages, provides an example of an unusually large augmentation of the germline genome and raises questions regarding the source of the increased amount of DNA and its relevance to the biology of the organism. DNA levels in adult germ cell nuclei of the copepod Cyclops kolensis were determined by DNA-Feulgen cytophotometry and compared with those of somatic nuclei of adults and both pre- and postdiminuted embryos from the same mothers. Almost 75 pg DNA/nucleus is excised by diminution, resulting in the return of each generation to the approximately 1 pg DNA/nucleus level found for adult soma. To account for the increase in DNA levels of germ cells observed here, we propose alternative hypotheses to the original model of chromatin diminution: (1) repetitive endocycles or (2) proliferation of genetic elements. Specific tests for these hypotheses using next-generation sequencing and quantitative cytophotometry, as well as the functional significance of germ cell DNA augmentation to the copepod, are discussed.

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Year:  2011        PMID: 21953028     DOI: 10.1007/s10577-011-9234-3

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  28 in total

Review 1.  Chromatin elimination--an oddity or a common mechanism in differentiation and development?

Authors:  M Kloc; B Zagrodzinska
Journal:  Differentiation       Date:  2001-09       Impact factor: 3.880

2.  Evidence for endoreduplication: germ cell DNA levels prior to chromatin diminution in Mesocyclops edax.

Authors:  E M Rasch; G A Wyngaard
Journal:  J Histochem Cytochem       Date:  2001-06       Impact factor: 2.479

Review 3.  [Chromatin diminution is a key process explaining the eukaryotic genome size paradox and some mechanisms of genetic isolation].

Authors:  A P Akif'ev; A K Grishanin; S V Degtiarev
Journal:  Genetika       Date:  2002-05

Review 4.  Evolutionary dynamics of transposable elements in a small RNA world.

Authors:  Justin P Blumenstiel
Journal:  Trends Genet       Date:  2010-11-11       Impact factor: 11.639

Review 5.  Epigenetics: a landscape takes shape.

Authors:  Aaron D Goldberg; C David Allis; Emily Bernstein
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

6.  New cell or new cycle?

Authors:  Olivier Ganier; Marcel Mechali
Journal:  Genes Dev       Date:  2008-11-01       Impact factor: 11.361

Review 7.  Transposable elements and the evolution of regulatory networks.

Authors:  Cédric Feschotte
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

8.  Programmed loss of millions of base pairs from a vertebrate genome.

Authors:  Jeramiah J Smith; Francesca Antonacci; Evan E Eichler; Chris T Amemiya
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-26       Impact factor: 11.205

Review 9.  The differentiation of germ and somatic cell lines in nematodes.

Authors:  H Tobler
Journal:  Results Probl Cell Differ       Date:  1986

10.  Chromatin diminution in the copepod Mesocyclops edax: diminution of tandemly repeated DNA families from somatic cells.

Authors:  Guy Drouin
Journal:  Genome       Date:  2006-06       Impact factor: 2.166

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  5 in total

1.  EMBRYONIC DEVELOPMENT AND A QUANTITATIVE MODEL OF PROGRAMMED DNA ELIMINATION IN MESOCYCLOPS EDAX (S. A. FORBES, 1891) (COPEPODA: CYCLOPOIDA).

Authors:  Michelle K Clower; Ashton S Holub; Rebecca T Smith; Grace A Wyngaard
Journal:  J Crustacean Biol       Date:  2016       Impact factor: 1.430

Review 2.  An epigenetic toolkit allows for diverse genome architectures in eukaryotes.

Authors:  Xyrus X Maurer-Alcalá; Laura A Katz
Journal:  Curr Opin Genet Dev       Date:  2015-11-30       Impact factor: 5.578

3.  Observing copepods through a genomic lens.

Authors:  James E Bron; Dagmar Frisch; Erica Goetze; Stewart C Johnson; Carol Eunmi Lee; Grace A Wyngaard
Journal:  Front Zool       Date:  2011-09-20       Impact factor: 3.172

4.  Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development.

Authors:  Cheng Sun; Grace Wyngaard; D Brian Walton; Holly A Wichman; Rachel Lockridge Mueller
Journal:  BMC Genomics       Date:  2014-03-11       Impact factor: 3.969

5.  Chromatin diminution in Copepoda (Crustacea): pattern, biological role and evolutionary aspects.

Authors:  Andrey Grishanin
Journal:  Comp Cytogenet       Date:  2014-01-09       Impact factor: 1.800

  5 in total

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